Cucumis sativus (cucumber): 101222280
Help
Entry
101222280 CDS
T02486
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
101222280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csv03036
]
101222280
03400 DNA repair and recombination proteins [BR:
csv03400
]
101222280
Chromosome and associated proteins [BR:
csv03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101222280
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
101222280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
101222280
NCBI-ProteinID:
XP_004151991
LinkDB
All DBs
Position
3:19247085..19253688
Genome browser
AA seq
1221 aa
AA seq
DB search
MEEVEDRIFLNSLGVTSANPEDIERDLLNEAKKKSENGVEVGGIEEENVCDKLDTTDSPS
ASHVQLYQKLRAVEYEIDAVASTVEPGEKLERNEQHSCVSTDSQKHAREEDSVSASGDGL
QHALAVDRLRSLKKTQHQLKNELFHLNDKHAKTILEIVKDRSKPKRKSKEVKKSGNDGGK
RLKVVSFDEDNDFDAALDAATVGFVETERDELVRKGILTPFHKLKGFERRLQSPGQSSLQ
NPRGSRDEVKEEEEENDDFASDSVARALRSMSVAAQARPTTKLLDPDALPKLDPPTRPFY
RLKTPAKVPLSAEDKPTTKTKSKQTRRPLPDKKYRRQIAMEERDKEATENMSDGLATSSS
EREDSGDLEDDVNELSFVTLEGGLKIPQSIFDELFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLSFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPRLLAEILHDSAHDP
TYKNMREKSDGSDESEDSEGSDYRKNSQPKGTKRWDALINRVLRSESGLLITTYEQLRLL
GDKLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLKELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AHLPKKTEHVLFCSLTSEQRSVYRAFLASSEVKSILDGNRNSLSGIDVMRKICNHPDLLE
REHAFQNPDYGNPERSGKMKVVEQVLKVWKEQGHRVLLFAQTQQMLDILERFLVGGGYTY
RRMDGGTPVKQRMALIDEFNNSCEVFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDM
QARERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMK
DLFTLNEDGMDGSTETSNIFSALTDSVNVVGVQKNEKDGQKSSSGSVLFADSADENLCKS
EIETSGRSSSIEGQGGGADEDTNILKSLFDAHGIHSAVNHDIIINADDGEKIRLEEQASQ
VARRAAEALRQSRMLRSNESVSVPTWTGKAGTAGAPSSVRRKFGSTVNTLVVTNNSKSSN
EVSKNGTIHLNGHAAGTSCGKALSSADLLAKIRGNQERAISAGLEHQSTSSTNNVRTVGV
GSSRSSSKNLSVVQPEVLIRQICTFIHQRGGAAASASIVEHFKDRIPSNDLPLFKNLLKE
IAILEKSSSGSFWVLKAEYKQ
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtggaggatcggatttttctcaacagtttgggtgtaacgtcagctaatccc
gaggatatagagcgggacttgttgaatgaggcgaaaaagaagagtgagaacggtgttgaa
gttggagggattgaagaagagaatgtttgtgataagttagatactactgattcaccttct
gccagtcatgtgcagctctaccagaagcttagggctgtagaatatgagatagatgctgtt
gcatcaacagtggaaccaggggagaaacttgaaaggaatgaacaacattcttgcgtcagc
acggactcccagaaacatgcgcgtgaagaggatagtgtctcagcttctggagatggcctt
cagcatgccctagcagttgacaggctaagaagcctgaagaaaacccaacatcagttgaag
aatgaactttttcatttgaacgacaagcatgccaagacaatattggagatagtcaaggac
agatcaaaacctaagagaaaatctaaagaggttaagaaatcaggtaacgatggagggaag
aggttgaaagttgtgtcatttgatgaagataatgattttgacgcagctttggatgcagcc
actgtgggctttgttgaaacagaaagagatgaattggtgcggaagggaattttaacacca
tttcacaagctaaagggctttgaacgccgtcttcagagtccagggcaatctagtcttcag
aaccctagaggatcaagggatgaagtaaaggaggaagaagaggaaaatgatgattttgct
tctgacagtgttgctagagccctccggtcaatgtcagtggctgcacaagctcgaccaacc
actaaacttcttgatccagatgctttgccaaagcttgatccaccaacccgtcctttctac
aggttaaaaacacctgcaaaggttcccctatctgcagaagacaaacctacaacgaaaaca
aaatccaagcagactagacggcctttgccagacaaaaaatatagaagacaaattgctatg
gaggaaagagacaaggaagctactgagaatatgtcagatggtttggctacatcaagttct
gaaagagaagattcgggagatttagaagatgatgttaacgaactttcttttgtaacactt
gaaggcgggctgaaaattcctcagagtatatttgatgaactatttgattaccaaaaagtt
ggggtgcagtggttatgggaattgcactgccaaagagcaggtggaattattggagatgag
atgggccttggaaagacagtccaggtcttgtcctttttaggtgcattgcatttcagtaac
atttataaaccaagcatcattgtctgccctgttacactagttagacagtggaagagggag
gcacggaaatggtgcccaagacttttggcagaaatcttacatgattctgctcatgatccc
acttacaagaatatgcgagaaaaatctgatggaagtgatgaaagtgaagattcagaggga
agtgactataggaaaaactcacagcctaaaggcactaaaagatgggatgccttgataaac
cgtgttttgaggtcagaatcgggtttgctgattaccacttacgaacaactacgactgtta
ggtgataaattgcttgacattgagtggggttatgcaatcctggatgaagggcatcgcatt
cgaaacccaaatgctgaagtcactttagtttgcaagcagctacagacagttcaccgcata
ataatgactggctctccaattcagaataaattgaaagagttgtggtccttgtttgatttt
gttttccctgggaagctgggggtgttgcctgtatttgaagcagagtttgcagttcctata
tctgtgggtggctatgctaatgcctctccgttgcaagtatcaactgcatataggtgtgct
gttgttctccgtgacttaattatgccctatcttcttagaaggatgaaagccgatgtaaat
gctcatttgccaaagaagactgaacacgtcctcttctgtagccttacttctgaacaacgt
tctgtctatagagcattccttgcaagctctgaagtgaagagtattttggatggaaataga
aattctctttctggaattgatgtaatgcgtaaaatttgcaatcacccagatctcctcgag
agagaacacgctttccagaatcctgactatgggaatcctgaacgtagtggaaaaatgaag
gtggttgagcaagtgctgaaggtctggaaggagcaaggtcaccgtgttcttcttttcgct
cagacgcagcagatgcttgatattttagagagatttctggttggaggtggttatacttat
aggaggatggatggtggaactcccgtcaaacagagaatggccttgattgatgaattcaat
aactcctgtgaggtgtttgtttttattttaacaaccaaggttggcggtctgggaaccaac
ctaactggagcagatagagtgataatctttgaccctgattggaatccgtcgactgacatg
caggctagggagcgtgcttggcgtattggtcaacagcgggatgtaacagtgtatagattg
ataactcgtggaactatagaggagaaagtgtaccatcgacagatatataagcattttctc
actaataagatattaaagaacccacagcagaaaaggttctttaaggctagagacatgaag
gatctctttacactgaacgaggatgggatggatggatcaacagagacatcaaatattttc
agtgcgttgactgatagtgtaaatgttgttggtgttcagaaaaatgagaaggatgggcaa
aaatctagcagtggctcagttctgtttgcagattctgctgatgaaaacctatgcaaatca
gagattgaaacttctggaaggagtagttccatcgagggccagggtggtggagcagacgag
gacacaaatatcttgaagagcctttttgatgcacatggtattcatagcgctgttaatcat
gatatcattattaatgctgatgatggggagaagatacggctagaggagcaagcttctcaa
gttgcacgtagagcagccgaggcattgcgccagtctagaatgctgcggagtaacgagagc
gtctcagttccaacatggactggaaaagctggaactgctggtgcaccatcgtctgttcgt
cggaagtttggttcaaccgttaacactctggtggtaaccaacaattccaaatcctcgaat
gaagtatctaaaaatggaactatccatttaaatggtcatgcagctggcacatcttgtgga
aaggccttatcctcagcagatctgctggctaaaattcgaggaaaccaagaaagagcaatc
agcgctgggcttgaacatcaatcaactagttcaacaaataatgtaagaactgttggtgtt
ggttcttctcggtcgtcgtcgaagaacttatctgtagtacaacctgaagtattgattcgt
cagatatgcacatttattcatcaaagaggtggagcagctgcttcagccagtattgtagag
cattttaaggacaggataccatcaaacgacttgcccttgtttaagaatctattgaaagag
atagcgatattggagaaaagctccagtggttcattctgggttcttaaggcagagtataaa
cagtaa
DBGET
integrated database retrieval system
