Clostridium tetani E88: CTC_02609
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Entry
CTC_02609 CDS
T00112
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ctc
Clostridium tetani E88
Pathway
ctc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTC_02609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctc03021
]
CTC_02609
03400 DNA repair and recombination proteins [BR:
ctc03400
]
CTC_02609
Enzymes [BR:
ctc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTC_02609
Transcription machinery [BR:
ctc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTC_02609
DNA repair and recombination proteins [BR:
ctc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTC_02609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AAO37062
UniProt:
Q890N4
LinkDB
All DBs
Position
complement(2756794..2760504)
Genome browser
AA seq
1236 aa
AA seq
DB search
MVHPVQVGKRTRMSFSKIKEVCEMSNLIEVQLDSYEWFLQEGLQEVFDDINPIQDYTGNL
SLEFVGYKLDMENIKYSVEECKERDATYAAPLKVSVRLINKETGEIKEQDVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDVSLDKSGKELFSATVIPNRGAWLEYETDSNDII
YVRIDKTRKLPISILIRALEYGSDLEIIDYFGEDERLKASIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAMSLIGSLFFDAKRYDLSRVGRYKFNKKLALHLRIANQISAQDIVNPATG
EIVVQEGEKIDRDKAIEIQNSGINSVDIQLDDKVLRVIGNNFVDIKSFVKFDIDDLNIKE
YVHYPTLKEILDNYSDEEMIKEQIKKNINVLIPKHIIRDDIMSTISYEIGLPYGIGYTDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQDSITPQALINIRPVTASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYAKVNEYGFIETPYRKVDKATGVVTHDIIYMTADEEDHYLIAKANEI
LNDDGTFIDDKITVRDQEDVLVVPKEEVDFMDVSPRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPEAPIVGTGIEYKAAVDSAVLPKAKKPGVVTYVSASEIRVKKDKPDSN
GDVDKYKLLKFKRSNQGTCINQKPLVSKGDKVDTKTVLADGPSTDLGEIALGKNIRMGFI
TWEGYNYEDAMLISEELVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDI
DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEA
GIIVDVKVFTRENGDELSPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDM
PFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHVATPVFDGATEPEIVECL
EKAGYEGDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGV
PESFKVLIKELQALCLDVKVLNDDNEEIAIKELADDDMVELEVNIEGSEDYTEPKQPNDN
YLEEEENKDKESDYDEDLNFDDLTKGLQLDDFNDEH
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagtaggaaaaagaactagaatgagtttctcaaaaatcaaagaa
gtatgtgaaatgtctaatttaattgaagtacagctagactcatatgaatggtttttgcag
gaaggacttcaagaggtatttgatgacatcaaccctattcaagattacactggaaatctt
agtcttgaatttgtagggtataaactggatatggaaaatataaaatattcagttgaagaa
tgtaaagagagagatgctacttatgcagctccattaaaagtaagtgtaagacttataaat
aaagaaacaggggaaattaaagaacaagatgtctttatgggtgacttcccacttatgact
gagcaaggaacatttataattaatggtgcagaaagagtaatagtcagtcaattagtcaga
tctccaggagtttattatgatgtatctctagataaatcaggaaaagaattattctcagct
acagttataccaaatagaggtgcatggttagagtatgaaactgattcaaatgatataatt
tatgtaagaatagataaaactagaaaattacctatttctatattaattagagcattagaa
tatggttcagacttagaaattatcgattatttcggagaagatgaaagattaaaagcttcg
atagaaaaagataacacaaagacaaaagaagaggccttgttagaaatatataaaagatta
agaccaggagagcctccaacagtagatagtgctatgtctcttataggatccttatttttc
gatgctaaaagatatgacttatcaagagttggaagatataagtttaataaaaaattagcg
ttacatttaagaattgcaaatcagatttcagcccaagatatagtaaatccagccacagga
gaaatagtagttcaagaaggagaaaaaatagacagagataaagcaatagaaatacaaaat
tctggaataaattctgttgatatacaattggatgacaaggtattaagagtaataggaaat
aattttgttgacataaaaagttttgttaaattcgatatagatgatttaaatataaaagaa
tatgtacactatcctacattaaaagagatacttgacaattatagtgacgaagaaatgata
aaggaacaaataaagaaaaatataaatgtattaattcctaagcatataataagggatgat
attatgtctactataagctatgaaataggattgccttatggtataggttatacagatgac
atagatcacttaggaaacagaagattaagatctgtaggagaattactacaaaatcagttt
agaataggtctttcaaggatggaaagagtagttaaggaaagaatgactattcaagatcag
gattctataacaccacaagcattaataaacataagacctgtaacagcatctataaaggaa
ttttttggaagttctcaactttcacaatttatggatcaaactaacccactatcagaatta
actcataagagaagattatctgctttgggacctggaggattatctagggaaagagcaggc
tttgaagtaagagacgttcaccactcacactatggtagaatgtgtcctatagaaacacca
gaaggtcctaatatagggcttattaactcacttgctacatatgcaaaggttaatgagtat
ggttttatagaaacaccttatagaaaagttgataaagccacaggagtagttacacatgat
ataatctatatgactgcagatgaagaggatcattatttaatagctaaagcaaatgagata
ctaaatgatgatggtactttcatagatgataaaattacagtaagagatcaggaagacgta
ttagttgtacctaaagaagaagttgactttatggatgtatctcctagacaattagtttct
gttgcaactgcaatgataccattcctagaaaatgacgatgctagtagagcgcttatggga
tctaacatgcaacgtcaagctgttccactattaaaaccagaagctccaattgttggtact
ggaatagaatacaaagcagccgtagattctgctgttttaccaaaagcaaaaaaaccagga
gtagttacatacgtaagtgctagcgagataagagttaaaaaagataaaccagacagcaat
ggagatgtagataaatataaactgttaaagtttaaaagatctaaccaaggaacatgtata
aatcaaaaaccattagtttctaaaggggataaagttgacacaaagactgtgttagctgat
ggaccttcaacagacttaggtgaaatagcattaggtaaaaatataagaatgggctttata
acttgggaaggttataactatgaagatgctatgttaatatcagaagaactagtaagagaa
gatgtatttacatctattcatattgaagaatatgaagctgaagctagagacactaaacta
ggccctgaagaaattaccagagacataccaaatgtaggagaagatgctctaaaagacata
gacgaaagaggaataattagaataggtgcagaggttcgttctggagacattttagtagga
aaagttactcctaagggagaaacagaattgacagcagaagagagactacttagagctata
tttggagaaaaagcaagagaagtaagagatacttccttaagagttccccatggagaagct
ggaataattgtagatgttaaggtatttacaagggaaaatggagatgaactatcacctggt
gtaaataaactagtaagatgttatatagctcaaaagagaaaaatatcagtaggggataaa
atggcaggaagacacggaaataaaggtgttatatcaagagtactgccagaagaagatatg
ccatttttaccagatggaagacctctacaaatatgtttaaatcctcttggagttccatca
cgtatgaatattggtcaggtactggaagtacatttaggattagcagcatcgaaattaggt
tggcatgttgcaaccccagtatttgatggtgcaactgaaccggaaatagttgaatgtttg
gagaaagctggctatgaaggggacggaaaaactgtattatatgacggaagaacaggagaa
ccttttgacaatagagtaacagttggatatatgtatatattaaaacttgctcacttagta
gatgacaaaatacatgcaagatccactggaccatattcattagttacacagcaaccatta
ggtggtaaagctcaatttggaggacaaagatttggtgaaatggaagtttgggcattagaa
gcttatggagctgcacatacacttcaagaaatacttacagtaaaatcagacgatgtagtt
ggtagagttaaaacttatgaagcaatagtaaaaggtgagaatataccagaaccaggagtt
ccagaatcatttaaagttttaattaaagaactacaagctttatgtcttgatgtaaaagtt
cttaatgatgataacgaagagattgctataaaagaattagcagatgacgatatggtagaa
ttagaagtaaatatagaaggatcagaagattatactgaacctaaacagccaaatgacaac
tatctagaagaagaggaaaataaagataaagaatctgattatgatgaggatttaaatttt
gatgacttaactaagggattacagctagatgatttcaacgatgaacattaa
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integrated database retrieval system
