Clostridium tetani 12124569: BN906_02865
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Entry
BN906_02865 CDS
T02905
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ctet
Clostridium tetani 12124569
Pathway
ctet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN906_02865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctet03021
]
BN906_02865 (rpoB)
03400 DNA repair and recombination proteins [BR:
ctet03400
]
BN906_02865 (rpoB)
Enzymes [BR:
ctet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN906_02865 (rpoB)
Transcription machinery [BR:
ctet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN906_02865 (rpoB)
DNA repair and recombination proteins [BR:
ctet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN906_02865 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CDI50825
LinkDB
All DBs
Position
complement(2766620..2770339)
Genome browser
AA seq
1239 aa
AA seq
DB search
MVHPVQVGKRTRMSFSKIKEVCEMSNLIEVQLDSYEWFLQEGLQEVFDDINPIQDYTGNL
SLEFVGYKLDMENIKYSVEECKERDATYAAPLKVSVRLINKETGEIKEQDVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYNVSLDKSGKELFSATVIPNRGAWLEYETDSNDII
YVRIDKTRKLPISILIRALEYGSDLEIIDYFGEDERLKASIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAMSLIGSLFFDAKRYDLSRVGRYKFNKKLALHLRIANQISAQDIVNPATG
EIVVQEGEKIDRDKAIEIQNSGINSVDIQLDDKVLRVIGNNFVDIKSFVKFDIDDLNIKE
YVHYPTLKEILDNYSDEEMIKEQIKKNINVLIPKHIIRDDIMSTISYEIGLPYGIGYTDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQDSITPQALINIRPVTASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYAKVNEYGFIETPYRKVDKGTGVVTHDIIYMTADEEDHYLIAKANEI
LNDDGTFIDDKITVRDQEDVLVVPKEEVDFMDVSPRQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPEAPIVGTGIEYKAAVDSAVLPKAKKPGVVTYVSASEIRVKKDKPDSN
GDVDKYKLLKFKRSNQGTCINQKPLVSKGDKVDTKTVLADGPSTDLGEIALGKNIRMGFI
TWEGYNYEDAMLISEELVREDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDI
DERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEA
GIIVDVKVFTRENGDELSPGVNKLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDM
PFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGWHVATPVFDGATESEIVECL
EKAGYKGDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGV
PESFKVLIKELQALCLDVKVLNDDNEEIAIKELADDDMVELEVNIEGSEDYTEPKQPNDN
YLEEEEDKDKDKDKEPNYDDLNFDDLTKGLQLDDFNDEH
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagtaggaaaaagaactagaatgagtttctcaaaaatcaaagaa
gtatgtgaaatgtctaatttaattgaagtacagctagactcatatgaatggtttttgcag
gaaggacttcaagaggtatttgatgacatcaaccctattcaagattacactggaaatctt
agtcttgaatttgtagggtataaactggatatggaaaatataaaatattcagttgaagaa
tgtaaagagagagatgctacttatgcagctccattaaaagtaagtgtaagacttataaat
aaagaaacaggggaaattaaagaacaagatgtctttatgggtgacttcccacttatgact
gagcaaggaacatttataattaatggtgcagaaagagtaatagtcagtcaattagtcaga
tctccaggagtttattataatgtatctctagataaatcaggaaaagaattattctcagct
acagttataccaaatagaggtgcatggttagagtatgaaactgattcaaatgatataatt
tatgtaagaatagataaaactagaaaattacctatttctatattaattagagcattagaa
tatggttcagacttagaaattatcgattatttcggagaagatgaaagattaaaagcttcg
atagaaaaagataatacaaagacaaaagaagaggccctgttagaaatatataaaagatta
agaccaggagaacctccaacagtagatagtgctatgtctcttataggatccttatttttc
gatgccaaaagatatgacttatcaagagttggaagatataagtttaataaaaaattagcg
ttacatttaagaattgcaaatcagatttcagcccaagatatagtaaatccagccacagga
gaaatagtagttcaagaaggagaaaaaatagacagagataaagcaatagaaatacaaaac
tctggaataaattctgttgatatacaattggatgacaaggtattaagagtaataggaaat
aattttgttgacataaaaagttttgttaaattcgatatagatgatttaaatataaaagag
tatgtacattatcctacattaaaagagatacttgacaattatagcgacgaagaaatgata
aaggaacaaataaagaaaaatataaatgtattaattcctaagcatataataagagatgat
attatgtctactataagctatgaaataggattgccttatggtataggttatacagatgac
atagatcacttaggaaacagaagattaagatctgtaggagaattactacaaaatcagttt
agaataggtctttcaaggatggaaagagtagttaaggaaagaatgactattcaagatcag
gattctataacaccacaagcattaataaacataagacctgtaacagcatctataaaggaa
ttttttggaagctctcagctttcacaatttatggatcaaactaacccgctatcagaatta
actcataagagaagattatctgctttgggacctggaggattatctagggaaagagcaggc
tttgaagtaagagacgttcaccactcacattatggcagaatgtgtcctatagaaacacca
gaaggtcctaatatagggcttattaactcacttgctacatatgcaaaggttaatgagtat
ggttttatagaaacaccttatagaaaagttgataaaggcacaggagtagttacacatgat
ataatctatatgaccgcagatgaagaagatcattatttaatagctaaagcgaatgagata
ctaaatgatgatggtactttcatagacgataaaattacagtaagagatcaggaagacgta
ttagttgtacctaaagaagaagttgactttatggatgtatctcctagacaattagtttct
gttgcaactgcaatgataccattcctagaaaatgatgatgccagtagagcacttatggga
tctaacatgcaacgtcaagcggttccactattaaaaccagaagcaccaattgttggtacg
ggaatagaatacaaagcagccgtagattctgctgttttaccaaaagcaaaaaaaccagga
gtagttacatacgtaagtgctagcgagataagagttaaaaaagataaaccagacagcaat
ggagatgtagataaatataaactgttaaagtttaaaagatctaaccaaggaacatgtata
aaccaaaaaccattagtttctaaaggggataaagttgacacaaagactgtgttagctgat
ggaccttcaacagacttaggggaaatagcgttaggtaaaaatataagaatgggctttata
acttgggaaggttataactatgaagatgctatgttaatatcagaagaactagtaagagaa
gatgtatttacatctattcatattgaagaatatgaagctgaggctagagacactaagctg
gggcctgaagaaatcacaagagacataccaaatgtaggagaagatgctctaaaagacata
gacgaaagaggtataattagaataggtgcagaggttcgttccggagatattttagtagga
aaagttactcctaagggagaaacagaattgacagcagaagagagactacttagagctata
tttggagaaaaagcaagagaagtaagagatacttctttaagagttcctcatggagaagct
ggaataattgtagatgttaaggtatttacaagagaaaatggagatgaattatcacctggt
gtaaataaactagtaaggtgttatatagctcaaaagagaaaaatatcagtgggggataaa
atggcaggaagacacggaaataaaggtgttatatcaagagtactgccagaagaagatatg
ccatttttaccagatggaagacctctacaaatatgcttaaatcctcttggagttccatca
cgtatgaatattggtcaggtactggaagtgcatttaggattagcagcatcgaaattaggt
tggcatgttgcgactccagtatttgatggtgcaactgaatcggaaatagttgaatgtttg
gagaaagctggctataaaggggacggaaaaactgtattatatgatggaagaacaggagaa
ccttttgacaatagagtaacagttggatatatgtatatattaaaacttgctcacttagta
gatgacaaaatacatgcaagatctactggaccatattcattagttacacagcaaccatta
ggtggtaaagctcaatttggaggacaaagatttggtgaaatggaagtttgggcattagaa
gcttatggagctgcacatacacttcaagaaatacttacagtaaaatcagacgatgtagtt
ggtagagttaaaacttatgaagcaatagtaaaaggtgagaatataccagaaccaggagtt
ccagaatcatttaaagttttaattaaagaactacaagctttatgtcttgatgtaaaagtt
cttaatgatgataacgaagagattgctataaaagaattagcagatgacgatatggtagaa
ttagaagtaaatatagaaggatcagaagactatactgaacctaaacagccaaatgacaac
tatctagaagaagaggaagacaaagataaagataaagataaagaacccaactatgatgat
ttaaattttgatgacttaactaagggattacagctagatgatttcaacgatgaacattaa
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