Thermochaetoides thermophila: CTHT_0042750
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Entry
CTHT_0042750 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0042750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0042750
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CTHT_0042750
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CTHT_0042750
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
ATPase_RavA_C
Motif
Other DBs
NCBI-GeneID:
18258313
NCBI-ProteinID:
XP_006694676
UniProt:
G0SAL9
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
2193 aa
AA seq
DB search
MVPPPRPGTFSPNPTAQPIYTGINHSPHPSHAGALSAAASPSTSSPTGSNSLTKIAVAQV
YLLLSTIKEDKDDPRKWESQIESLRKLIDDHGMDVYTRYFARLVASNAGQIFPGLNRPVT
NPGNYHLLVAEMQKLSHDFSQARKIAESIETGTEDIFRDFDLSTFMEHFQLDALEKTLLA
LAFKLGNRPDLRARADAILSTNYPTFVNILSRANGKHADLHPDFVAELLDRFIQVHPPNF
NAAAKRELEHKVQLRYAQSPEAKPPPSQVLAALDLIRLLAEKPPNALVLYIHRTGPNFTA
DEESCYGFLQNRPPNVHLSEEQVSMALMYTTISQTPHHNPSVLVAALRRILPKDFSWQNV
VSYFDHSGTRVTSAQFLRLYNALLPIALEDGDNFNITRLWGGEWENPETQLSFICAFASL
KPEQLDASTIPGLKQTFTIEEYAEAPQSVKDTAAYAVRHPLVSEAALSAVFNVALHSTHA
SQSTEARRLFQDVVVPNLAIFVVSAFGVPKPWPIMAGETLVSLFDGFLSRSAESDFVMYS
LWKRDKEWVKQRLIDAHVLKPICLPLIFDHAVRQGWLDELVYLPNGFGLDLTALAHAEGY
LDLQEWARRNADRSNEMARTLLQFLMIKANFELNYQRPPEGQPPVKASTPLQVKTVHALL
QILEEWLPKTPVPELIIVQRTCITMYPRLINYGEGFDDIIDANGRDGNALPPAANAKMEE
HYKKMYSDEIQVRDVVQILERYKRSRDPLDQDIFACMIHGLFDEYAHYVDYPLEALATTA
VLFGGIISHRLISDLPLQIGLGMILEAVRDHHPDEPMFKFGLQALMQLFGRLREWPGFCQ
QLLQVPGLQGTEAWKKAEEVVREHEEELARQRNGAGIAHSGGAGNDNKLANGNADDGTGS
EQHYPPFASVNVDPPPPGVVYEDPSEEVQGKVQFVLNNLTDKTMKSSSKELKGMLESKHY
QWFSMHLVEERAKMQPNYHNVYIELVKQFEDKKLWAEVLRQTFVSVQRMLNSESTMQNST
ERNHLKNLAGWLGLLTLARDKPIKHKNIAFKQLLIEAHDTKRLVVVIPFVCKVLIAGANS
NVFKPPNPWLMDIIHLLIELYHNASLKLNLKFEIEVLCKGLNLDHNTIEPSGEILNRPPA
EEVSGDMLHPEGLENFENLSLNGMPGVNTTLASHPAITIPDLGPSLTIPQTEVVNTAKLH
EIVRQALTRALQDIIQPVVDRSVTIAAISTHQMIRKDFATEPDENRVRTAAINMVKSTAG
SLALVTSKEPLRANFANYLRNLSAELPQGLPEGIIMLCVNSNLDLASSVIEKSAEERAVP
EIEEMLEPELEARRRHRLTRPNEPYIDHGLSRWAMTIPHPYKLQPSLHGLNAEQMAIYDD
FARGTRMNTAGTVPAHVSTASDTRSIANEALSDQYSGVSTMPTPAETPAMPHLGAQMQHY
PQAHMGLSNGRPTGLNQIDSRAVAERINKYLEQLTAAATSATEEHFNELPRPHAVLDIID
ALIQLIIKAQQTSEEFAIYALQQISQLLFRQPEGTLLLESLVHVLETIRKIAGPQVSEQV
RQLFHQQPGHLFLSLSLIAALLGTDLLDWKNIDMAMAKALEQRKEGSIDFLEQLMDLVLL
NDTPLALFTDFVRSLEAAWAWIVEDPDLPAAQRFKAKVRAQLPEPPAANLSKEEHAAHLL
EQMEYVFDEWIHLCNNPHATERAAMIFVHQLHSVQLVTNRDEFLLFLRHALDKSVERFEQ
GIHSGASIAESFQAVEALVKLIIIFVKSHQDSEDKDPSAAVAFMDSILALGVLVANSHHV
KRGENFNQRVFYRFFALLLHEVGLLAGHFSKSHYEQIILNFAARLFDMRPNLLPGFACAW
AGLVSHRAFLPVILGLPDEKGWAPFTKLLEQFLGCVGELVKTFTVSSLGKEMYHAALKIL
IVLQHDFPIYLDKFRVQLCQSLPLHATQLVNLILAAIPPNCNSLADPFQAGLKVDKIPDM
KERPPTAFDSAGLLREAGLLDILERMLQNGPSEDGVAQINHAINKSDGESTSFGYVPLGV
NRRLIDAVVARFAEFAINRASSRSDSAIFVAGANDIKTLQMLVTEVSPEARYYLVSSMVN
ELRYPNAYTNYFSQALLDIFGHDMSDPEENLVREQIVRVLLERVLGYWPQPWGLIITILE
LLKNDKYLFFELPFIKATPEVAERFTALARSAA
NT seq
6582 nt
NT seq
+upstream
nt +downstream
nt
atggtccctccgcccagaccaggaacattctcgccaaacccgactgcacagcccatctac
accggcatcaatcactctcctcatccctcacacgctggtgcgctgagtgcggctgccagc
cccagtaccagcagccccactgggtccaactccctgaccaagattgcagtcgcccaggtt
taccttctgttgagcactattaaggaggataaggacgatcctcggaagtgggagtcgcag
attgagtcgctacggaagcttatcgatgaccacggaatggatgtgtacacgagatacttc
gcgcgactggtggcttccaatgccggccagatattccccggccttaacaggccggtgacg
aacccaggaaattaccacctcctggtggctgagatgcagaagttgtcccacgacttctcg
caggctcgtaaaattgccgaatccattgaaactggcaccgaggacattttccgagacttt
gatctctccacctttatggagcacttccagctggatgccctcgagaagacgcttcttgcc
cttgcgtttaaactaggcaaccgacccgatctgcgggccagagccgatgccattctgtcg
acaaactatcctacctttgtcaacatcctgagcagggccaacggaaagcatgccgacctc
cacccggatttcgttgccgagcttctcgaccgcttcatccaggtccatcctcccaacttt
aatgcggctgctaagcgcgagttggaacacaaggtgcaactcagatacgcgcagtcaccc
gaggccaagccgcccccttcgcaagtccttgctgcccttgacctcattcgcctgctcgcc
gaaaagcctcctaatgcgctggttctatacattcaccgcaccggaccgaacttcactgct
gacgaggaatcctgctatggtttcctccagaaccgacccccgaacgttcacctcagtgaa
gagcaggtctcgatggcgctgatgtacacaactattagccagacgccgcaccacaaccct
tccgttctcgtcgctgcccttcgacgtatccttcccaaagacttcagctggcaaaatgtc
gtctcgtacttcgaccacagtggcactagggtaacttcggcacaattcttgcgcctgtat
aatgccctcctaccaattgctctcgaggacggcgacaatttcaacatcacgcggctttgg
ggcggagagtgggaaaatcccgagacccagctttctttcatatgtgccttcgcatccctc
aagcccgagcagttggatgccagtaccattcccggtctcaaacagacctttacgattgag
gagtacgccgaggctcctcagtcggtcaaggatacggcggcgtatgctgttagacatccg
cttgtttcagaggccgctctctctgctgttttcaatgtcgccctccactcgactcacgcc
tcccagagcacagaggccaggcgtttgttccaggatgttgttgttccgaacctcgctatc
tttgttgtgtcggccttcggagtgccaaaaccttggcctatcatggcgggagagactttg
gtgtccctgttcgacggcttcctgagcaggtctgctgagtcggactttgtgatgtacagc
ctttggaaacgggataaagaatgggtcaagcagcggctcatcgatgcccatgtcctcaag
cccatctgtctgcccttaatattcgatcacgcagtcaggcagggctggctcgatgagctt
gtctacctccctaatggcttcggtcttgacctcacagcccttgcgcatgccgaaggctat
ctggacttacaagaatgggcacggagaaatgccgaccgcagcaacgaaatggcacgaacc
cttctccagtttttaatgatcaaagcgaacttcgaactaaactaccagcgtcctcctgag
ggccagcctcctgtcaaagccagcacgccccttcaagttaagacggtccacgccttgctc
cagatcctggaagagtggctaccgaagacgccggtccctgaattgatcatagtccaaagg
acctgtatcactatgtatcctcgcctcatcaactacggagaaggctttgacgacatcatc
gatgccaacgggcgagacggcaatgcacttcccccggctgctaacgccaagatggaagag
cactataaaaagatgtatagcgatgagatccaagtccgcgacgtcgtccagattctggag
cggtataagcgttcgcgcgatcctcttgaccaggatatcttcgcttgcatgattcatggt
ttattcgacgaatatgcacactacgtcgactatccgctcgaggctctggctaccacggcc
gttctcttcggtggcatcatctcgcaccgactaatttccgacctgccgctccagatcggg
ttagggatgatcctcgaggccgttcgtgatcatcatcccgatgagcccatgttcaagttt
ggcttgcaagcgctcatgcagctctttggtcgtttgcgggagtggcccggcttctgccag
cagcttctccaggttcctggccttcaggggacagaagcctggaaaaaggcggaggaagtt
gttcgcgaacacgaagaggagctggcacgtcagcgcaacggtgctggtattgctcattct
ggcggagctgggaatgataataagctagctaatggtaacgcggatgatggaactggatcg
gaacagcattatcctccattcgcctcggtcaacgtcgaccctcccccgcctggtgttgtc
tatgaggatcccagcgaagaggtgcagggcaaggtccaattcgttctcaacaaccttacc
gacaagaccatgaagtcctcttctaaggagctcaagggaatgctggaatcaaagcactat
caatggttctccatgcacttggtcgaggaacgcgccaaaatgcaaccgaactatcacaac
gtttatattgagctcgtgaagcagttcgaggacaagaagctatgggctgaagttttgaga
caaacgtttgtcagcgtccagcgcatgttgaactcagaatcaactatgcagaactcgact
gagagaaatcatctcaagaacctggctggctggctcggactcttgacccttgcccgtgac
aaacctatcaagcacaagaacattgccttcaaacaactgctcatcgaggcgcacgatacg
aagcgtctggttgtcgtcatcccattcgtttgcaaggttctcatcgccggcgcaaactcg
aacgtttttaagcctcccaatccttggttgatggacatcatccacctcttaattgaactt
tatcacaacgcaagcctcaagcttaatctaaagttcgagattgaggtcctttgcaagggt
ctgaatctagaccacaataccattgagccatcgggtgagattctcaacaggcctcctgcc
gaagaagttagcggcgacatgctgcatcctgagggcctcgagaacttcgagaacctgtcg
ttgaatggcatgccgggtgttaatacaacccttgcatctcatcctgcaatcaccattccc
gacttgggccctagcctgacaatccctcaaactgaggtcgtcaatactgccaagctgcac
gagatcgtccgccaggctctgacgcgcgccctccaagacatcatccagccagtcgtcgac
cgttctgtcacgattgcggcaatctcgacacaccaaatgattcgaaaggacttcgctacg
gaaccggatgagaaccgagtgcgcacagccgctatcaacatggtgaagtcgactgcaggg
agcttggcattggttacgtccaaagagccactgcgggccaactttgccaactatttgcgg
aatctctcggccgagcttcctcaggggctgcctgagggcattattatgctctgcgtcaat
tctaaccttgacttggcttcaagcgtgattgaaaagtctgccgaagagcgcgccgtccca
gagatcgaggagatgctcgagcctgagctagaagctagacgtcgccaccgtctcacccgc
ccgaacgagccgtacattgatcacggcctaagccgctgggcgatgacaatcccccatccc
tacaagcttcagcctagcctgcacggtctgaatgccgagcaaatggcgatatacgatgac
ttcgcgcgtgggacaaggatgaacactgccggtactgttcctgcccatgtctcgaccgca
tcggatacccggtcgatcgcgaatgaagccttgagcgatcagtacagtggagtcagcact
atgccgactcccgccgagacaccggccatgcctcatcttggtgcacagatgcaacactat
cctcaagcgcatatgggcctgtctaacgggcgaccgacaggcctcaaccaaatcgattcc
agggctgttgccgagcggatcaacaagtacctggagcagttgactgctgccgccaccagc
gctacggaggagcatttcaacgagcttcctaggcctcacgctgtcctggatatcatcgat
gcgctgatccaactaattattaaggctcagcaaacctccgaggagtttgctatttatgcc
ctgcagcagatttcacagctcctcttccgccagcccgagggcacgctcctgctggagagc
ttggtccatgtccttgagacgatccgcaagattgcaggtccccaggtcagcgagcaagtc
cgccagttgttccatcagcaacccggtcacctgttcttgagcctttctctcatcgctgca
ctgcttggcaccgatcttcttgattggaagaacatcgatatggccatggcaaaggcacta
gaacagcgcaaggagggttctatcgattttctcgagcagctgatggatctcgtgcttctg
aacgatactccgctggcgctcttcacggactttgttcggagcttggaggcagcatgggca
tggattgtggaggatcctgacctacctgccgcacagcggttcaaggccaaggtgcgggct
caactccccgagcctcccgcagcgaatttgtcgaaggaagagcatgcagcccacctgctt
gaacagatggaatatgtgttcgatgagtggattcatctctgcaacaaccctcatgccacc
gaacgggctgccatgatctttgtgcaccaactgcattcggttcagctggtcaccaatcgt
gacgagttcttgctcttcctccgtcatgccttggacaagtcggtggagcggttcgaacaa
ggcattcattccggtgctagcattgcggaaagcttccaagctgttgaggccctggtcaag
ctcatcatcattttcgtcaagtcccaccaagacagcgaggataaggacccgtctgctgcc
gtggccttcatggattcgattcttgccttgggcgttttggtcgccaacagccaccacgtc
aagcgcggcgaaaacttcaatcagcgcgttttctaccgctttttcgccctcctactccat
gaggtgggactactggctgggcatttctccaagtcccactacgagcagatcatcctcaac
ttcgccgctcggctcttcgacatgcggccaaacctccttcccgggttcgcctgcgcctgg
gctggtcttgtgagtcaccgtgctttcctcccggtcatccttggtctgccggatgagaaa
ggctgggctccattcaccaagctgctcgaacaattccttggctgcgttggcgagctggtt
aagactttcaccgtctcctccttgggcaaggaaatgtatcacgccgcgctgaagattctg
attgttctccaacatgacttcccgatttacctggacaagttccgcgtgcagttgtgccag
agcctgccactccacgctacccagcttgtcaacttgatcctagcggccattcctccgaac
tgcaacagcctggctgatcctttccaggcaggcctcaaggtagacaagattcctgacatg
aaggagcgccctcccaccgcgttcgactctgcgggcctgctgcgcgaagctggtcttctc
gacatattggaaaggatgcttcagaatggcccctcagaagatggtgttgcccagatcaac
catgcaatcaacaagtccgacggcgagtcaacaagtttcggctatgttcccctgggcgtg
aaccgccgcctgattgatgcagtagtggcgcgttttgctgagttcgctatcaatcgggct
tcatcccgcagcgattcagccatcttcgttgccggtgccaacgacattaagaccctgcag
atgctagttaccgaggtttctcccgaagctcggtactacctggtttcaagcatggtaaat
gagttgcggtacccaaatgcgtacaccaactacttcagccaggccctcctggacatcttt
ggtcacgatatgtccgacccagaggagaatctggttcgtgagcagatcgttcgcgtgctg
ttggagcgtgttcttgggtactggccgcagccatggggtctcatcatcactatccttgag
ctgctcaagaacgacaagtacctgttctttgagctgcccttcatcaaggccaccccggag
gttgctgagaggttcactgctttggctcgctcagctgcttag
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integrated database retrieval system
