Crotalus tigris (Tiger rattlesnake): 120312280
Help
Entry
120312280 CDS
T08476
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 3 subunit alpha-like
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ctig04040
]
120312280
Ion channels [BR:
ctig04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120312280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
FraC
Motif
Other DBs
NCBI-GeneID:
120312280
NCBI-ProteinID:
XP_039208731
LinkDB
All DBs
Position
Unknown
AA seq
2064 aa
AA seq
DB search
MAQTLLVPSGPDSFHFFTRESLAAIEKRCTEEKAKRPKQEHRDNDDEHGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYSNKQTFIVLNRGKAIFRFSATSALYILTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPEWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGKEWXLTK
GQTPGIFSCFLCVVIVFVCELPYYRYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLIWPPDNSTFEINVTSYFN
STMGENGTYVNTTVTTFNWKEYIEDESHFYVLEGQRDALLCGNSSDAGHCPEGYVCIKAG
RNPNYGYTSFDTFSWAFLSLFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLI
NLILAVVAMAYEEQNQATMEEAERKEAEFQQMLEQLKKQQEEAQTTAAVAAASVASRDFS
GVGGLGELLESSSEASKLSSKSAKDRRNKRKKKKQKEFSEVGDKEEVERFPKSESEDSIR
RGGRLSYEKRTSTHQSLLSFRGSLFSPRRSSRTSIFSFRGRAKDIGSENDFADDEHSTLE
DNESRRDSLFVPNRQTSERRNSTTSQISLSSKMVPVLPANGKMHSTVDCNGVVSLMGGPP
ALPSPTGQFLPEGTTTETEIRKRRLSSYQISMELMEESAARQRAMSIASILTNTMEELEE
SRQKCPPCWYRFANVFLIWDCWSPWLNVKHVMNLIVKDPFVDLAITICIVLNTLFMAMEH
YPMTSDFYQVLSVGNLVFTGIFTAEMIFKIIAMDPYYYFQEGWNIFDGIIVSLSLMELGL
ANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGM
QLFGKSYKECVCKIAEDCELPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCL
IVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVARIQKGIDYIKKT
LGEVVQKSTKQKTIDDIKVLEELNHKKDVYISNHTMIEITKEAHYQRDGNGTTSGVGTGS
SVEKYIIDENDYMSFINNPGLTVTVPIAVGESDFENINTEEFSSESDLEGSKEKINATSS
SEGSTVDVALPGEGEQAEIEPEEALEPEACFTEGCIQKFPCCQVSIEDGKGKIWWNFRKT
CYSIVEHSWFETFIVFMILLSSGALAFEDIYVEQRKTIKTVLEYADKVFTHIFILEMLLK
WVAYGFQIYFTNAWCWLDFLIVDVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRF
EGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGEMFNVSDV
NNKTECDELIHNNQPARWKNVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNVEEQ
PYYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNA
MKKLGSKKPQKPIPRPGNKFQGLVFDFVTKQAFDISIMILICLNMVTMMVETDDQSKEME
INLSRINLVFIILFTGECILKLISLRHYYFTIGWNIFDFIVVILSIVGMFLAEIIEKYFV
SPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMS
NFAYVKREVGIDDLFNFETFGNSMLCLFQITTSAGWDGLLAPILNSGPPDCDPEIDHPGS
SVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWERFDPDASQFMEYAKLSDFAASLDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFA
FTKRVLGESEEMDLLRVQMEERFMAANPSKLSYEPITTTLKRKQEEVSAAIIQRTFKRFL
LKQKVKNVTSMYNKEKCRDGDLLPIKDMTSDKFNGNSSSEKTDESSSTTSPPSYDSVTKP
NKKKYEKGKTDRDFKGKDIRISKK
NT seq
6195 nt
NT seq
+upstream
nt +downstream
nt
atggcacagacactgctggtaccatcgggacctgacagtttccacttttttactagagaa
tctcttgcagctattgaaaaacggtgcacagaagaaaaagcgaaaaggcccaaacaagaa
catagggataatgatgatgagcatgggccaaaaccaaatagtgacttggaagcaggaaaa
acacttccttttatatatggcgatattcctcctggaatggtgtctgaaccattggaggat
ctggacccttactatagcaataaacaaaccttcattgtgttgaatagagggaaggcaatt
ttccgattcagtgccacatctgccttgtacattttaacacctttcaatcctctcagaaaa
attgctattaaaattttggtacattcattattcagcatgcttattatgtgcactattttg
accaactgtgtatttatgaccatgagtaatcctccagaatggacaaagaatgtagagtac
acattcactggaatttatacctttgaatcacttataaaaatccttgcaaggggcttttgt
ttagaaggatttacttttcttcgagatccctggaactggcttgacttcagtgtcattttg
atggcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcaga
gtattgagagctttgaaaactatttctgtaatcccaggtaaggagtggnncttgacgaag
ggccagacccctggtattttcagctgttttttgtgtgttgtcattgtgtttgtgtgtgaa
ctcccctattacagatatgtgacagagtttgtggacctgggcaatgtctcagcgttgaga
acattcagagttctccgggcattgaaaacaatatcagtcattccaggcctgaagacaatt
gtaggggccctcattcaatctgtgaagaagctctcagatgtcatgatcctcaccgtgttt
tgtcttagtgtatttgcactaatagggctccagcttttcatggggaacctgaggcacaaa
tgcctgatttggccaccggacaattctacttttgaaataaacgtcacttcctacttcaat
agcacaatgggagaaaatggtacctatgtaaatacgacagtgaccacttttaactggaag
gagtacattgaggatgaaagtcatttttatgttttggaaggacaaagagatgcacttctt
tgtggtaatagctcagatgctggccattgcccagaaggatatgtgtgtataaaagctggt
agaaaccccaactacggctacacaagctttgacaccttcagctgggccttcttatcactg
tttcggctgatgactcaggactactgggaaaatctttaccaactgactctacgtgctgct
ggcaaaacatacatgattttttttgtcctggtgattttcttgggttctttctacctgatc
aacttgatcctggctgttgttgccatggcctatgaagagcagaatcaagccaccatggaa
gaagctgagcggaaagaggcagagttccagcagatgctggagcagctgaaaaaacagcaa
gaagaggctcagacgacggcagctgtggccgcagcatcagttgcatcaagagatttcagc
ggcgtgggtggattgggggagctcttggaaagctcttcagaggcatctaaattaagctca
aagagtgctaaagacagaaggaacaaaaggaaaaaaaagaagcagaaggagttttcggaa
gtaggagataaggaagaagtggagaggtttcctaaatctgaatcggaagacagcatcaga
aggggaggtcgcttgtcctatgaaaagagaacctcaactcaccagtctttgctgagcttc
cgtggctccctgttttccccacgacgcagtagcagaacaagtattttcagcttccgaggg
agagcaaaagatattgggtcagagaatgactttgctgatgatgaacacagcactcttgaa
gacaatgagagcaggagagattctctctttgttccaaacagacaaacaagcgagcgtcgc
aacagcactaccagtcaaatcagcctgtcatcaaagatggtgccagtacttcctgcaaat
gggaagatgcacagtacagtggattgcaatggtgttgtttccttaatgggaggacctcct
gcactcccttcacctactggacagtttttaccagagggtacaacaactgaaacggaaata
agaaaaagaagattaagctcttatcaaatttctatggaactgatggaagaatctgcagca
aggcagagagccatgagtatagccagcatccttacaaatactatggaagaacttgaagaa
tcccggcagaagtgtccgccatgctggtatagatttgcaaatgttttcttgatttgggat
tgctggagcccttggttaaatgtaaagcacgttatgaatttgatagtgaaggatccattt
gtcgatcttgctattactatttgcatagttttgaatacactgtttatggccatggaacat
tacccaatgacttctgatttctaccaagtactttcagtgggaaatctggtttttactggg
atcttcactgcagaaatgatcttcaaaataattgccatggatccttattattatttccaa
gaaggctggaatatttttgatggcatcatagtcagcttgagtttgatggagttgggtctt
gcaaatgtggaaggactgtcagtcctaagatccttcagactgcttcgtgttttcaaatta
gcaaaatcctggccaacgttaaatatgctgatcaaaattattggcaactctgtgggtgct
ttgggaaatctgactttggtcctggccatcattgtcttcatatttgctgtggttggtatg
cagctctttggtaaaagctacaaggaatgtgtgtgcaagattgcagaagattgtgaactc
cctcgctggcacatgaatgattttttccactctttcttgatcgtgttccgagttctttgt
ggagaatggatagaaaccatgtgggactgtatggaggttgcaggccaatccatgtgcctt
attgttttcatgttggtcatggtgattgggaatttagtggtattaaacctgtttctagcc
ttgctcctgagctccttcagttcagacaatcttgctgctactgatgatgataatgagatg
aacaatctccagattgctgtggcgaggattcagaaaggaatagattacattaagaaaaca
ttgggagaagttgtccaaaaaagcacaaagcagaaaactatagatgatatcaaagtcctt
gaagaactaaaccacaagaaagatgtctacatttccaaccacaccatgattgaaataact
aaggaagctcattatcagagagatggaaatggaacgaccagtggtgtaggaacaggcagc
agtgtggaaaaatatattattgatgaaaatgattacatgtcatttataaacaatccaggc
cttactgtaactgtaccaattgcagttggagagtcagattttgaaaatataaacacagaa
gaatttagcagtgaatctgacctggaaggaagcaaagagaagataaatgccaccagttca
tctgaaggcagtactgtggatgttgccctgccaggagagggggagcaggcagagatcgaa
cccgaagaagctcttgagcctgaagcctgtttcacagaaggctgcatccaaaagttccca
tgttgtcaagtgagtatagaagatggcaaaggaaaaatctggtggaattttagaaaaacc
tgctacagcattgttgaacatagctggtttgaaacattcattgtatttatgattctcctc
agcagtggtgctctggcctttgaagacatatatgttgaacagcgtaagactatcaagaca
gtgctggaatatgcagacaaggtcttcacgcacattttcattctagaaatgcttttgaag
tgggtggcctatggcttccagatttatttcacaaatgcctggtgttggctggatttttta
attgttgatgtttcattggtcagtttaatagccaatgcactaggctattctgaattaggg
gccattaaatcacttcgaacactaagagcattgaggcctttaagagctctgtcacggttt
gaaggaatgagggtggttgttaatgcccttattggagcaattccctccattatgaatgtg
cttctggtttgtctcatattttggctgatctttagtatcatgggtgtgaatctctttgct
ggcaagttctaccattgcgttaataccacaacgggtgaaatgttcaacgtcagcgatgtc
aacaataaaacggaatgtgatgagctcatacacaacaatcagccagcccgatggaaaaac
gtgaaagttaactttgataacgttggggctggttatcttgctctgcttcaagttgctact
tttaaaggctggatggatattatgtatgcagctgttgattcacggaatgtagaagaacaa
ccctattatgaggacaacttatatatgtatctttattttgttatcttcataatctttgga
tcattttttaccttaaacctcttcattggtgtcattatagataatttcaatcagcaaaaa
aagaagtttggaggacaagacatttttatgacagaggaacagaaaaaatattacaatgca
atgaaaaagctgggctccaaaaaaccacaaaagccgataccgagaccagggaataaattt
caaggattagtctttgactttgtaaccaaacaagcctttgatatcagtatcatgattctt
atttgccttaatatggtcaccatgatggttgaaacagatgaccaaagtaaagaaatggaa
attaacttatccaggattaacctggtattcataattcttttcactggagaatgtatactc
aaactgatttcacttcgtcattattattttaccattggctggaatatttttgattttatc
gttgtcattctctccattgtaggaatgttcctcgcagagattattgagaaatactttgtg
tcccccactttgttccgagtaattcgacttgcccggataggtcgaatcctgcgtctgatc
aagggggcaaaagggatccgcactctgctctttgccttgatgatgtctctccctgccttg
ttcaacattggtctcctccttttcctggtcatgttcatctatgccatatttggaatgtcc
aactttgcctacgtgaagagagaagttggcattgatgacttgttcaactttgaaactttt
ggcaacagcatgctctgcctctttcagatcaccacctctgctggctgggatggcctgcta
gcacccatcctgaacagcgggcctccagactgcgacccggagatagaccacccgggtagc
tcagtcaagggagactgtggcaatccttcggttgggattttcttcttcgtcagctacatt
atcatctcatttttagttgtagtgaacatgtacattgctgtcattttggagaacttcagc
gtcgctaccgaagaaagtgctgagcctttgagcgaggatgattttgagatgttctatgag
gtctgggaaaggtttgatccagatgcatcccaatttatggaatatgctaaactctctgat
tttgctgcttcgttggatcctcctcttctgattgcaaaaccaaacaaagttcagctaatt
gcgatggacctgcccatggtgagtggtgatagaattcactgccttgacatcttgtttgcc
tttacaaagcgtgttttgggagaaagcgaagaaatggatttactgagagtgcaaatggaa
gagcgcttcatggcagccaatccatcaaaactttcatatgaaccaatcaccaccacatta
aagcggaaacaggaggaggtgtccgctgccatcattcaacggactttcaagcgtttcctc
ctgaaacagaaggttaaaaatgtaacttctatgtacaataaagaaaaatgcagagatggc
gacctcctaccaatcaaagacatgacctctgataagtttaatgggaattccagttcagag
aaaacagatgagagctcctcaaccacctctcccccttcctatgatagtgttactaagcca
aacaaaaagaaatatgaaaagggcaaaacagacagagactttaaaggtaaagatataagg
attagcaaaaagtga
DBGET
integrated database retrieval system
