Crotalus tigris (Tiger rattlesnake): 120312612
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Entry
120312612 CDS
T08476
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120312612 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120312612 (CNOT1)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120312612 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120312612 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
120312612
NCBI-ProteinID:
XP_039209480
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIENPLHYQKSLKPSPHLFIQLSKVIK
LSKVQEVIFGLALLNSFNPDLQVFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRSIITQFGVGEVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGRDKNDGTQTHTWNVEVLIDVLKELNPTLNFKEVTYE
LDHPGFQIRDSKGLQIVIFGVQRGLGLEVFPVDLIYRPWKHAEGQLSFIQYSLINPEIFC
FADYPCHTVSTEILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVTQELSETILTMVANCSNVVNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAAGMAS
LSLGGPTVPHTQSVPGFPPNLSSAFSTPQSPAKAFPPLSTQNQNTPFSGIGGLSSQLPVG
GLTTGSLGIGTGTLGLPAVNNDPFVPRKLNTSGLNQPTFQQSKVKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFTSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQAPAKTPLTGQVSTVVTTATTTTTVAKTTVAPVGRVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGSLLKDKDRLKNLDEQLSAPK
KDIKHTEELPPITTTTTSTTSATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDSSQPTGILAQPMKQAWATDDVAQIYDKCMAELE
QHLQSVPHTLAMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHMTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELGEREMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
actaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaaccggcacgga
cctgaagcagacaggcatttgctacgctgtctcttttctcatgtggatttcagtggcgat
ggtaaaagtagcggtaaagatttccaccagactcagtttctgatccaggagtgtgcatca
ttgattacaaagccaaacttcatttcaacactgtcctatgctattgaaaatccattgcat
tatcaaaagagtcttaagccatcaccccatctattcatccaactgagcaaagttatcaaa
ttaagcaaagttcaagaggttatttttggtcttgctttgttgaactctttcaatcctgat
ctacaagttttcgctgctcagtttattaaacagaaacttcctgatcttctgcgctcatat
attgacgcagacgtcagtggcaatcaagaaggtggctttcaagatattgcaatagaagtc
ttgcacctccttctttcccatcttctttttgggcagaagggagcctttggggttggacag
gaacaaattgacgctttcctcaaaacattgcgcagagatttcccccaggaacgttgccct
gtggtgcttgcaccactcttataccctgaaaaacgggacattctaatggataggatcctg
cccgactctggagggatagcaaaaaccatgatggagagttctcttgcagacttcatgcag
gaagttggctatggcttttgtacgagcgtggaagaatgtcgcagtatcatcacacagttt
ggtgttggggaagttacagctgcccaggttgccagagttttgggaatgatggctcgaaca
cactctggattgacagatggcattccattacagtctatttctgctcctggaagtggaatt
tggagtgatggaagagataaaaatgacgggacacagactcatacgtggaatgttgaagtt
ctgattgatgtgcttaaagaactgaacccaaccttaaacttcaaggaagtaacctatgag
ctggaccaccctggatttcaaattcgtgatagcaagggcctgcaaattgtaatcttcgga
gttcagcggggattaggtttggaggtttttccagttgacctcatatacagaccttggaaa
catgctgaaggccagctctcattcattcagtattccctcattaacccagagatcttctgt
tttgccgactatccctgtcatactgtttccacggagatcttgaaagcaccaccagaggat
gataatcgagaaattgccacatggaagagcctagatttgattgaatccttgttgcgtttg
gcagaggtgggccaatatgaacaagtcaagcagctcttcagcttccccatcaagcactgt
ccagatatgttggtcttggctttgctgcagatcaacacttcttggcatactttgcggcat
gaactcatctccacacttatgcccattttccttggcaatcacccaaattctgctatcatc
ttgcattatgcgtggcatgggcagggtcagtccccttcaattcgtcaactcatcatgcat
gccatggcagaatggtacatgagaggagaacaatatgaccaagcaaaattatcacgtatt
ttagatgtggcccaagacctgaaggcattgtctatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcccttgcttctcggcgggaatacctcaaactagacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaagcgtgtatgactttcttg
aagagaagatgtccctctatcttgggtggtcttgctccagagaaagaccagcccaaaagt
gctcaacttccaccagagactctagcaacaatgctagcttgtcttcaggcttgtgctgga
agtgtaacacaagagctgtcggaaactattctcaccatggtagccaactgcagcaatgta
gtgaacaaagccagacagccaccgcctggtgtaatgcccaaaggacgtccccccagtgct
agcagcctggatgccatctcccctgtgcagattgatccgcttgctgctgggatggcatct
ctcagtttaggtggcccaacggttcctcatacccagagtgtgcctggatttcctccaaac
ttgagttctgcttttagtactcctcagtcaccagcaaaagcatttccaccgctttccaca
caaaaccagaacacaccttttagcgggattggtgggctctcttcacagcttccagtaggt
ggtctcacaacaggtagtctgggtatcggaactggaacccttggcctccctgcagtgaat
aatgatccatttgtgccaagaaagctgaacacatcaggactgaaccagcccacattccag
cagagtaaggtgaaaccttctgacttatctcaggtatggccagaggctaatcagcacttt
agcaaagagattgatgatgaagccaacagctattttcagcgtatttataatcacccaccc
catcccaccatgtctgtagatgaggtgttagaaatgctacagagatttaaggactctaac
attaaacgggagcgagaagtatttaactgtatgctgaggaatttatttgaagaatatcgt
tttttcccgcaatatcccgataaagagctccacataacagcctgcctctttggagggata
atcgagaagggattggtgacctatatggccctgggcctggccctgcgctacgtgcttgaa
gccttacgaaagccttttacatctaaaatgtactattttggaattgctgcattagataga
tttaaaaatagattgaaggactaccctcagtattgtcagcacctggcttctattagtcac
tttatacagttccctcatcacctgcaggagtacattgaatatggacagcaatcaagagat
cctcccgtgaagatgcaggggtccatcaccacgcctggaagtattgctctggcccaggct
caggcccaggcccaggccccagcaaaaacgcctctcactggccaggttagcactgtagtc
accaccgccaccaccaccacgactgtggcaaagacaaccgttgcgcctgtgggcagagtc
agcttcaagaaagatgtgccaccttctattaatacaaccaacattgatactctgctggtg
gccacagatcaaacagagagaattgtagaacctcctgaaaatgtgcaggaaaagattgct
tttatctttaataatttgtctcaatccaacatgactcagaaggttgaggaactgaaggaa
acggtgaaagaagaattcatgccttgggtttcgcaatatctcgtgatgaagagagttagc
attgagccaaacttccatagtctttattcaaatttccttgacactcttaaaaatccagaa
tttaataaaatggttttgaatgaaacatacagaaatatcaaggtgctgcttacatcggat
aaagctgctgctaacttctcagaccgttcattgctgaagaacctgggtcactggctgggg
atgataacactggcaaagaataaacccatcttgcacacggacttggatgtcaaatctttg
ctgctagaagcttatgtaaaaggacagcaagaattgctgtatgtagtgccatttgttgct
aaagtattggaatccagcgtaagaagtgtggttttcaggcccccaaatccatggaccatg
gcaatcatgaatgttcttgcagagcttcatcaggagcatgacttaaagctgaatctgaag
tttgaaattgaagtgctctgcaaaaacctggcccttgacatcaatgatctaaaacctggt
agtctcctaaaagacaaggaccggttgaaaaacctggatgaacagttatctgctccaaag
aaggatataaaacacacagaagaactaccaccaattactactaccactacttccacaact
tcagctaccagcactacatgcacagctactgttcctccacagccacagtacagttaccat
gatatcaacgtatactccctgggagggctagctccacacattactctaaaccccactatt
cccctgttccaagcccacccacagttaaagcagtgtgtgcgccaagccatagagcgtgca
gttcaagaactggttcatccagtagtggaccgctcaattaaaattgccatgactacttgt
gaacagatagtgaggaaggattttgcgctggactcagaggagtcacgcatgcgtgtggca
gcgcatcacatgatgcggaacctgacagctggcatggccatgattacctgcagggagccc
ttgctgatgagcattgcgaccaacttgaagaacagctttgccactgcgttgcgggcagct
tcaccacagcagagggagatgatggagcaggcggcagcccagttggctcaagataactgt
gagttggcctgctgcttcattcagaaaacagcggtggaaaaagcaggtcctgaaatggac
aagaggctggcgactgaatttgagctccgaaaacacgcccggcaagagggccgcaggtac
tgtgatcctgtggttttgacttaccaggctgagcgtatgccagaacagatcaggctgaag
gttggtggtgtggacccaaagcagctagctgtatatgaagaatttgcacggaatgttcct
ggtttcctgccaacaaatgattcaagccaaccaacaggaatcctggcccagcctatgaag
caagcctgggcaacggatgacgtggcacagatctatgataaatgcatggcagagctggag
cagcacctgcagtctgttccccacactctggccatgaatccccagacacaagcacttcgg
agccttttggaggctgtcgttgtggctcgtaattctcgagatgctattgcagcccttgga
ttgctacagaaggccgttgaagggttattagatgccaccagtggtgcagatgcagacctc
ctcctccggtaccgtgaatgccatttgctggtattgaaagccctgcaagatggccgtgcc
tatggctctccctggtgcaataagcagataacaagatgcctgattgagtgtcgagatgaa
tataaatacaatgtagaagcagtggagctcctgattcgtaaccatctagttaacatgcaa
cagtacgaccttcacctggctcagtccatggagaatggtttgaactacatggcagtggcg
tttgcaatgcagctggtgaagatcctgctggtggatgagagaagcgtggctcacatgaca
gaagcagatttgttccataccattgaaactctgatgaggataaatgctcactccagaggc
aatgctccagaagggttgccacagttgatggaagtggtacgatccaactatgaagccatg
attgatcgtgctcatggtggacccaactttatgatgcattctgggatctctcaagcttca
gaatatgatgatcctccgggcctgagggagaaggcagaatatctcttgagggaatgggtg
aatctttaccattctgcagccgctggtcgggacagcaccaaagccttttctgcatttgtt
ggacaggtagaacttggggaaagagagatgcatcaacaagggatcctgaaaactgatgac
ttgatcacaagattctttcgtctttgcactgaaatgtgtgttgaaatcagctatcgtgct
caagctgagcagcaacacaaccctgctgcaaaccctactatgatccgtgccaagtgctat
cacaacttggatgcctttgtgcgccttattgcactgttggtgaagcactctggagaggct
accaacacagtcacaaaaatcaacctgcttaataaggttcttgggatagtggtgggagtc
cttttgcaggatcatgatgttcgtcagagtgaatttcagcaacttccctaccatcgcatt
ttcatcatgttactgttagaattaaatgctcctgaacatgtcctggaaactatcaacttt
cagaccctgacagctttctgcaatacatttcacatcctgcgacctacaaaagctccaggt
tttgtttatgcttggttagaactgatctcccatcggatatttattgcaaggatgctggca
catacaccacagcagaagggttggcccatgtatgcacaactcttgattgacctgttcaaa
tatttggctcccttcctgagaaatgtggaacttgccaagcctatgcaaattttgtacaag
ggaacactgcgtgtgttactggtattattacatgatttcccagaattcctttgtgattac
cactatggattttgtgatgtgattcctccaaactgtattcagctaaggaatctgattttg
agtgcctttccacgtaatatgaggcttcctgaccccttcactcccaaccttaaggtggac
atgctgagtgagatcaatattgctccacggatcctcaccaattttactggtgtgatgcca
cctcagttcaagaaggatttggattcctatctcaaaactcgttctccggtcacgttcctc
tccgacctacgcagcaacttgcaggtatcaaatgagcctggcaatcgttacaatattcag
ctgatcaatgccctggtgctttatgtcggtacacaagcgattgcacacattcataacaag
ggcagcacgccatccatgagcaccatcactcattcagcccacatggacatcttccagaac
cttgctgtcgatctggacacagaaggtcggtacctcttcctgaatgcgattgccaatcag
ttgcggtatcccaacagccacacgcactacttcagctgcaccatgctttacttatttgca
gaagccaatacagaagctattcaagagcagatcaccagggtcttgttagaacgactgatt
gtaaataggcctcatccctggggtctcttaatcaccttcattgaattgattaaaaatcca
gcatttaaattctggaaccatgagtttgttcactgtgctccagaaattgaaaaactgttc
cagtcagtcgcacagtgttgtatggggcagaaacaggcacagcaagtaatggaaggaact
ggagccagctag
DBGET
integrated database retrieval system
