Crotalus tigris (Tiger rattlesnake): 120318783
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Entry
120318783 CDS
T08476
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120318783 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctig03041
]
120318783 (SNRNP200)
Enzymes [BR:
ctig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120318783 (SNRNP200)
Spliceosome [BR:
ctig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120318783 (SNRNP200)
Complex C
U5 SnRNP specific factors
120318783 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
DUF603
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
120318783
NCBI-ProteinID:
XP_039222774
LinkDB
All DBs
Position
Unknown
AA seq
2135 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDEDLEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIMSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCSLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERCRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGSEEQLVPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDMNLLLCAPTGAGKTNVALMCMLREIGKHINLDGTINIDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVEPTKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEVVLGNVQNAKDAVNWLGYTYLYIRMLRSPNLYGISHDDMKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETIQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDENVFVGAPTGSGKTICAEFAILRMLLQNVEGRCVYIT
PMEALAEQIFLDWYEKFQERLLKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIV
FVPSRKQTRLTAIDILTTCASDVQRHRFLHCTEKDVAPYLDKLNDNTLKETVVNGVGYLH
EGLTSMERRVVEQLFSSGAIQVVVASRSLCWGMNLAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKC
ISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTEKGVES
VFDIMEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKDGIRSGGPVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGT
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcccggagcctgcagtacgagtataaggcgaactctaatcttgtg
cttcaagctgaccggtccctgattgatcggaccagacgtgatgagcctacaggagaggtc
ttgtcgttggttgggaagctggagggcacccggatgggtgataaggcccaacggaccaaa
ccccagatgcaggaagagagacgagcaaagaggcgcaaacgtgacgaagacaggcatgac
ataaacaagatgaaaggctacacgctgctttccgagggtattgatgaaatggtaggaatc
atctataaacccaaaacgaaggagactcgggaaacctatgaagttttactgagcttcatt
caagcagctcttggtgatcagcctcgagacattctctgtggagctgccgatgaagtgctg
gctgtcctgaaaaatgagaaactacgagacaaggaacggcgaaaagaaattgacctcttg
ctggggcagacagatgatacccgttaccatgtactggttaatctgggcaagaaaatcaca
gattatgggggagacaaggagatccagaatatggatgacaacattgacgagacttacgga
gtgaatgtacagtttgagtctgacgaagaggagggcgatgaggacgtctatggcgaagtg
cgggacgaagcctctgacgaagacctggaaggcgatgaagcggtcgttcgctgtaccctc
tcagccaatctggtggcttccggtgagctgatgagctccaagaagaaagacctgcatccc
agagacatcgatgccttctggcttcaacgccagctgagccgtttctacgacgacgccatc
atgtcccagaaaaaggcagacgaagtgctggagattttgaagacggccagcgatgaccga
gaatgtgagaatcagctggttctgctcctgggttttaacacatttgactttattaaagtc
ctgagacaacacagaatgatgatcctctactgtagtctcctggcaagtgctcagagcgaa
gctgagaaggagaggattatgggaaagatggagtcagaccctgagttgtccaaattcctg
tatcagctgcatgaaaccgagaaggaagatttgatccgggaagaacgctgtcgccgggag
cgtgtccgtcagtcccgcatggacactgacctggagaccatggatctggaccaaggagga
gaggccctggctcctcggcaagtgttggacctggaggacctcgtgtttgcccaaggaagc
cacttcatggccaacaagcgatgccagctgccggatggttctttccgcaagcagcgcaag
ggctacgaggaagttcacgtccccgcccttaagcccaagccctttgggtcggaagagcaa
ctcgttcccgtggagaagctccccaaatacgcacaggctggatttgaagggttcaaaaca
ctcaacaggattcagagcaaactctaccgggctgcgctcgagacggacatgaacctgctc
ctgtgtgcgcccacgggtgcagggaagaccaacgtggctttgatgtgcatgctgcgtgag
atcggaaagcacatcaatcttgacgggacaatcaacatcgatgacttcaaaattatctac
attgcacccatgaggtccttagtgcaggagatggtgggcagctttggaaagcgcttggcc
acttacggcatcaccgtggctgagttgactggcgaccaccagttgtgcaaggaagaaatc
aacgctacccagatcatcgtctgcaccccagaaaaatgggacatcatcacgcgcaaagga
ggggagcgcacctacacccagttggtgcgcctcattatcttggatgagatccacctcctc
catgatgaccgggggccagttctggaagccttggtggccagaaccatccgcaacatcgag
atgacccaggaggacgtccggctggttgggctcagtgccaccctgccaaactacgaggat
gtggctaccttcctgagggtggagcccaccaaaggactgttctactttgacaacagcttt
cgcccagtccctctggagcagacctatgtgggaattacagagaaaaaagccatcaagcgc
tttcagattatgaatgaaatcgtgtatgagaaaatcatggagcatgctgggaagaaccag
gtgctcgtgttcgtccactccagaaaggagacggggaagacggcgcgagccatcagagat
atgtgtctggagaaagacacgctgggcctcttcctgcgagagggctctgcttccacggag
gtcctgaggaccgaggcagagcaatgcaagaatttggaactgaaagacttgctgccctat
ggatttgccattcaccacgccggcatgaccagggtggatcggacactggtggaagatctg
tttgcagataagcacattcaggttctggtttccacggcaaccttagcttggggggttaac
ctccctgctcacacggtcatcatcaaagggacgcaggtgtacagccccgagaaaggccgc
tggactgagctgggtgccctggacatcttgcagatgttgggtcgtgctggaagacctcag
tacgacacgaagggcgaggggatcctcatcacgtcccacggcgagctgcagtactacctc
tcccttctcaaccagcagctccctatcgagagccagatggtggccaagctcccagatatg
ctgaatgcagaggttgtgctggggaacgtccagaatgcaaaggatgcagtgaactggctt
ggctacacttacctctacatacggatgctgagatctccaaatctctacggcatctcccac
gacgacatgaaaggagacccgttgctggaccagcgccgactggacttggtgcacacagca
gccctgatgctggacaaaaacaatttggtcaagtatgataagaagactgggaatttccag
gtgaccgagctgggccgcattgccagccactactacatcaccaacgagaccatacaaact
tacaaccagctgctcaagcccaccttgagtgagattgaactcttccgcgtgttctctctg
tcctccgagttcaagaacatcaccgtgagagaggaagagaaactggaacttcagaagctg
cttgagagggtcccgattccagtgaaagagagcattgaggagccaagcgctaaaatcaac
gtgctcctccaagcgtttatctctcagctgaaactggaaggctttgccctcatggcggac
atggtctacgtcactcagtctgctgggcggctcatgcgtgccatctttgagatagtcctt
aaccgtggttgggcgcagctcaccgacaagaccctcaacctttgcaagatgattgacaag
cgaatgtggcagtccatgtgccccctgcgacagttcaggaaattgcctgaagaggtggtg
aagaaaattgagaagaaaaacttcccttttgagcgactgtatgacctgaatcacaacgaa
ataggagagcttattcggatgcccaagatgggaaagacgatccacaagtatgtccacctt
ttccccaaactggagctgtctgtccacctgcagcccatcactaggtctactctgaaagtg
gagctaacaattactcctgacttccagtgggatgaaaaggtccacggttcctccgaggcc
ttctggattttggtggaagatgtggacagcgaagtgatcctccatcacgagtatttcctt
ctgaaggccaaatacgcccaggatgagcatctcatcaccttcttcgttccggtttttgag
cctcttcctccacagtacttcatccgggtggtctcagatcgctggctttcctgtgagacg
cagctgccagtgtccttccggcacttgatccttccagagaagtaccctcctccgacggaa
ctgctggacttacagcccctgcccgtctctgcattgcggaacagcgcctttgagagtctc
taccaagacaagttccccttcttcaatccaatccagacccaagtattcaacaccgtctac
aacagcgatgaaaacgtctttgtgggcgcgccaaccggcagtgggaagaccatctgtgca
gagtttgccatcctgaggatgctgttgcagaacgtggagggccgctgtgtctacatcact
cccatggaggcgcttgccgaacagatcttcctggattggtatgagaaattccaagaacgg
cttctcaaagtcgtcttgttgacgggggagaccagcactgacttgaagttgctgggcaag
ggcaacatcatcatcagcaccccggaaaagtgggacatcctgtcccggcgatggaagcag
cgcaaaaacgtgcagaatgtcaatctcttcattgtggacgaagtccacctcattggaggc
gagaacgggccagtcctggaggtgatctgttcccgaatgcgctacatctcctcccagatc
gagcggcccatccgcattgtggccctcagctcctccttgtccaatgccaaggacgtggcc
cattggctgggttgtagtgctacagccaccttcaacttccaccccaacgtgcgccctgtg
cctctggagctgcacatccaaggcttcaacatcagccacacacagacccgcctgctctcc
atggctaagccggtctaccatgcgattatgaaacactctccgaagaagccggtcattgtg
ttcgttccctcgcgcaagcagacccggctgacggccattgacatcctcaccacctgcgct
tcagatgtccagagacacaggtttctgcactgcactgagaaggacgtggctccatacctg
gacaaactgaacgacaataccttgaaagagacggtggtgaacggggtgggctacctgcac
gagggactcacctcaatggaacgaagagtggtggagcagctgtttagctcaggggccatc
caggtggtggtggcttcccggagcctctgttggggaatgaatttagcagcccacttggtg
atcatcatggacacacagtactacaatgggaagatccacgcgtatgtggactatcctatc
tatgatgttctacagatggtgggccgtgctaaccgcccattgcaggacgatgagggacgc
tgtgttattatgtgccaagggtccaagaaggatttcttcaaaaagttcctctacgagccc
cttcctgtggagtctcaccttgaccactgcatgcacgatcacttcaacgctgaaattgtc
accaagaccatcgagaataagcaggacgctgtggactacctcacctggaccttcttgtac
cgtaggatgacccagaaccccaactattacaacctgcaaggtgtgtctcaccggcatctc
tccgatcacctttccgagctagtggaacaaactctgagtgatctggaacagtccaagtgc
atcagtgttgaagacgagatggacgtggcgcctctgaaccttgggatgattgcagcttat
tattacatcaactacaccaccattgaactcttcagtatgtccctgaatgccaagacgaaa
gtgagaggactgatcgaaattatctccaatgctgcagaatatgagaatattcctattcgg
caccacgaggacaatctcttgcggcagctggcccagaaagtgccccacaagctgaataac
cccaagttcaacgacccccacgtcaagaccaacctccttttgcaagcacacttgtcacgg
atgcagctaagcgcagagctccagtcagacaccgaggagattctgagcaaggccatccgg
ctgatccaagcctgcgtcgacgtcctctccagcaacggctggctgagccccgccctggcg
gccatggagctggcccagatggtcacgcaggccatgtggtcgaaggactcctacctgaag
cagctgccacacttcacctccgaacacatcaagcgctgcacggagaagggagtggaaagc
gtgtttgacattatggagatggaagacgaggaccgcaacgccctgcttcagctctccgat
gcccagattgcagacgtggctcgcttctgcaaccgctaccccaacatcgaactctcctat
gaggtggtggaaaaggatggcatccgcagtggagggcctgtggttgtgctggtgcagttg
gagcgagaggaggaagttaccgggccggtgattgccccgttgttcccacagaaacgcgag
gaaggctggtgggtggtgatcggtgactccaaatccaacagcctcatttccatcaagcga
ctgacgctgcagcagaaggccaaggtgaaactggattttgtggccccggccactgggacg
cacaactacacactctacttcatgagcgatgcctacatgggctgtgaccaggaatataag
ttcagtgtggatgtaaaggaggcggagagtgacagcgactctgactga
DBGET
integrated database retrieval system
