Comamonas thiooxydans: CtCNB1_0358
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Entry
CtCNB1_0358 CDS
T01109
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ctt
Comamonas thiooxydans
Pathway
ctt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CtCNB1_0358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctt03021
]
CtCNB1_0358
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_0358
Enzymes [BR:
ctt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CtCNB1_0358
Transcription machinery [BR:
ctt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CtCNB1_0358
DNA repair and recombination proteins [BR:
ctt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CtCNB1_0358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ACY31104
UniProt:
A0A096DF70
LinkDB
All DBs
Position
383904..388016
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQADVAPKKRTIDGLQAAFNSA
FPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTAQSKV
VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVSILLKAIGMTPETILATFFVNDNFRLM
DSGAQMEFVADRLKGEVARFDITDKSGKVVVAKDKRITARHTRELEQSGTKFVSVPEDFL
LGRVLAKNIVDPDTGEIIAKANEELTEALLKKLRSAGVQDVQCIYTNELDQGAYISQTLR
TDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNADTYDLSRVGRMKFNAKIGRE
GATGPMVLSNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVVDGKVTMDIDYLSAIEEGKYVIAQANADLDAEGNLVGELVSAREAGESTLVSAERVQY
MDVSPAQIVSVAASLIPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAVDS
GTVVTAKRGGIVDYVDATRIVIRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVS
RGDKLAKGDVLADGASTDLGEIAIGQNMLIAFMPWNGYNYEDSVMINERIVADDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDVLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPQKLSKGAKIDKAYLDGVEKFHWFD
IRPAEDDVAAQLESIKNSIEQQRHTFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKITPVEDMPFLADGTTADIVLNPLGVPSRMNIGQVLEVHLGW
AGKGLGQRIGDMLQKEARAAEVRAFLEEIYNRSGRKEELSQLDDGEVMSMAKELTTGVPF
ATPVFDGASEAEIKDMLKLAYPDDIAAAKGLTETRTQAYLYDGRTGERFERPTTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT
VKSDDVVGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttataccgaacgcaagcgaatccgcaaaagcttcgggagccgcgatagc
gtgctcgaagtgccttatctgctgcagatgcaaaaagatgcctatacagcattcctgcag
gcagatgtagcccccaaaaaacgtaccattgatggcctgcaagcggccttcaattccgcc
ttccccatcgtctcccacaatggttttgtggagatgaagtttgtcgagtacaacctcgcc
aagcccgctttcgacgtgcgtgaatgccagacccgtggtctgaccttcgcctccgctgtc
cgcgccaaggtccagctgatcatctatgaccgcgagtcctccacggctcagtccaaggtg
gtcaaggaagtgaaggagcaagaggtctacatgggcgaagtgcccctgatgaccgacaag
ggttcgttcatcatcaacggtaccgagcgcgtgatcgtgtctcagcttcaccgttcgcct
ggcgtgttcttcgagcacgacaagggcaagacccatagctcgggcaagctgctgttctcg
gctcgcatcattccttaccgcggctcctggctggacttcgagttcgaccccaaggacctg
ctgtacttccgcgtcgaccgtcgccgcaagatgcctgtgtcgatcctgctgaaggccatc
ggcatgacgcccgagaccatcctggcaacgttcttcgtgaacgacaacttccgcctgatg
gacagcggtgcgcagatggaattcgtggccgatcgcctgaagggcgaagtcgcgcgtttc
gacatcaccgacaagtccggcaaggtcgtggtcgccaaggacaagcgcatcaccgctcgc
cacacccgcgagctggagcagtccggcaccaagttcgtcagcgtgcccgaagacttcctg
ctgggtcgtgtgctggccaagaacatcgttgatcccgataccggcgaaatcatcgccaag
gccaacgaagaactgaccgaagccctgctcaagaagctgcgcagcgccggcgtgcaggac
gttcagtgcatctacaccaacgaactggaccagggcgcctacatctcgcagaccctgcgc
accgatgaaaccgtggacgagttcgctgcccgcgttgccatctaccgcatgatgcgtcct
ggcgagcctcctaccgaggacgccgtgcaggccctgttccagcgcctgttctacaacgcc
gacacctatgatctgtcgcgcgtgggccgcatgaagttcaacgccaagatcggccgcgaa
ggcgcgaccggtcccatggtgctgtccaacgaagacatcctggccgtggtcaagatcctg
gtggacctgcgcaatggccgtggcgaagtcgacgatatcgaccatctgggcaaccgccgt
gtgcgttgcgtgggcgaactggccgagaaccagtaccgcaccggtctggcgcgtatcgaa
aaggctgtgaaggaacgtctgggtcaggccgagcaagagcctctgatgccccacgatctg
atcaactccaagcccatctctgcggccctgaaggagttcttcggtgcctcgcagctgtcg
cagttcatggaccagaccaaccctctggcagaaatcacgcacaagcgtcgtgtttccgcc
ctgggcccaggcggtctgacccgcgaacgtgccggctttgaagtgcgtgacgtgcacgtg
acccactacggtcgcgtctgccctatcgaaacgcctgaaggtcccaacatcggtctgatc
aactcgctggctctgtacgcccgcctgaacgagtacggtttcatcgaaaccccgtaccgt
cgcgtggtggacggcaaggtgacgatggacatcgactatctgtcggccatcgaagaaggc
aagtacgtgatcgcccaggccaacgccgatctggatgccgaaggcaatctggtgggcgag
ctggtgtcggcccgtgaagccggtgaatcgaccctggtgtcggccgagcgcgtgcaatac
atggacgtgtcgcctgcgcagatcgtgtccgtggccgcctcgctgattcccttcctggaa
cacgacgacgcaaaccgtgccttgatgggcgccaacatgtcgcgtcaggccgtgcctgtg
ctgcgtcctgaaaagcccatggtcggtaccggcatcgagcgcgttgctgccgtggactcc
ggcaccgtggtcactgccaagcgcggcggtatcgtggactatgtcgatgccacccgcatc
gtgatccgtgtgaacgacgacgaagccgtggccggtgaagtcggcgtggacatctacaac
ctgatcaagtatcagcgttccaaccagaacaccaacatccaccagcgccccatcgtcagc
cgtggcgacaagctggccaagggtgatgtgctggcggacggcgcttcgaccgacctgggc
gaaatcgccatcggccagaacatgctgatcgcgttcatgccctggaacggctacaactac
gaagactcggtgatgatcaacgagcgcatcgtggctgacgatcgctacacctcgatccac
atcgaagagctggtggtgatggctcgcgacaccaagctgggtgccgaagaaatcacacgc
gacatccccaacctgtccgagcagcaactgaaccgcctggacgagtccggcatcatctac
gtgggcgccgaagtgcaacccggcgatgtgctggtgggcaaggtcacacccaagggcgag
accacgctgacgcctgaagagaagctgctgcgcgccatcttcggcgagaaggcttccgac
gtgaaggacacttctctgcgtgtggatcagggctcgcaaggtaccgtgatcgacgtgcag
gtgttcacgcgtgaaggcatccagcgcgacaagcgtgcccagcagatcatcgacgatgaa
ctcaagcgcttccgcctggacctgaacgaccagctgcgcattgtggaagccgacgctttc
gaccgtatcgagaagctgctgaccggccgcgtggccaacggcggccctcagaagctgtcc
aagggcgccaagatcgacaaggcctatctggacggcgtggagaagttccactggttcgac
attcgccctgccgaagacgatgtggccgctcagctggagtccatcaagaactccatcgag
cagcagcgtcacaccttcgacctggcgttcgaagaaaagcgcaagaagctcacgcaaggc
gacgagctgcctgccggcgtgctcaagatggtcaaggtctacctggccgtcaagcgtcgt
ctgcagcccggcgacaagatggccggccgtcacggcaacaagggtgtggtctccaagatc
actcccgtggaagacatgcctttcctggccgacggcaccactgccgacatcgtgctgaac
ccgctgggcgtgccttcgcgtatgaacatcggtcaggtgctggaagtgcatttgggctgg
gccggcaagggcctgggccagcgcatcggcgacatgctgcaaaaggaagcccgcgctgct
gaagtgcgtgccttcctggaagagatctacaaccgcagcggccgcaaggaagagctgtct
cagctggacgacggcgaagtcatgtccatggccaaggagctgaccacgggcgtgccgttc
gcaacgccggtgttcgacggtgcttccgaagccgaaatcaaggacatgctgaagctggcc
taccctgacgacatcgctgcagccaagggtctgaccgagacacgcactcaggcttatctg
tatgacggccgcaccggcgagcgcttcgagcgtccgaccaccgtgggctatatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcatgcccgctccaccggtccttactcg
ctggtgacgcaacagcctctgggcggtaaggcccagttcggtggtcagcgtttcggtgaa
atggaagtgtgggcgctggaagcttacggcgccgcctatgtgctgcaggaaatgctgact
gtgaagtccgacgacgtggtcggtcgtaccaaggtgtacgagtccatcgtcaagggcgag
cactcgatcgaagcgggcatgcccgaatcgttcaacgtgctggtcaaggaaatccgctct
ctgggcttggacatcgagctcgaacgttcttaa
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integrated database retrieval system
