Cyprinodon tularosa (White Sands pupfish): 119774415
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Entry
119774415 CDS
T07496
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119774415 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119774415 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119774415 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctul00535
]
119774415 (col9a2)
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Others
119774415 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119774415
NCBI-ProteinID:
XP_038127853
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MATLSALLKTWIILQTLCLAFAQVRGPPGPQGLPGPPGTPGSDGIDGDKGPPGPTGPVGQ
KGEPGEPGPDGPPGKNGIDGLIGAKGDRGPVGNPGPKGQPGPSGEPGRPGVGLPGLAGAP
GPIGLPGQIGPPGPKGVLGPPGAPGLPGPPGKPGPPGKFIGLDEGSADLQCPLNCPAGPK
GPQGLQGVKGHKGRAGALGDPGSIGQLGPKGDIGISGEQGIPGPPGPIGLRGYPGMMGPK
GEAGPRGYKGIVGPVGIPGPPGEEGPQGALGDSGEKGDKGGRGIQGPQGAVGKKGENGLP
GIDGKDGTPGIPGIKGSPGQPGMPGNPGPQGTAGLPGTPGAKGEPGVKGETGPRGPVGMP
GTPGPLGEPGIPGEPGMAGVPGPKGDRGERGPVGPQGPVGKPGSKGERGPIGIPGPQGLT
GTKGDRGFQGKVGPKGDVGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDTGHNGPTGDP
GKPGDPGPPGLPGPRGLNGERGVPGMPGIEGPAGRDPSDQHIIEVVLKMLQERLQAVTVS
SKRAVLGGAGVMGPPGPPGPPGAPGPQGPHGLPGPRGIPGMIGGPGQIGNTGLKGKRGPK
GQRGDPGKPHPGQPGPPGIQGPPGVDGVARNGRHGERGPQGAAGEPGRPGKAGPPGLPGF
CEAAMCLAASAYTSPRLQEAGTIKGPNF
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctactctctctgccttgctgaagacctggataatcctgcaaaccctgtgcctggct
tttgcccaagtgaggggtccacctggacctcagggcctaccaggtcctccaggcactcca
ggctcagacggcattgatggagataaaggacctcctggccccactggtccagtaggacaa
aaaggagagccaggagagcccggccctgacggacctcccggaaagaacggcattgatggt
ttgattggggcaaaaggtgaccgcggaccagttggtaaccctggcccaaagggtcagcca
ggtccaagtggtgagcctggacgtccaggagttggtctaccaggtctggctggtgcacca
gggccaattggccttccaggtcaaattggaccacctggaccaaagggtgtgttgggacca
ccaggtgctcctggactccctggacctccaggcaagccaggtcccccagggaagtttatt
ggtcttgacgaaggcagtgcagacttgcagtgtcctctcaactgcccggcaggacctaaa
ggcccccagggactgcagggtgtgaaaggacacaaaggacgcgctggtgctcttggagac
cctggcagcatagggcaactgggacctaagggagatattggtatttctggggaacagggc
atcccaggacccccgggtccaatcggtttgaggggctatccaggaatgatgggtcctaaa
ggagaggcaggtcctcgtggatacaagggcattgtcggacctgtaggaattcctggacct
cctggggaggagggaccccagggggcacttggagactccggagaaaaaggagacaaaggc
gggcgaggaatccagggtccacagggggcagttggcaaaaagggggagaatggtcttcca
ggtattgatggaaaagatggaacacctggcattcctggaatcaagggttctcctggccaa
cctggaatgcctggcaaccctggtcctcaggggacagcaggcttacctggtacaccaggg
gcaaagggagaacctggagtaaagggggaaactggaccgagaggccctgttggcatgcct
ggtacacctggtcctttgggtgaaccaggtattcctggagagccaggtatggcaggagtc
cctggacctaagggtgacagaggagagcggggaccagtaggaccacagggaccagttggc
aagcctggaagcaaaggagaaagagggccaattggtatccctggtccacagggacttact
ggaactaagggtgatcgggggtttcaaggaaaagttggtccaaagggagatgtgggcgac
ccaggcgttgagggattggctggtgagaagggtgaaaagggtttgtctggtgagcctggg
cccaaaggacagcaaggaattaggggagacactggacacaatggacccactggagaccct
ggtaaaccaggggaccccggaccccctggactgccaggtccaaggggacttaatggagaa
agaggagtacccggcatgccaggaattgaaggaccagctggccgtgacccatctgaccaa
catattattgaagtggtgctgaagatgttgcaggagaggctgcaagcagtaacagtaagt
tccaagagggctgtgcttggtggtgcgggtgtaatgggtcctcctgggccccctgggcca
ccaggagcacctggtcctcaggggccacatggcctacctggcccccgtggtatccctggc
atgattggaggacctgggcagattggaaacacgggtctaaaaggaaagagagggccaaaa
ggccagagaggagatccaggtaaacctcacccaggtcaaccaggacctcctgggatacaa
ggtcctcctggtgttgatggtgttgctcgaaatggtaggcatggtgaaagaggacctcag
ggagcagcaggcgagccaggtcgtcccggtaaagcagggcccccgggtctccctgggttc
tgcgaagcggcaatgtgtctggctgcatcagcatacacctcaccaagattacaagaggca
gggacgatcaaaggacccaatttttag
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