Cyprinodon tularosa (White Sands pupfish): 119776559
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Entry
119776559 CDS
T07496
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119776559 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119776559 (nup54)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119776559 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
119776559
NCBI-ProteinID:
XP_038130954
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MAFSFGGAATNTAAGTSGFSFGQFGAKTTASTTFGFNPTATTTTASSGFGTLTAPAFGTA
TTTAASAPGFGFSSTNTGFGGLGAGSTTAGGFSFGGFGLNANPAAISLSVGCFGTATTTG
SILNFGNSLASTGAFGGFGTTTTTATAPGSTFNFASSNTTGGLFGNTQNKAFGFPSGLGT
GTTTGATGFGTGLGTTGLGFGGFNIQSTAQPQGGLFGQPAQQLGQAQPTQLYQQVTALSA
PTLLGDERDSILAKWNQLQAYWGTGKGYYANNNPSVEFTQENPFCRFKAVGYSCVPVSKD
EDGLVVLILNKKEPDVRAQQQQLVESLHKVLGSNQTLTVNVEGVKALPNDQTEVIIYLVE
RSPNGTSKRIPASTLFGFLEQANIKAQLGQIGVVMSVTRTELTPAQLKQLLQNAPAGVDP
IIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISNDISELQKNQA
TTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAPTQ
FKGRLNELMSQIRMQNHFGAVRSEERYNVDEDLLREIKQHLKQQQDGLSHLISVIKDDME
DIKLIEHGLNDGGHMRGGILS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggtgctgcgaccaacacagcggcaggcacctccgggttttca
tttggtcagtttggtgccaaaacgaccgcttcaacgacgtttggttttaacccgacagcc
accacgaccaccgcctcttcagggtttggcactctgacagctcctgcttttggcacagct
acaaccacggctgcatcggccccagggtttggttttagctccaccaacactggatttggg
gggcttggagctggaagcactacagctggtgggtttagttttggggggtttggtttaaat
gcaaacccagcagcaatcagcctcagtgtaggttgctttggtacggcaaccacaactggc
tctattttaaattttggtaatagcctggctagtacaggggcatttggaggatttgggacc
actacaacgactgctactgcaccaggatccactttcaactttgcttcctccaacacaaca
ggaggtctgtttggaaacacacagaacaaagcttttgggtttccatctggacttggaact
ggtaccaccactggagcaacaggctttggaactggattaggaacaactggcctcgggttt
ggaggttttaatatccagtcgactgcacagccacaaggaggcttgtttggccagccagcc
cagcagctgggtcaagcacagcccacccagctttaccagcaggtcaccgctctgtcggcc
cccaccctgttaggagatgaacgggactccatactcgcaaagtggaaccagctgcaggcc
tactggggaacagggaagggctactatgctaataacaacccgtcggtggagttcactcag
gagaacccgttctgcagattcaaggcagttggctatagctgcgttccagtaagcaaggat
gaagatgggttagtcgtgttgattctgaataaaaaggaacctgatgtacgtgctcagcag
cagcagctggtcgagtcgctgcacaaggttctaggaagcaaccaaactctcaccgtcaac
gtggagggtgttaaagctctgcccaacgatcagacagaggttatcatttatctagtggaa
cgttcccccaacggtacctccaagaggatcccagcttccaccctctttgggtttctggag
caggccaacattaaggctcagctcggccagattggagtggtcatgtcagtcacgcgaaca
gagctgaccccagcacagctgaagcagctgctgcaaaacgctcctgcaggagtggatccc
atcatttgggaacaagcaaaggtggacaaccctgacccagagaagttaattcctgtgccc
atggtcggttttaaggagctgctccgcagactacagatccaggagcagatgaccaaacaa
caccaaaccagagtggatataatctccaatgacatcagtgagctgcagaaaaaccaggca
acaactgtggcaaagattgctcagtacaaaaggaagctgatggatctctctcacagggtg
ctgcaggtcctgataaagcaggagattcagagaaaaagcggctacgctatccaagtggat
gaggagcatctcagggtgcagctggacaccattcaatcagaactcaatgcacccacacag
ttcaagggtcgattgaatgaactgatgtcccaaattcgaatgcagaaccactttggggcc
gtgagatcagaagagcgctacaatgtggatgaagacctcctcagagaaatcaaacaacac
ttaaagcagcagcaagacggtctaagtcacctgatcagcgtcatcaaagatgatatggaa
gacatcaaactcatagaacatggactaaacgacggcggacacatgagagggggcatctta
agctga
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