Cyprinodon tularosa (White Sands pupfish): 119781328
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Entry
119781328 CDS
T07496
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119781328
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119781328
09142 Cell motility
04820 Cytoskeleton in muscle cells
119781328
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctul00535
]
119781328
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Others
119781328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
119781328
NCBI-ProteinID:
XP_038137678
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MAFRCSGLRREKQCHPSASARSLLCVALLSHLFAAALGQLDLSRLDGDTVCPPIRNGQDD
LPGFDLITQFQLDVVPLKGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
TTFRMIKNTVGKVWNVWQIVDEDGYKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGVERDQVTLYVDCQPVDQKPIKGKGPINTQGDTLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCNELPATEMFANAEPDKSLQGPPGPPGPEGPRGVPGESGRDGR
DGFPGTPGIPGAPGSKGEKGEIGLPGQRGLPGLPGSSGPIGPMGPRGPVGERGLPGFPGP
PGPPGPASEGPAGPPGKPGTPGDEGNIGPEGPPGPRGGVGVPGPPGPPGPPGPVGPPGAN
TEGSGESCPAACPAGPQGLHGLPGMKGHKGLPGEPGKDGEPGEKGEVGETGPQGPPGRMG
DDGQRGPIGFPGTPGEKGDRGAPGYNGVPGPTGPPGAPGVEGARGREGLPGEKGDDGAMG
PQGKPGVKGEKGEVGEPGKDGLDGLPGSDGIKGEPGAAGAVGVRGIVGIPGLPGKQGVAG
PPGEKGETGSEGPMGPVGLPGKTGQPGNDGEDGKPGEKGSTGATGKQGPMGPVGPKGIQG
DKGDKGATGPKGLKGHTGHKGDQGPTGPVGPKGSQGDPGLTGDPGVKGDQGPPGVSGIKG
ERGEKGQRGSTGAEGRPGQPGHAGATGPMGARGLEGDPGIPGPPGPRGLPGPKVNDEKLR
EMCSAVVEEQLEEFMKEFLKRPAAIGAPGTPGPAGPPGPPGPAGETGAVGIPGPMGPKGH
PGFYGLPGAPGQKGEAGQKGDKGDKGEDGVGTKGSPGAPGVPGAPGLPGVGRDGKNGERG
ETGSPGIPGPAGQRGPSGPPGLCDPSTCINRLPHLYMVSGKKSSSYKNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggctttccgctgctctggtctgaggagagagaaacaatgccatccatcagcgtcggca
cgctctctcctatgcgtggctcttctttcccatctctttgcagcagctctcggacaatta
gacctgagtcgactcgacggggacaccgtctgcccaccaataagaaacggacaagatgac
cttccaggtttcgatctgatcacccagttccagctggacgtggttcccctgaaaggagtg
aggaaggtggatggctccacgcccctccaggtggcctaccgtctcgacagggaggccaac
tttcaaattccaaccatgcttaactttcctcggggcttcccagatgagtactccttcatg
acaacctttcgtatgatcaaaaacacggtgggcaaggtttggaacgtgtggcaaatagtg
gatgaagacggctacaagcaggctggactcaggctgaatggcgaccagcaggctctggag
tatttcctaatgggtgcagatggaaacctccagaccgtcaccttccctggactatctgtg
ctcttcaacaccaagtggcacaaggtgatgatcggcgtggagcgtgaccaggtcactttg
tacgtggactgccagcctgtagatcagaagccgattaaggggaaagggccaatcaacaca
caaggagacaccctcatcggcaggctggatgccgatcccgatgcctctgtggtgtttgag
ctccagtggatgttaattcactgcgatccaaagagagcccagagagagagctgcaatgag
cttcctgccaccgagatgtttgccaatgctgagcctgacaaatctcttcaaggtccccca
ggtccccctggccctgagggccctcgaggcgtaccaggagaaagtggcagagatggaaga
gatggttttccaggaactccagggattccaggtgctcctggcagcaaaggggagaagggg
gagattggtcttcctggacagagaggcctccctggtcttccaggatcttctggtcccatt
ggtcctatgggtcccagaggacctgtgggtgaaagaggtctgcctggctttcctggaccc
ccaggcccccctggtccagcaagtgaaggacctgctggtcctccagggaagccaggaacg
ccaggggacgaaggaaacatcggacctgagggtccacctggacctagagggggggttggt
gttccagggcctcctggcccaccaggtccaccaggacctgtgggaccgcctggtgccaac
actgaaggaagtggggaatcttgtcctgccgcctgtcctgctggacctcagggactgcat
gggctgccagggatgaagggtcacaaaggattgcctggagagcctggaaaagatggagag
cctggagaaaagggggaagttggcgagacaggtcctcagggtccaccaggtcgcatgggg
gacgatgggcaaagaggaccaatcggatttccagggaccccaggagagaaaggagacaga
ggcgctcctggttacaacggcgtcccaggtccaactggtccacctggagctcctggtgtg
gagggagccagaggacgcgaggggttgccaggggagaagggcgatgatggagctatggga
ccacaaggaaagccgggtgttaaaggagaaaaaggagaagtcggtgagcctggcaaggat
ggactggatgggcttcctggatctgatggtatcaagggggagcctggtgcagcaggcgct
gttggagttagagggatagttggtattccaggtctgccaggaaagcagggagtagctggt
cctcctggggaaaagggtgagactggttcagaaggaccaatgggaccggttgggcttcct
ggaaaaactgggcagcctggaaatgatggggaggatggaaaaccgggagaaaaaggatcc
actggtgcaacaggaaaacaaggaccaatggggcctgttggtccaaagggaatccagggt
gacaaaggagataaaggagctactgggcccaaaggattgaaaggtcatacaggccataaa
ggcgatcagggaccaactggccctgtaggaccaaaaggaagtcagggagatccaggcctg
acaggagaccctggtgtcaaaggagatcagggccctcctggtgtgtctggcatcaaagga
gagcgtggagaaaaaggtcaaagaggatctacaggagctgaagggagaccaggtcagcca
ggacacgcaggagcaacgggtcccatgggagcacgagggttggagggagatccaggcatc
cctggaccaccgggtcctagaggtctacctggcccaaaagtgaatgatgaaaagcttcga
gaaatgtgctccgcggttgttgaagaacaattggaggaatttatgaaagaattcttgaag
agaccagcagccataggtgctcctggtacacccggaccagcaggacctccaggacctcct
ggaccagctggagaaacaggagcagtgggcattccaggtccaatgggtcccaaaggccac
ccaggcttttatgggcttccaggtgcacctggacaaaaaggtgaagccgggcaaaaggga
gacaaaggagacaagggagaggatggtgtagggaccaaaggaagtccaggggcaccaggt
gtaccaggtgctccaggtcttcctggtgtcggcagagatggcaaaaatggagagcgcggt
gaaacaggaagtccaggcattccaggacctgctggtcaaagaggaccctctggaccacct
ggtctctgtgacccatctacttgtataaacagacttcctcacctctatatggtcagtgga
aagaaatcctcctcgtacaaaaacccatga
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