Cyprinodon tularosa (White Sands pupfish): 119783454
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Entry
119783454 CDS
T07496
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ctul04515
]
119783454
Cell adhesion molecules [BR:
ctul04515
]
Cadherins
Cadherin related
119783454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_3
Cadherin_2
RET_CLD1
Cadherin_4
TMEM154
CADH_Y-type_LIR
RIFIN
Motif
Other DBs
NCBI-GeneID:
119783454
NCBI-ProteinID:
XP_038140904
LinkDB
All DBs
Position
Unknown
AA seq
3296 aa
AA seq
DB search
MPITSKGARRRAWIGRPSLLSNTCQQKLLFYVFTVLVQSTFVLGVLELQLDEGQPAGTIV
GDISAGLPPGETATLYFISDHEGTGVGSDLNIDETTGIITTARRLDREERDHYSFIAVTM
TGTTIQVSITVNDINDHAPVFPKAKAVLKIPEHTAVGTRFSLDPATDADKDQLTTQGYTI
REGNVGQTFKLETRKGANKLLYLDLVVNGLLDREKRSSYTLVIEAFDGGSPRRIGSMTLE
VTVTDINDHAPVFNQSRYHAIISESLPQGSSILQVFAIDEDEGDNGLVLYEINRRQSDSE
RYFVIDLKSGVITLNRPLDFEVKRVHELVVQAKDNASQPEVTNTFVTIHVRDFNDNQPTM
TIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSIIY
LIYVDQVLDREERDFYHLRVMATDSGTPPLRAESSFTIQVTDVNDNPPQFDQQTYRQTIP
EVVYPGTFVLQVTARDKDQGQNGDVRYSLLKAENSRSDWFSIDPVTGIITTATALDFESE
PAPSVTVVAMDGGRPPLSATVKVDIVLQDVNDNAPVFAKSFYNASIKENTPAGTCFLEVS
ATDGDRGSFGTITYTLGSSSGGTVPFTINKETGQLCTSATLDRDEGLEKFELAVTATDGG
GLSSVTHVRVTVVDINDNRPTFYPVLYTVSLSTHSAPGTSVLKVTANDPDAGENGRVTYR
TAPGGGSTFFTLNKDTGVISLSRSLHGKANTIISMEISAEDGSGLKAPVNARVNVSVVGG
SVASPIFEQAQYFFTVSEDVLRGTAVGVVRAATKTGVSKGILYSISSGDPDGYFTVDSTS
GTIRTALPLDHETCSSLNLDIQARFGSPPAYATSRVRITISDVNDNAPAFLPSSSESLLL
PEITKMGSVIYRIQATDKDSGHNGHLSFDLISAGAAGSSGQRTFGVDRGSGEVRLIGSLS
YESVPCYDLQVVAKDGGAPQLSSTFTLVVHIQAQDAQGPTFDTLTYRVELRENTPLNTRF
LQVRALNRESSGNTGSTPSSSSYISYRLRPDGDAAGFGIMPDTGWLFVRSSLDREVKDMY
LLTVLATSGPGGAGRTGSATVRVSVTDENDNSPRLSQERVFLAVRENLMAGSGFGRVSAT
DRDAGLNARLTYKLLHSDRHFQINSQTGEISTRLALDREQQSSYQLIVVVQDGGTPPRST
TGTAHITVLDENDNAPNFTHARPERELLLQVPEGLPSGTVVGTLSAKDADEGENGTLHYS
LSGPRAERFSLNPTSGELRTASPLRWAERAEYRYTVTATDHGTPGLSSTCQIRIQVLSNA
RSSPTPNVKSMTLNTVEGTAPGSIIGTLRPPGHQDSAVQDGQVTYLVVGGTDRDGTFMVD
RLEGHVYLVRELDYEKGSRYTLHVEVTDFSQAFPSSHLVKLDINVKDSNDHAPEFSEDPV
TIVISENTEPGASIHTFQAVDRDGSGPNSELRYSIEHCWPDTPDLLVLDPLSGVLTLGQK
LDRESTASLYLVVRATDQAVDPSQKGSVTARLYVTDENDNAPTFSSPSAVSVMEDQPVGF
VILYVVAQDKDEGENGRVSYRIQAGNNAGRFTLNPNTGSLSILKALDREEQEAFNLTIIA
EDHGVPPLSTSQLLCVQVIDVNDESPVFQQPEFNAQVMENQGPGTTVFTVTATDRDQGSN
GQITYGGVTEEGFVINPSTGVITTTKELDTEVQDHYTLTVYARDGGLPPNFAKAVVRVEI
QDMNDNGPIFAKSSYELEVPENQGPVELCFIKATDPDSGPGGELEYRITEGDPDGALQLH
PNTGALSTSRGLDRETKANYNLKVVATDHGSPPLSATVTVNLKVLDVNDNSPVFKRNSYN
VEVSEDAAEGFQVLQVSATDADDDLNGKVLYFLSHEAHGAFAVDEKRGVITTSAPLDREK
TASYSFQVFAVDLSPAAPKNSSAQVTVTILDVNDNAPFFIQDPLIIEVSSRRSQRVLATM
KAEDKDFGANGSVFYRFATSVRGFSINSLTGEIQATEPLRDLTQAQRTLIVEAMDQGSPA
QSAQGVVVIYVKEVEYNGIRFSRNARDVSLQENAEKGTAVAQAQAQYPDGTRKGISYSLF
SGNRKRAFSISSSTGEIWVQSSQGLDFEDSPRLRLVVKAETVSSTSFMAINLVLQDVNDN
QPRFQLQNYVAYMKEAQGYEMPIIQVLAEDVDQGQNGQVTYSIQSSSMSGLFKIDPVTGS
ITTAAIMDREIFTTTKLVVTATDRGSPRLAGLATLTVIIVDQNDNSPTIPLPQEVRIPEN
TLIGTEITLVTGNDVDSSPALSYSLQLDPTSLGKFGIHRYSGGVSLTAPLDFEEKTWYTL
TVRATDSQHQTEANITILVEDINDNAPVFTHDLYQITLPEHTPPGSAVITVTATDRDSGD
NGRITYRLMSSTQEGFYINPGNGTLFINHQAEFDPERPAVNIVIEARDGGSPSLSALTTV
QVQISDVNDNAPVFHQSEYRATVAEDTVPGLTILTFEAFDSDLSRENCGFDFAIASGNEG
NAFQIESSVRFLEGRGFQTVGTLLLAERLDFETKSLYNLTVVVSDRGVPQRSSSVAAVIT
IADVNDNPPVFTRAEYTVSLSEGATSGTEIIRLTATDPDSTPNAEVQYSISSGNEVNLFS
IDQWTGALKLEQTLDREQQSTHVFIIQATDGHGHFALAPVIVEVKDVNDNHPFFPVEFLT
ASIRENQPVNSAVTVLHAIDHDTGVFGQLKYFMVERSGKGRDNFVVDQNSGEVRSKNIFD
YEKVNSFSFQALAVDSGNHSATVTVQVFVTGEDEYDPLFTSTQFSFEVPEGAKKGQSIGQ
VQAQDEDGGVDGVVLYSLTSNSPYFDINKTTGVVFLKTDSSSSSSGSGQAKQETRVMTLD
VKAHSPLDTSRSTTAEITIDVTNTNFGLAADVNILLIIIIAVSLGIIILLVVLAVVIFFV
KSHRRKKDQDAANRTLASGTALQKLDECTPGPGGDSIYHQTLPGYAADQGGAGGGPYPRG
GSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISARGPDSGIQQDADQLSD
ISCEPAALEGSSWFKGKKLGGSLSGTLLSGQLPVYRDEGGGYLGVGRGLNISLPKDYAFP
EDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETAQQSQN
PRQPFQPKPKIDPKPRIDPPPLITSVAHPGAMTVPPKVPVIGRTFPHLSSLRRSPISHEG
SISSAAMSPSFSPSLSPLAARSPAVSPFGVNQGPSASMISTREPSLEQSPDHEMRI
NT seq
9891 nt
NT seq
+upstream
nt +downstream
nt
atgcctataacaagtaaaggagctagacgaagggcttggattggcagaccctctctactt
tcaaacacctgccaacagaaactcctcttttatgttttcactgtcttagttcagtcaacc
tttgttttgggagttctagaactccagctggatgaaggccagccagcagggactattgtt
ggtgacatcagtgcaggacttccacctggtgaaacagctaccctttacttcatttctgac
cacgagggcacaggcgttggaagtgaccttaacattgatgagaccactggcatcattacc
acagcacgccgcctggaccgggaggaaagggaccactatagcttcattgcggtgacaatg
actggcaccactattcaggtgtcgatcaccgttaatgacataaatgatcatgcacctgtg
tttcccaaagcaaaagctgttctgaagatcccagagcacaccgctgtgggaacaaggttt
tccctggatcctgccactgatgctgacaaggaccagctgactacccaaggctataccatt
cgagagggcaacgttggacagacatttaagcttgagacaaggaagggtgctaacaagtta
ctttatttagacttggtggtcaacggactactggacagagagaagcgctcgtcatacacg
ctggtgatagaggcatttgatggaggctcaccaagaaggataggatctatgactctagaa
gtgacagtaacagacatcaatgaccatgcaccagtctttaatcagagcagataccatgct
atcatctccgaaagcctccctcaaggaagtagcattttacaggtgtttgcaattgatgaa
gatgaaggcgacaatggtctggtcctttatgaaatcaaccgccgtcagagtgattctgag
cgttactttgtcattgatctaaagtcaggtgtcatcactctcaatagacctctggacttt
gaggtaaagagagtccatgaactggtggtccaggccaaagataatgctagccaacctgag
gtcactaatacatttgtgacaattcatgtccgtgacttcaatgacaaccagccaaccatg
accatcatcttcctcagtgaggacggctcaccgagaatctcggaaggggcccaaccaggc
cagtatgttgctcggatatctgttactgacccagactacggggagtatgctaatgtgaac
gtatccctagaggggggtgatgggaaatttgcgctaacaaccaaagacagcataatttac
ctgatatacgtggaccaggttttggacagagaagagcgggatttctaccatctcagggtg
atggccacagactcaggcacacctcccctcagagctgaatcctctttcacgatccaggtg
acagatgtcaatgacaaccctccacaatttgaccagcagacctacagacaaaccattcct
gaggtcgtctacccaggaacgtttgttcttcaggttacagccagggacaaggaccaaggc
caaaatggggatgtgcggtacagcctgctaaaggctgaaaattctcgctctgattggttt
tcaattgatccagttacggggataatcaccactgcaacagctcttgactttgaatcagag
ccagcgcccagtgtaactgttgttgcaatggacggtggtcggccgcctctgtctgccaca
gtgaaggtagatattgtgcttcaggatgtcaatgataatgcgccagtgtttgccaagagt
ttctacaatgcctccatcaaggagaataccccagctggcacctgcttcttagaggtttct
gccacagatggagacagaggttcttttgggaccattacctacaccctgggctcaagctct
ggaggcactgttccctttaccattaacaaggagacgggtcagctatgtaccagtgcaact
ctcgacagggatgagggattagagaagtttgaactggctgtaacagcaacagatggaggt
ggtttaagttctgtaactcatgtgagagtcacggtggtggacattaatgacaaccggccc
accttctatccagtcctgtacacggtcagtctcagcactcacagcgcccctggtacctct
gtgctgaaggtaacagccaacgaccctgatgctggagaaaacggcagagtgacctaccgc
acagcacctggagggggctccactttcttcaccctcaacaaagacacaggtgtgatttct
ttgtcccgttcccttcatggcaaagccaacaccattatttccatggagatttcagctgag
gatggtagcggcctgaaggcaccagtaaatgccagagtgaacgtgagcgtggttggaggc
tctgttgcgtcccctatttttgaacaagcacagtatttcttcactgtgtcagaggatgtt
ctcagggggacagcggtgggagtggtccgtgctgcaacaaaaacaggtgtttctaaaggc
atcttgtactccatttcttccggagaccctgatggctacttcacagtggacagcacctct
ggcaccattcgaacagctctgcctcttgaccatgaaacctgctccagtctgaacctagat
atccaggcacgctttggttctcccccagcctatgcaaccagccgtgttcgtataactatt
tcagatgtcaatgacaacgcccccgcgttccttccctcttcatctgagtccctcctgttg
cctgaaataaccaaaatgggctcagtaatataccgaatccaggccacagacaaagactct
ggtcacaatggacatctgagctttgacctcatctctgcgggggctgcgggcagcagcggc
caaaggacatttggcgtagaccgtggtagtggggaggtacgactgattggaagtctctct
tatgagtctgttccatgctatgatcttcaggtggtggcgaaggatggtggagcgccgcag
cttagttccacttttactcttgtggtccatatccaagcacaggatgcacaaggccccacc
tttgacaccctcacctacagagtggagctccgggagaacacgcctctcaacacacgtttc
ctgcaggttcgagcactcaacagagagtcatcagggaatactggaagcaccccgtcttcg
tcctcctatatttcctaccgtctgaggcctgatggtgatgcagctggatttggcatcatg
ccagacactgggtggctgtttgttcgtagttctctggacagagaggtcaaagatatgtac
ctgttgacagtcttggctacatcaggcccaggcggagcgggcaggaccggcagtgccact
gtcagggtgtctgtaacggatgagaatgataattccccgaggctgagccaggagagggtg
ttccttgctgtcagagagaacttaatggcagggtccggctttgggagagtttctgcaaca
gacagagatgcaggattaaatgctcgactcacatacaaacttctccactcagacagacac
tttcagatcaactcacaaacaggggagatcagcacccgcctcgctctggacagagagcag
cagtcaagctatcagcttatcgtggtggtgcaggatgggggcactcctccgcgcagcacc
acaggcactgctcacatcaccgtactggatgaaaatgacaacgcccccaatttcactcat
gccagacctgaaagagagctgctgcttcaggtgccagagggtctaccatcagggactgtg
gtaggaactctgtcagctaaagatgctgatgagggggagaacggtacactgcactactct
ttatcaggtcccagagcagagcgtttctccttgaaccccaccagtggcgagctgagaact
gcttcccctctacgttgggctgagcgagctgagtacagatatacagtgaccgccactgac
cacggcactccaggcctcagctcaacctgccaaatccgaatacaagttctcagcaacgcc
aggtcatccccaacacccaatgtcaaatctatgaccctgaacactgttgaaggcactgct
cccggctccattatcggcacgttacgcccacctggccatcaggattctgctgtgcaggat
ggccaggtgacctacctggtagtgggagggaccgaccgggacgggactttcatggtggac
cgtctggagggccatgtgtacctggtgcgcgagctggactatgagaagggctccagatac
actctgcacgtcgaggtgacagatttctctcaagcatttccaagcagccacctggtcaag
ctggacatcaatgtgaaggatagcaatgaccatgcccctgagttttcagaggacccagtg
actattgtgatctcagaaaacacagagccgggggcttcaatacacactttccaggctgtg
gatagggatggaagtggaccaaacagtgagctacgttactctattgagcattgctggcct
gacacccctgacctcctggtccttgacccactaagcggggtccttactttggggcagaag
ttagaccgtgagtctacggcctccctctaccttgtggtgcgagccactgaccaagcagta
gatccctctcagaagggctcagtcacagctcggctgtatgtgacggatgaaaacgacaac
gctccaacatttagctctccgtctgccgtcagtgtcatggaggatcagcctgtagggttt
gtgattttgtacgtggtagcacaggataaagatgaaggagagaatggcagagtatcctac
agaatccaagcaggcaacaatgctggtcgcttcactcttaatcctaatacaggctctctc
tccatccttaaagccttggaccgggaagaacaggaggcctttaacctaacaatcatagca
gaggatcatggagtaccaccgctctccacctcccagctgttgtgtgtgcaggtgatagac
gtcaacgacgaatctccagtgtttcagcagccagagttcaacgcccaagtgatggaaaat
caaggaccaggaaccacagtgttcactgtaacagccacagatcgtgatcaaggttctaat
ggtcaaataacatatggaggtgtgacagaggagggttttgtgatcaatccttcaactgga
gtcatcaccaccacaaaagaacttgacacagaagttcaggatcattacacacttactgtg
tatgccagagatggagggctgcctccgaattttgccaaggccgtggtccgtgtggagatc
caagacatgaacgataacggccccatctttgcgaagtcatcttatgaactcgaagtgcca
gaaaaccagggccctgtggaactttgctttatcaaggccacagatccagactcgggtccc
ggtggagaactggagtacagaatcactgagggggaccctgatggagctttgcaactccac
cccaacacaggggccctctccacgtcacgtggacttgacagagagacaaaagcaaactat
aacttgaaggtggtggccacagatcacgggagcccccctctcagtgctactgtcacggtt
aaccttaaagtgttagacgtcaatgacaacagccctgtttttaaaagaaacagctacaac
gtggaagtctctgaggatgctgctgagggttttcaagttcttcaggtgtcagcaacagat
gctgatgatgaccttaatgggaaggtcctgtattttctcagccatgaagcacatggagcc
ttcgctgttgatgagaagagaggtgttatcaccacctcagcgcctcttgaccgggaaaaa
actgcatcttacagcttccaggtgtttgctgttgacctttcccctgctgctcccaaaaat
tcttctgctcaggtgaccgtaacaatacttgacgtcaacgataacgcccccttcttcata
caagaccctttgatcatcgaagtgtccagcaggcgttcacagcgcgttttagccaccatg
aaggctgaggataaagattttggtgccaacggttccgtgttttatcgctttgccacatct
gtgaggggcttcagcatcaactcgctcacaggggagatccaggccaccgagccgctaagg
gacctgacccaggctcagaggaccttgatagtggaagccatggatcaaggcagcccagcc
cagtctgcacagggggtagtggtgatttatgtaaaggaagtagaatacaacggcattcga
ttctcaaggaatgctcgagatgtcagcttacaggaaaatgctgaaaaaggcacagcagtg
gctcaggctcaggcccagtatccagatggcacacggaaggggatcagctatagtctcttt
agtggaaacagaaagcgggctttcagtatcagctcctcaacaggtgaaatctgggtgcag
agctcccaaggactagactttgaggacagtccccgactccgtcttgtagtgaaagctgaa
acggtgtcatccacttcgttcatggccattaatttggtccttcaggatgtcaatgacaac
cagcctcgcttccagctgcagaactatgttgcttacatgaaagaagcacaaggatatgaa
atgccaattatacaggtgctggctgaagacgtggaccaaggccaaaatggtcaggtgaca
tactccatccagtcctcaagcatgagtggcctgtttaagattgatccagtgacaggaagc
atcaccacagctgccatcatggacagggagatctttacaacaaccaagctagtagttact
gcgacagatagaggaagtccacgactggccggtttagccacgctaacagtgataattgtt
gaccaaaatgacaacagtcccactattccgttaccccaggaggttcgcatcccagaaaat
acgctaatcggcacggagatcactcttgtgacaggcaacgatgtggactccagtcctgcg
ctctcttactccttgcagcttgaccctacatccttaggcaaatttgggatccatcgttac
agtggaggcgtgtcactgacggcccctctggactttgaagagaagacatggtacaccctg
acagtcagagccacagacagccagcaccaaactgaggccaacattacaatattggtggaa
gatattaacgacaatgcacctgtattcacccatgatctctatcagattaccctacctgag
cacacgccacctggaagtgcagttatcacagtaacagcaactgacagggactctggagat
aatgggaggatcacctacagattgatgtcatccactcaggagggtttctatataaacccc
ggcaacggaaccttgtttatcaatcaccaagccgagtttgaccctgaacgtccagccgtt
aacattgtcattgaagctcgagacggaggctcgccttcactctccgctctcactacagtc
caggttcagatttctgacgtcaacgacaacgctccagtgtttcaccagtcagagtatagg
gcaacagtggctgaagacaccgttccagggttaaccattcttacctttgaggcctttgac
agtgacctgtcacgagaaaactgtggctttgactttgccattgcgagtggaaatgaagga
aatgcgtttcagattgagagcagtgtacgtttcctagaaggacggggctttcaaacagta
ggaactctgttactggctgagaggcttgactttgaaaccaagtcgctttataacctcact
gtggtggtgtcagaccgaggtgtcccacaaaggagctccagtgtcgctgcagtcataaca
attgccgatgttaacgataaccccccagtgttcactagagcagaatatactgtgtctctc
agtgagggagccacctcggggactgagatcataagactgactgcaacagacccagactca
actccaaatgctgaagtccaatattccatcagctctggaaatgaggtgaacttattttcc
attgatcaatggacgggagctctaaagcttgagcaaacacttgaccgggagcaacagtca
actcatgtctttatcattcaagccacagatggtcatggtcattttgctctagctccagtc
attgttgaagtaaaggatgtaaacgacaaccatccattctttccagtggagttcctgaca
gccagtatacgggaaaaccaaccggtaaactcagctgtgactgtcctccatgccatagac
catgacactggtgtttttggccaactgaagtattttatggtcgaaaggtctggaaaagga
agagacaactttgttgtcgaccagaattcaggagaagtcagaagtaaaaatatatttgac
tatgagaaagtaaactcgtttagtttccaagccttagctgtggattcaggcaaccattca
gccactgtaaccgtacaggtgtttgttacaggtgaggacgagtatgacccactatttact
tccacacagttttcatttgaagtgccagagggagcaaagaaaggtcaaagcattggtcag
gttcaagcacaggatgaagatggaggagtggatggtgtggttctctattccctgacttcc
aactctccatatttcgatataaataaaactacaggggtggtttttctcaagacagacagt
tccagcagcagcagtggatcaggccaggctaaacaggaaaccagggtaatgaccctggat
gtgaaggctcacagtccacttgatacatcacgctctactacagccgagatcaccattgat
gtcactaacaccaacttcggcttggctgctgatgttaacatactgcttattatcatcatt
gctgtgtctctgggaattatcatattgcttgtagttttggctgtggtgattttctttgtc
aaatcacacagaaggaaaaaggatcaagatgcagcaaacaggactcttgcatcaggaact
gccttacagaaactggatgaatgcactccaggaccgggaggtgacagtatctaccaccaa
actctgccaggttatgctgctgatcaaggaggagccgggggtggtccctaccctagaggg
ggctctttggatccctctcactccagtggtagaggatcggctgaggcagcagaggatgat
gagatccggatgattaacgagtaccctcgtgttgcctcaattacctcgtctatgcaggaa
cacatatctgccagaggacccgattctggaattcagcaggatgccgaccagctttctgac
atttcctgtgaacctgctgctttggagggcagcagctggttcaaagggaagaagttagga
ggcagtctgagtgggaccttgctttctggtcagctccctgtttacagggatgaaggaggt
ggctacctaggagtaggtcgtggtctgaacatttctctcccaaaggattatgctttccct
gaggacggtaaaccttcggtggacggttctcttactgctattgtcgcaagtgatgaggag
cttcgtggaagttataattgggattacctactcaattggtgccctcagtttcaacctctt
gccaatgttttcacagagattgctcggctaaaagatgaaaccgcacagcaaagtcagaac
cctcgacagccctttcaacccaagcccaaaatagatcccaaacctagaattgacccacca
cctcttattacatcagtggctcacccaggggctatgacagtacctccaaaagtccctgtt
attgggcgaacattcccccacttgtcctctctacgaaggtcccccattagccatgaagga
tcaatttcctctgcagcaatgtcgccaagcttctctccttctctgtcccctttggctgct
cggtcaccagctgtttctccatttggtgtaaaccaaggcccctctgcatcaatgatcagc
accagagagccctcacttgagcaaagtccagatcatgagatgagaatatga
DBGET
integrated database retrieval system
