Cyprinodon tularosa (White Sands pupfish): 119785538
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Entry
119785538 CDS
T07496
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119785538 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119785538 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119785538 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctul00535
]
119785538 (col9a1a)
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Others
119785538 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119785538
NCBI-ProteinID:
XP_038144189
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MALFRIHQEGFLVVLLQIVLICSAQRGAVGPRGPPGPPGIVGVPGVDGIDGDRGEDSNVT
GPPGIPGDNGKDGSPGASGRLGADGPVGPPGNPGPVGQKGSKGERGARGPAGEPGVGPDG
TDGIPGTDGLPGELGRAGPPGSRGRRGPVGLPGLAGPRGPPAVYQGEDLCPNACPPGLTG
YSGLPGMKGHKGAKGESGEPGRQGHKGVEGDQGPPGEVGAQGLPGPGVKRGAPGIMGPKG
ERGPRGSPGDVGPRGALGAPGDPGQRGGSGESGQIGVQGDRGPPGIRGVPGPKGEPGLPG
PDGREGIPGLPGSKGPPGKSGAPGDAGPQGLSGLPGSYGQKGHSGAKGSTGDRGVVGLMG
SPGKQGERGDQGEVGPAGPRGGNGERGETGPNGPPGIPGARGSKGDPGFPGLPGPAGYRG
QKGDRGSVGLTGPKGDQGPAGAEGTPGDKGEVGDQGEPGEKGSQGPPGETGNKGAEGGRG
PPGKEGKPGQAGPRGMQGDTGVPGLPGHQGPAGKAPTDRHIKQVCMRVMQEQLAQLAASL
SRPESGVAGLPGPPGPPGPPGSPGENGFPGHTGSRGLPGLKGPPGLIGLKGPKGDQGDRG
DRGPTVRGPKGEPGVPGLPGEPGRAAYGVNGRDGERGPRGVLGINGVPGSPGPAGRNGYC
EPSQCVPAMVPPPSFGKNSETKGPSEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctcttcaggatccatcaggagggttttctggtggttttactgcagattgtcttg
atttgttccgctcagaggggcgcggttggtcccagaggcccccctggaccgcctgggatc
gttggagtacctggagtggatggaatcgacggtgatagaggggaggactccaatgtaact
ggaccgccgggtattcccggggataatggaaaagacgggtctccaggagcttcaggccgt
ctaggagcagatggaccggtgggacccccagggaatccaggccctgtgggacagaaaggc
tccaaaggggaacgtggagctcggggacctgcaggagaaccaggggtaggacctgatggg
actgatggtattcctggtactgatgggctaccaggtgaactggggagagctggacctcct
ggatcgagagggaggagaggtcccgtcggtctaccaggtcttgctggtcctcggggacct
ccagctgtttaccagggggaggatctgtgcccgaacgcctgccccccaggtctgactgga
tattctggactccctggaatgaaaggccacaaaggggctaagggcgaatcaggtgagccc
ggaagacaaggacacaagggagtggagggcgatcagggaccccccggtgaagttggagct
caaggactgccaggccctggtgtgaaaagaggggctccaggaataatgggccccaaagga
gaacgggggcctcgtgggagccccggtgatgtagggcctcggggagctctgggagcacca
ggggatccgggtcaacgaggaggatcaggagagagcggacagataggagtacagggggac
cgaggccctccaggaatcaggggcgttccagggccaaaaggagaacctggcctccctggt
ccagatggtcgtgaaggaatacctgggttgcctggttctaagggtcctccaggtaaaagc
ggagctccaggtgatgcaggcccacagggactttctggtttacccggttcatatggccag
aaaggacacagcggtgcaaagggaagcacaggggacagaggagtcgtgggactgatgggg
tctccaggaaaacaaggggagcgaggagaccagggggaagttggaccggctgggcccaga
ggaggaaatggtgaacgtggagagacaggacctaatggacctcctgggataccaggagcc
aggggaagcaaaggggacccaggctttccagggcttcctggtccggctggttatcgaggc
caaaagggggaccggggttctgttggactcactggccctaaaggagaccagggacctgca
ggcgctgaaggaacccccggagataaaggcgaagtgggcgatcaaggagaaccaggagag
aaaggatcgcaaggaccaccaggagagacgggaaacaaaggagctgaggggggccgtggg
ccgccaggcaaagagggcaagccgggtcaggcaggaccacgaggcatgcagggagataca
ggggtaccgggcctacctgggcaccagggtccagcgggcaaagccccgacggacagacac
atcaaacaggtctgcatgagagtcatgcaagagcagctggcccagttggcggccagcctg
agcagaccagaatccggcgtggccgggctccccggccctcctggcccacctggacctcca
ggctctcccggagagaatggatttccaggccacaccgggtcaagaggtctccctggtttg
aagggtccacctgggttaatcggactcaaaggaccgaaaggcgaccaaggggacagaggt
gacagggggcccacagtgaggggacccaaaggggaacctggcgttcctggactaccaggt
gaacccgggcgagccgcctatggtgtgaacggccgtgatggagagcggggaccgcgcggc
gttcttggaatcaatggcgttccgggatctccggggcccgctggcaggaacggctactgc
gagccgtcgcagtgcgtccctgctatggtgccgccgcccagctttggaaagaactctgag
acgaagggccccagcgagatgtga
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