Cyprinodon tularosa (White Sands pupfish): 119794410
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Entry
119794410 CDS
T07496
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ctul04040
]
119794410 (scn1lab)
Ion channels [BR:
ctul04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119794410 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
IQ
New_glue
Motif
Other DBs
NCBI-GeneID:
119794410
NCBI-ProteinID:
XP_038157887
LinkDB
All DBs
Position
Unknown
AA seq
2006 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRAERRSDDDDENGPKPNSDLEAGK
SLPFIYGDIPPGMVSTPLEDLDPYYSNQKTFIVLNRGKAIFRFNATSALYILNPFNPLRR
IAIKVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRVPDISNSSGSLNVTGNGTGP
SNATLEWIEYISDESNYYYLPGRRDALLCGNGSGAGLCPEGFVCLKTGRNPDYGYTSFDT
FSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYD
EQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGGPTSESSSGTSK
LSSKSAKERRNRRKKRKQREEEEERGVCDKFHKSMSEDSIKRSSFRFSIDANRLSYEKRC
SSPNQSLLSVRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFEESDSRRGSLF
LPRRLERRCSAVSQMSLGAPRIVLPANGKMHCSVDCNGVVSLVGGTSVTTSPVGLLLPEG
TTTDTEIKKRRSGFLQPSMDYLDEPGARQRALSVASILTNTMEELEESRQKCPPCWYRFA
NKCLIWDCCPAWLKIKEVVSMVVMDPFVDLAITICIVLNTLFMAMEHYPMTKEFDNLLTI
GNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSVLRSFR
LLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCK
ISEDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCIIVFMMVMVIGNLV
VLNLFLALLLSSFSADNLAATDEDSEMNNLQIAVGRIQRGISYVKAKVRQFLQSLCFGGG
KGSGLAEESKPLDDLQSNGKGNCISNHTPLEITKDSSGVYLMEGNGKPGGLTVGVGGDTT
NKYAMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEKLDVDPQP
LSSSEGSTVDIRPPGDGVESVELEPEESLDPEACFTEGCVSRFPCCQVSEDVGWFKSWWT
LRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRRTIKTVLEYADKVFTYIFILE
MLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELSAIKTLRTLRALRPLRA
LSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNTTNDELFP
ISIVNNKTECLNLVNNSARWRNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRDLE
EQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPTNEFQGFVFDCVTKQAFDIVIMILICLNMVTMMVETDDQTKE
MDKILYRINLVFIVLFTGECALKMISLRHFYFTIGWNIFDFVVVILSIVGMFLSEVIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFA
MSNFAYVKRESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNKREPDCDSKIEHP
GNYYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMF
YEVWERFDPDATQFVEYSKLSDFADALDPPLRIAKPNMIQLIAMDLPMVSGERIHCLDIL
FAFTKRVLGEGGEMDMLRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIVIQRAFRR
YMMHQAMKKASALYKEKLKEGVHDPDKDVMVISKFNENSTSDKTDMTPSTASPPSYNSVT
KSDKDKYEKENREKENKGKDLKDRKK
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggaccagacagcttccgccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggcgaccgcgggcggagcgt
cgcagcgacgacgacgatgaaaatgggcccaagcccaacagcgacctggaggcagggaaa
tctctgcccttcatctacggggacattcctccaggaatggtgtcgacccctctggaggac
ctggacccctattacagcaaccagaagaccttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaatgccacttctgccttgtacatcctaaaccccttcaaccctctgaggagg
atagctatcaaagttttagtgcactcgatgtttagcatgttgatcatgttcaccattctg
accaactgtgctttcatgaccctgagcaacccgccggaatgggcaaagaatgtagagtac
acattcacagggatttacacctttgagtctctaataaagatcctggccagggggttttgt
gtggggaagttcacttttctgcgggacccgtggaactggctggatttcagcgtcatactt
atggcgtatataacagagtttgtaaacctaggcaatgtttcagctctgcgcacattcaga
gttttgcgagctttgaaaactatctcagttataccaggcctgaagaccatagtcggcgct
ctgatccagtctgtgaagaagctgtcggacgtgatgatcctcaccgtgttctgcctcagc
gtcttcgctctgatcggcctgcaactcttcatgggcaacctgaggcagaagtgcgtgcgt
gtgccagacatcagcaacagcagcggcagcctcaacgtgacggggaatggcaccggtccg
tccaacgccacgctggagtggatagagtacatcagtgatgagagtaattattattacctt
cctggtcgtagggacgctctgctctgtggaaatggcagcggtgcaggactctgtccagag
gggtttgtttgtctcaaaacgggccgtaatccagactacggctacacgagcttcgacacc
ttcagctgggccttcctctctctgtttcgactcatgacgcaggactactgggaaaacctc
taccaacagactttgcgtgcagcagggaagccctatatgatcttcttcgtgctggtgatc
ttcctcggctccttttacctcattaacctgatcctggctgtggtagccatggcttacgat
gagcagaaccaggccaccatcgaggaggctcagcagaaggaggaggagttccaggccatg
ctggagcagctgaagaggcagcaggaggaggcgcaggttgccgcggcagcagccacggag
agcggagagtacagcgggagagggggccccacctctgagtcctcctcggggacgtccaag
ctgagctccaaaagcgccaaggagcgacgcaacaggaggaagaagaggaagcagcgcgag
gaggaggaggagaggggcgtgtgcgacaagttccacaagtccatgtcagaggacagcatc
aagaggtccagcttccgcttctccatcgatgctaaccggctgtcctatgagaaaagatgc
tcctcacccaaccagtctctcctcagtgtccgtggttccctcttctcgccccggaggaac
agccgcgccagcctcttcagcttccgcggccgagcccgcgacatgggctcggagaacgac
ttcgccgacgacgagcacagcaccttcgaagagagcgacagtcgccgggggtccctgttc
ctgccgcgccgcctcgagcgccgctgcagcgccgttagccagatgagcctcggggcgccg
cggatcgtgctccccgccaacgggaagatgcactgctcggtcgactgcaacggggtggtt
tcgctggtcggtgggacatctgtaacaacctctcctgtaggtctcctgctacctgaggga
acaacaacagataccgagataaagaagcgccgatctggattcctgcagccttccatggac
tatttagatgaaccgggggcgcggcagagagccttgagtgtagccagcatactcaccaac
acaatggaagagctggaagagtccagacagaagtgccctccctgctggtatcgatttgcc
aacaagtgtctgatttgggactgctgtcccgcatggctgaaaatcaaagaggtggtcagc
atggtggtcatggacccctttgtggatctggccatcaccatctgcatcgtcctcaacact
cttttcatggccatggagcactacccaatgactaaggaatttgataacctcctcaccatt
ggaaacctggtgtttacaggcatcttcacagctgaaatgtgcttcaagatcatcgccctg
gatccttactattattttcaggaaggctggaacatctttgacggtatcattgttagcctc
agtctcatggagctgggcttggctaacgtcgaaggcctgtctgtgctcaggtccttcaga
ttgcttcgagtcttcaaactcgccaagtcctggcccactctcaacatgctgatcaagatc
atcggtaactcggtgggcgctctgggcaacctgactcttgtgctggccattatcgtcttc
atcttcgccgtggtgggcatgcagctgttcggcaagagctacaaggagtgcgtgtgcaag
atttcagaagactgcgagctgccgcgctggcacatgcacgacttcttccactccttcctc
atcgtgttccgggtgctgtgcggggagtggatagagaccatgtgggactgcatggaggtg
gcaggacagaccatgtgcattattgtcttcatgatggtcatggtgatcggaaacctagtg
gttctcaacctttttctggctctcctcctgagctcattcagtgcagacaacctggccgcc
accgacgaagacagcgagatgaacaacctgcagatcgccgtcggacgcatccagcgcggc
atctcttacgtcaaagccaaagtgcgacagttcctccagagcctctgcttcggcggcggg
aagggatccggcctggctgaggagagcaaacccctggatgatctacagagtaatggaaag
gggaactgcatttctaaccacactccactggagatcaccaaagactccagcggggtatac
ttgatggagggcaacggaaagccaggagggctgactgttggggtgggtggggacaccacc
aacaagtacgcaatggaggaatgcgactatatgtcctttattcacaaccccagcctgact
gtgaccgtccccatcgccgttggcgagtcagactttgaaaacctaaacacggaggatttc
agcagtgactcctctgacgtggagggaagcaaagagaagctggacgtagacccccagccc
ttaagctcatcggaggggagcacagttgatatccgtcccccaggagatggggttgaatct
gtggagctggaacccgaggagtcattagacccagaagcctgctttacagaaggctgtgtg
agtcggttcccatgctgtcaggtcagcgaggatgtaggatggttcaagagctggtggacg
ctcagaaaaacctgctttatcatcgtggagcacaactggtttgagtccttcatcatattt
atgatcctgctcagcagtggagcgttggcgtttgaagacatttacatcgagcagcggcgg
accatcaaaacagtcctggaatatgcagacaaggtcttcacttatatcttcatcctggaa
atgctgcttaagtgggtggcgtacggctttgttaagtacttcaccaacgcttggtgctgg
ctcgacttcctcatagtcgacgtgtccttggttagcctcgtagcgaatgctctgggctac
tctgagctcagcgccatcaaaactctgaggacactgcgagccctacggcccctgagggcc
ctgtctcggtttgagggcatgagggttgtggtgaatgctctacttggtgccatcccttcc
atcatgaacgtgctcctggtttgcctcatcttctggcttatcttcagcatcatgggggtc
aacctctttgcagggaagtactaccattgcgtcaacaccaccaacgatgagctcttccca
atcagcatcgtcaacaacaagacggagtgcttgaacttggttaacaatagcgcccgctgg
aggaatgtcaaaatcaactttgacaatgtgggcgccggttatctggctctgctgcaagtg
gcaacgtttaagggttggatggacatcatgtatgctgctgtggactctcgtgatttggaa
gagcagcctgaatatgaagtgaacctgtatatgtacctctactttgtcatcttcatcatc
tttggctccttcttcacccttaatctgtttattggtgtcatcatcgacaacttcaaccag
cagaagaaaaagtttggaggtcaagacatcttcatgacagaagaacagaagaaatactac
aatgccatgaagaaactgggttcaaagaaaccacaaaaacccattccacggccaaccaat
gaatttcaaggctttgtgtttgactgtgtcacaaagcaggcgtttgatatagtaatcatg
atcctcatctgcctcaacatggtgactatgatggtggagacggatgaccaaacaaaggaa
atggacaaaatcctttaccggatcaaccttgtctttattgtgctgttcactggggagtgt
gcgctaaagatgatctcccttcgacacttttatttcactatcggttggaacatatttgac
tttgtggtagtgattctttcgattgtaggtatgtttttatctgaagttatcgagaagtac
tttgtgtccccaacattgttccgagtgatccgacttgcccggataggccgcatccttcgc
cttataaagggtgccaagggaatccggactctcctctttgccttgatgatgtcactccct
gccttgttcaacatcggccttcttcttttcctggttatgtttatctatgccatcttcgca
atgtccaactttgcgtatgtcaagcgggagtcggggatcgacgacatgtttaatttcgag
actttcgggaacagtatgatctgtttgtttcagattacaacatcagctgggtgggatggt
ctgttggcacccattctgaataaaagagagccagactgtgacagcaagatagagcaccct
gggaactactacaaaggcaactgtggtaacccttcagtgggcatctttttcttcgtcagc
tacatcatcatttgctttctgattgtggtcaacatgtacattgccgtcatcctggagaac
ttcagtgtggccacagaggaaagtgccgaaccattaagtgaggacgactttgagatgttc
tacgaagtatgggagcgctttgatcctgatgctactcagtttgtggagtacagcaagctc
tctgactttgcagatgctctcgatccgccacttcgcattgctaaacccaatatgatccaa
cttatagctatggacctacctatggtgagtggcgaacgcatccactgcctggacatcctg
tttgctttcactaagcgagtgttgggtgaaggtggagagatggacatgttacgtggacag
atggaggagcgattcatggcctccaacccttctaaagtttcctatgagccaattactacc
acattgcgccgcaagcaggaggaaatgtcggccatagttatccagagagccttccggcgc
tacatgatgcaccaggccatgaaaaaggcctccgctctctacaaggagaagctaaaggag
ggcgtccatgaccctgacaaagacgtgatggtcatcagcaagttcaatgagaattccacc
tcagataaaacagacatgactccgtccaccgcctccccgccctcctacaacagtgtgaca
aagtcagacaaagacaaatatgaaaaagaaaatagggaaaaggaaaacaaagggaaagac
ttgaaagacagaaaaaaatag
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integrated database retrieval system
