Cyprinodon tularosa (White Sands pupfish): 119796608
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Entry
119796608 CDS
T07496
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04382
Cornified envelope formation
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04518
Integrin signaling
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119796608 (col4a5)
04518 Integrin signaling
119796608 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119796608 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119796608 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119796608 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctul04147
]
119796608 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119796608 (col4a5)
Exosome [BR:
ctul04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119796608 (col4a5)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119796608 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119796608
NCBI-ProteinID:
XP_038161163
LinkDB
All DBs
Position
Unknown
AA seq
1687 aa
AA seq
DB search
MTKDLWRLRQLDWAVILLVLSATLQQSNSAACHGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPQGLSGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGQ
RGVPGCNGTKGEPGFPGSSGIPGVQGIPGPPGLPGQKGDPGDVISTNLFGEKGAVGLPGL
PGAPGPPGLQGFQGPIGPPGPAGYPGSPGPPGPPGPKGNMALNFEGPKGEKGDPGIPGPP
GPPGPGQGEQIRPPPTEIQRGDKGDPGPPGPPGDPGIPGAPGPSGGRKGEKGEPGEAGKR
GKPGKDGDPGPPGFPGIKGEPGIPGIPGRDGERGPRGDRGFPGPPGQVFNGNGGGVGQKG
EPGFPGSPGPKGERGLQGLPGPAGAPGIPGLGGSGPPGSPGFPGGKGQKGDPGTPSVALP
GPPGRPGNPGADGPPGPPGPPGSPRPIENCLPGQPGLPGVPGETGFPGGPGQKGEKGETC
VNCFGGGIGVPGPQGPPGPPGPLGPGGPPGIKGDRGFPGTPGLPGSPGNTGPQGLPGFPG
QKGDPGEASTVTGVRGEKGDPGFPGPPGLPGLDGRQGRDGQPGPPGPKGTPGSLLVKGER
GPPGETGPPGIPGDRGPPGQAGFGVPGLPGEKGVPGNIGSPGTNGAKGAKGEPGLPNTVK
GQPGPPGPSGEPGRPGPPGSPGQPGQPGFPGLAGPKGDPGQPGIGLPGPPGVKGFPGIPG
QPGRPGEKGIPGIDGLPGTPGFPGSKGEPGFGLPGPPGQPGIPGAKGFTGPKGDSGFPGN
PGGPGRPGSDGFPGTKGDPGTPGRPGPPGPPGSTTGGAVGPPGPPGPQGPMGPPGFPGGS
GEKGDPGPPGLDIPGPPGEKGNPGFPGAPGPIGIPGPPGGPGRDGRPGIPGLKGDMGPIG
PPGQPGGPGTPGGPGAPGFKGEPGFPGRNGVPGAPGSKGDKGDKGFQGPPGPPAPINIAG
QKGDPGPQGLAGPPGVKGISGLPGEPGLPGQDGRPGAPGPPGFKGEPGFPGNPGGPGIPG
PKGNMGDMGIPGPAGLKGTAGFPGRPGTPGQPGTPGPQGQKGEPGSAGTGPPGIPGSKGD
PGQPGFPGNPGLKGSPGTPGLPGLPGLPGAKGDVGLPGFQGPPGSPGPKGLDGGPGAPGL
NGGPGRPGEPGRPGPLGPVGEKGQPGRDGIPGPAGVKGEPGIPGFGTPGPAGSRGLPGEK
GDPGPPGPAGGPGFPGSKGDPGFQGPPGPPGLSGPPGPPGQSFQGAKGIQGPPGPPGRSG
PSGPPGPPGPEGPRGLPGSGGGRGEKGNPGNPGQPGLPGQKGDIGFPGPPGPAGGPGGPG
IKGDPGFPGTPGFPGQKGDPGLPGPSGLPGDPGADGFPGPPGEPAPRQPVIVVKGDRGPP
GPRGGPGPPGSTGPPGPSGSPGLPGPPGDPGTPGPPGFNGPPGGKGDTGPAGRPGLKGNP
GPPGSDGPQGPPGIPGSGSAAHGFLLTRHSQTEFPPSCPDGTNPIYDGYSLLYVQGNERA
HGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTPEPMPMSMEAVTGESIK
PFISRCSVCEAPAMVIAVHSQTIQVPSCPASWSLLWIGYSFMMHTSAGAEGSGQALASPG
SCLEEFRSAPFIECHGRGSCNYFSNSYSFWLATVEVSEMFRKPQSETLKAGNLHTRVSRC
VVCMKRT
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagacttgtggcgcctgcgacagctcgactgggctgtgattttgctggtcctg
agcgccactctgcaacaatctaactctgctgcttgccatggatgtgggggttccaagtgt
gactgcagtggagtaaaaggagagaagggggagagaggtttcccaggtcttactggacag
ccgggggtcccagggtttcctggacctgagggtccaattggacctagaggagagaaggga
agtgatggacctcagggactatctggtccaaaaggaataagaggaccacctggtttacct
ggatttccaggaacgccaggacttccaggtttgccaggacaggacggtccaccgggccaa
agaggggtgccaggttgtaatgggacaaagggtgaacctggttttccaggatcttcggga
atacctggagtacaaggaattccaggtccacctggtctcccaggacaaaagggagacccc
ggtgatgtaatttccacaaatctttttggagaaaaaggagcagtgggactacctggattg
ccgggagctccgggtccacctggattacaaggttttcaaggcccaattggccctccggga
cccgcaggctatcctggttcccctggtccaccaggtccgcctggacctaagggaaacatg
gctttgaacttcgaaggacccaaaggagaaaagggtgatccaggcatcccagggcctccc
ggtcctccaggtccaggacagggggaacagatccgaccaccaccaacagagattcagaga
ggggacaagggtgaccctggccctccgggcccgccaggtgaccctggcattccaggtgct
cctggtccctctggtggacgaaaaggagagaagggagaaccaggagaggcaggcaaacgg
ggaaaacccggcaaagatggagaccctggtcctccaggattccctgggatcaaaggtgaa
cctggaattccaggtattccaggccgggatggagagagagggccaagaggtgatagagga
tttccgggacctccaggacaggttttcaatggaaatggtggaggcgttggtcaaaaagga
gaacctgggtttcctggaagtcctggacctaaaggcgaaagaggactacagggtttacca
ggacctgccggagcacctggaattccaggcctaggcggaagcggtcctcctggatctcca
ggattcccaggaggcaagggtcagaagggagacccaggcactccttctgtcgccttgcca
ggtcccccaggacgtccaggaaatcccggcgccgatggtccaccagggccccccggacct
cctggatcacccagaccaattgaaaattgccttcctgggcagcctggacttcctggagtg
cctggtgaaacagggttccccggagggccgggccagaaaggtgaaaagggagagacctgt
gtcaactgctttggaggaggcattggtgttcctggcccccaagggcctccaggaccgcct
ggaccattagggcctggtggtccaccaggtatcaagggagaccgaggttttccaggaaca
ccgggccttcctggatctcctggtaacactggtcctcaaggtcttccagggttccctgga
cagaagggagatccgggagaagccagcacagtcacaggtgtaagaggagagaaaggtgat
cctggtttccctggacccccggggctgcctggtctggatggtcggcagggtcgagatgga
cagcctggacctcctggccccaaaggaactcctggttcattacttgtaaaaggagaacga
ggtccgcctggggagacaggtccacccggcatcccaggagacagaggtccgccaggtcaa
gctggctttggagttccaggtctaccaggagagaaaggtgttccaggcaacataggaagt
cctggaactaatggagcaaaaggtgccaaaggtgaacctggcttgcctaacacagtaaaa
ggtcagccaggaccccctggaccgagtggcgagccaggacgaccaggtccaccaggttcc
ccaggtcagccaggacagcctggtttcccaggtttagctggaccaaaaggtgatcctgga
caaccaggtattggactcccaggtcctccaggagtgaaaggattcccaggtattccaggt
cagccaggaagacctggagaaaaaggtataccaggaatagatggactccccggaacgcct
gggtttcctggttcaaagggtgagccaggttttggacttcctggtcctccaggtcaacca
ggaatacctggagctaaaggtttcactggaccaaagggagattctggtttccctggcaac
ccaggcggaccaggacgacctgggtctgatggatttccaggcactaaaggggacccgggc
acacctggtcgacctggacctcctggaccccctggaagtacaacaggtggtgcagttggt
cctcctggtcctcctggacctcaaggcccaatgggaccaccaggattcccaggaggaagt
ggagaaaagggtgacccagggccaccaggcttagacatcccaggtccaccgggtgagaaa
ggaaatcctggttttccaggtgcccctggaccgataggaatcccaggaccccccggagga
cctggaagggacggcaggcccggaataccaggtctgaaaggtgacatgggtccaatagga
cctccaggacaacctgggggacctggcactccaggagggcctggtgcaccaggatttaaa
ggtgaaccaggatttccaggcagaaatggagtcccaggtgctccaggttccaaaggagat
aaaggagacaaaggattccaaggaccccctggaccccctgcaccaataaatattgctgga
caaaaaggagatcctggaccacaaggtttagcaggcccacctggagtaaaaggcatttca
ggtcttcctggtgaacctggattacctggacaagatggacgccctggagctcctggacca
ccaggatttaaaggagaacctggattcccagggaatcctggtggccctggaattccaggt
ccaaaaggcaacatgggagatatgggaattccaggacctgcagggctgaaaggtacagca
ggttttccaggtaggccaggaaccccaggtcagccgggaacacctggccctcaaggacaa
aaaggtgaaccaggttctgctggcactggaccaccaggaataccaggatcgaagggagat
ccaggtcaaccgggtttcccaggaaatcctggacttaaaggaagtccaggcacacctggc
cttcctggtttaccaggcttaccaggggctaaaggagatgtaggcctcccaggattccaa
ggtccccctggtagccctggtccaaagggtcttgatggtgggcctggtgccccaggactc
aatggaggtccaggtagaccaggagagcctggtcgaccaggaccccttggacccgttgga
gagaagggtcagccaggaagagatggcatcccaggaccagctggagtaaaaggagagcct
ggaattcctggctttggtactcctggtcctgctggaagtcgagggttgccaggtgagaag
ggagacccaggtcctcctggtccagctggcggcccaggctttcctggctctaaaggagat
cccggcttccaaggtcctccaggtcctccaggtctcagtggccctccaggacctccagga
cagtcattccagggcgctaaagggattcaaggaccccctggaccacctggaagatcaggc
ccctcaggtcctccaggtccccctggaccagagggtccccgtgggctgccaggaagtggc
ggtggtaggggtgagaagggtaaccctggaaatccaggtcagccaggccttcctggtcag
aaaggagatattggttttccaggacctccgggtcctgctggtggccctgggggcccgggt
ataaagggagacccaggatttccaggaactcccggcttcccaggacaaaagggagaccca
ggactacctggtccaagcggacttcctggagatcctggtgcggatggatttccaggtcct
cctggagagccggctcctaggcaacctgttatagtagtgaaaggagacagaggacctcct
ggtccacggggaggtccaggtccaccagggtccactggtccccccggaccctctggatcc
ccaggtctaccaggtccacctggagatcctggtacacctggtcccccaggcttcaacggt
ccaccgggtgggaaaggagacactggacctgcaggacggcctggtctaaagggcaaccct
ggtccacctggttcagatggaccacagggtccgccgggtattcccgggtctggctcagca
gcccacggcttcctcctcaccagacacagccagactgaatttccaccaagctgtcctgat
ggaacgaaccccatctatgatggatattctctgttatacgtgcagggcaacgagagggcg
cacggacaggacctcggcacagccggcagctgtctgcgcagattcagccccatgcctttc
atgttttgcaacatcaacaacgtctgcaactttgctgcccgtaacgactactcctactgg
ctgtccactccggaacccatgcctatgtccatggaggctgtgactggagagagcatcaag
cctttcatcagcaggtgttccgtgtgtgaagctccagctatggtgattgcagtccacagc
cagaccatccaggttccttcttgccctgccagttggagtctcctgtggattggatactcc
ttcatgatgcacactagcgcaggcgccgagggctccggtcaggcgctggcctccccaggc
tcctgcctggaggagttccgcagcgctcccttcatagagtgccacggtagaggctcctgt
aactacttcagcaactcctacagcttctggctggctactgtggaggtttcagaaatgttc
aggaagccccagtcagagacattaaaagcaggtaacctacatacacgcgtcagccgctgt
gtggtttgcatgaagagaacgtaa
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integrated database retrieval system
