Acetivibrio thermocellus DSM 1313: Clo1313_0501
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Entry
Clo1313_0501 CDS
T01933
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx00040
Pentose and glucuronate interconversions
ctx01100
Metabolic pathways
ctx02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Clo1313_0501
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Clo1313_0501
Enzymes [BR:
ctx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Clo1313_0501
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Motif
Pfam:
Pectate_lyase_4
Dockerin_1
CBM_6
CBM_35
CBM13-like
CBM_35_2
Cadherin-like
FG-GAP_3
DUF642
Inhibitor_I42
DUF6805
Motif
Other DBs
NCBI-ProteinID:
ADU73590
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Position
complement(550720..552384)
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AA seq
554 aa
AA seq
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MSRCWVKCISSMLAISLILFASLTLTASLIVASFLPAATTYAQTVSPLDRPIGWASEAGG
TIGGGNAAPVIVTSASELQNLVKDNTPRVIYVQGNIGGNYTVGSNKTIIGLPGATTGSWT
FKGSSNVILRNLKIRGNGADGDAVTVTDYSHHIWFDHLDLADSTDENLSIKRGSDYITIS
WCKYWFSRDGGHTFGGLIGHSDNNAAQDEGRLRVTYHHNWYSKGVTERMPRVRFGKVHIF
NNLFDAPGNNYVIRCGYKANIRSEGNVFVNMKNCFDFSTSSPDSVLQSINDLFIGNCSGT
TGRGIAFVPPYQYTVEPTAGLKEKIEAGAGATLNVPGTFSPTPSPSNTPTATPTPASIVY
GDLNNDGRTNSTDYSLMKRYLLGSISFTNEQLKAADVNLDGKVNSSDYTVLRRFLLGSID
LLPYNGTATYQAEDAVFSGAIFETKNAGYTGTGYVNYDNVPGGYIEWTLNIANAGTYTLT
LTYANGTSSNRTVDISVNGNIVASGVVFGGTGSWTQWQTKSITASLNSGVNKIRVTGTSS
DGGPNIDKLEIRRN
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagatgttgggtaaaatgtatttcttcaatgttggcaatttctttaatattattt
gcttctttaacgttaacggcttcattaatagtagcctcgttcttacctgcagccaccact
tatgcccagaccgtgtcacctttggatagacctataggatgggcgtcggaagccggagga
accataggtggcggaaatgctgcaccggtgattgtaacaagtgcaagcgaacttcaaaat
cttgtcaaagataacactccaagagttatttacgtacagggaaacatcggcggcaactat
accgtaggatccaacaaaaccatcatcggcttacccggcgcaacgacaggcagttggacg
tttaaaggctcatccaacgttatattgagaaaccttaaaataagaggaaacggtgcagac
ggcgatgccgtgaccgttacggactattcccatcatatttggtttgaccaccttgatttg
gccgactcaaccgacgaaaatctcagcataaaacgcggaagcgattacataaccatttcc
tggtgcaaatactggttttcaagggacggaggccacacattcggaggcctgatcggacat
agtgataataacgcagcgcaggacgagggaaggcttagggtaacctatcatcacaactgg
tattcaaagggagtaacagagcgtatgccccgtgtccgttttggaaaagttcatattttc
aacaacttgttcgacgctcccggcaacaattatgtcattcgctgtggttacaaagcaaac
atccgctctgaaggcaatgtcttcgttaacatgaaaaattgctttgactttagcacttct
tctccggactccgtactccagagcattaatgatttgtttataggaaattgtagcggaaca
accggaagaggtattgctttcgttcctccctatcaatacaccgtcgaaccgaccgcggga
cttaaagaaaagattgaagcaggggcgggagcaacgttaaatgtcccgggaacattctcc
cccacaccgtcaccttcaaatacccctactgcaacaccaacacctgcaagtatagtgtac
ggagatttgaataatgacggcaggacaaattcaactgactattcattaatgaaaagatac
cttcttggttccataagctttacaaatgaacagcttaaagcagcggatgtaaatctcgac
ggtaaagtaaactcctctgattatactgtattaagaagattcttactgggttcgatcgac
ttgttgccatataacggaaccgcgacttaccaggctgaagatgcagttttcagcggcgct
atatttgaaacaaaaaatgcaggctacacaggaacaggctatgtaaattatgacaatgta
cccggcggatatatcgaatggacactgaacatagctaatgcaggaacatataccctgaca
cttacatatgcaaacggaacttcgtcaaacaggacggttgacataagcgtaaacggtaat
atcgttgcctccggtgttgtatttggaggaacagggtcatggacacagtggcagaccaag
agtataactgcctcattaaattccggagttaacaaaatcagagttaccggcacatcatca
gacggaggtcccaacatcgataaactcgaaataaggagaaattaa
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