Clostridium tyrobutyricum: CTK_C28960
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Entry
CTK_C28960 CDS
T04331
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTK_C28960 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctyk03021
]
CTK_C28960 (rpoB)
03400 DNA repair and recombination proteins [BR:
ctyk03400
]
CTK_C28960 (rpoB)
Enzymes [BR:
ctyk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTK_C28960 (rpoB)
Transcription machinery [BR:
ctyk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTK_C28960 (rpoB)
DNA repair and recombination proteins [BR:
ctyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTK_C28960 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF4369
Motif
Other DBs
NCBI-ProteinID:
AND86136
LinkDB
All DBs
Position
complement(2890604..2894335)
Genome browser
AA seq
1243 aa
AA seq
DB search
MVHPVQVGKRTRMSFSRLKEIGNMPNLIEVQLDSYKWFLKEGLQEVFDDINPIQDYTANL
NLEFVGYKLDMDSIKYSVEECKERDATYAAPLKVKVRLLNKETGEVKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYDMSLDKTGKKLFSSTVIPNRGAWLEYETDSNDII
YVRIDKTRKLPITILARAMGYGTDAEVTEFFGEDERLKATIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAQSLIDSLFFDAKRYDLSRVGRYKFNKKLAIYLRIVNQIAASDVVNPVTG
EILVQKGERIDRERAVEIQQSGINIVDIQLEDTVLRVIGNNFVNIHNFVDFNIDDLHIKE
NVYYPVLKEILDNYSDEESIKDQIRKHMHELIPKHILKDDIYATISYELGLSYNVGHTDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGTGGLSRERAGFEVRDVHNSHYGRMCPIETP
EGPNIGLINSLASYAKVNEYGFIEAPYRKVDKSKGKVTDEIVYMTADEEDEYLIGQANEP
LDEEGRFIDSKVTVRDKGEVIVVPSEDVDFIDISARQIVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPIVGTGIEYKAAVDSGVLPKARNAGTVVYVSANEIRIKRDSDGGI
DTYMLTKFKRSNQGTCINQRPIVEKGEKVLKRSVIADGPSTDLGEIALGKNIRMGFTTWE
GYNYEDAMLISEELVKEDVFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKDIDER
GIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEYGII
VDVRVFTRENGDELPPGVNKLVRCYIAQKRKISVGDKMSGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASKLGWHVATPVFDGAREEDILECLEKA
GYKSHGKTVLYDGRTGEPFDNLVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALYAYGAAHTLQEVMTVKSDDVVGRVKTYEAIVKGENIPEPGMPES
FKVLIKELQALCLDVKVLNDKNEEIKLRESMDDDVEDLGVNIEGNEDASAQIQNNKKEYL
TKHSDSNKDNNENNGKENEDSDGNLTLDDLQADLDIDDFSDEH
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaggttggtaaaagaactagaatgagcttttctagacttaaggaa
ataggtaatatgcctaacttaattgaggtacaattagattcctataagtggtttttaaaa
gagggtctgcaagaagtatttgatgacatcaatcctatccaagattatactgcaaatctt
aacctagaatttgtaggttataaattagatatggatagtattaaatactctgttgaagaa
tgtaaagaaagagatgctacctatgcagcaccactgaaagttaaagttagactattaaat
aaagaaactggagaagttaaagaacaagaagttttcatgggagattttcctcttatgaca
gagcagggaacttttataattaatggagcggaaagagttatagtaagtcagcttgtaaga
tcaccaggagtatattatgacatgtcacttgataaaacaggtaaaaagttgttttcttct
actgttattcctaataggggggcatggttagagtatgaaacagattccaatgacataata
tatgtaagaatagataagactagaaaacttcctataactattttagctagagcaatgggt
tatggtacagatgctgaagttacggagttttttggagaagatgaaagacttaaggctact
attgaaaaagataatactaaaactaaagaagaagctttacttgaaatatataagaggttg
agaccaggagaaccacctactgtagacagtgcacagtcgcttattgattcactgtttttc
gatgcaaagagatatgacctttcaagagttggaagatataaatttaataaaaagctagcg
atatatcttagaattgtcaatcaaatagcagcaagtgatgtagtaaacccagtaacagga
gaaatattagttcaaaaaggtgaacgaatagatagggaaagggcagtagaaatacagcaa
agtggaataaatatagtagacattcaactagaagatacagttttaagggttataggcaac
aattttgttaatatacataattttgttgactttaatatagatgatttgcacataaaagag
aatgtttattatcctgttttaaaagaaatattggataattacagtgatgaagagagtatt
aaagatcaaataagaaagcatatgcatgaactgattccaaaacatatattgaaagatgac
atatacgctactataagttatgaacttggtttatcatacaatgtaggccatacagatgat
atagaccatcttggaaatagaagacttagatctgtaggagaattattgcagaatcaattc
aggataggtttgtctagaatggagagagtagttaaggagagaatgactatacaagatcaa
gaagttataactcctcaagctcttataaatataagaccagtggcagcatcaataaaagaa
tttttcggaagttcacaactttcacaatttatggatcaaactaacccactttcggaactt
acacataaaagaagattatctgctcttggaactggaggactttcaagggagagagctgga
tttgaagttagggatgttcataattcccattatggtagaatgtgtcctatagagacacca
gaaggaccaaacataggacttattaattcacttgcaagttatgcaaaagttaatgaatac
ggatttattgaggcaccctatagaaaagtagataaatctaagggaaaagttactgatgaa
attgtgtatatgactgcagatgaagaagatgaatatctcataggtcaagctaatgaacca
ctggatgaagaaggtaggttcatagacagtaaagttactgttagagataaaggtgaagtt
attgttgtaccttctgaagatgttgattttatagatatttcggcaaggcagatagtatca
gttgcaactgcaatgataccttttcttgaaaatgatgatgccagtcgtgcactcatggga
tcaaatatgcaaagacaggcagttccacttttgaaaccacaagctcctattgtaggcaca
ggaatagaatataaagctgccgtagattcaggggttttaccaaaggctagaaatgcaggt
actgttgtatatgtaagtgctaatgaaattagaattaagagagattcagatggtgggata
gatacttatatgttaactaaatttaagagatccaaccaaggtacttgcataaaccaaaga
cctatagtagaaaagggcgaaaaagttttaaaaagatctgttattgcagatgggccttct
acggatttaggggaaatagcattaggtaaaaatataagaatgggctttactacttgggaa
ggatataattatgaagatgctatgcttatatccgaagaacttgtaaaagaagatgtgttt
acatcaattcatattgaggaatatgaatcagaagctagagatacaaaacttggacctgaa
gagattactagagatataccaaatgtaggagaagatgcacttaaagacatagatgaacga
ggaataataagaataggtgcagaagtaagagcgggtgatatactagttggaaaagtcact
ccaaagggtgaaactgaacttacagcagaggaaaggcttttaagagccatatttggagag
aaagccagggaagtaagagatacttcacttagagtacctcatggtgaatatggaataatc
gttgatgtaagggtatttactagggaaaatggagatgaacttccaccaggtgtaaataag
ttagtaagatgttatatagctcagaagagaaagatatctgtaggggataaaatgtcagga
aggcatggtaacaagggtgttatttcaagagtacttcctgaagaggatatgccattttta
cccgatggcagaccactgcaaatatgtttaaatccacttggagtaccttctcgtatgaat
ataggtcaggtacttgaggtccatttaggatgggctgctagcaaattaggatggcatgta
gcaacaccagtatttgatggagctagagaggaagatattttagagtgtcttgaaaaagca
ggctataaaagtcatggaaaaactgtactgtatgatggaagaacaggagaaccatttgat
aatcttgtaactgtaggttatatgtatatattaaaactagcacatttggttgatgataaa
atacatgctagatcaacaggcccatattcacttgtaactcagcaacctcttggaggtaaa
gcacaatttggtggtcaaagatttggagagatggaagtatgggcattatatgcttatgga
gcagcacatactctacaagaagtaatgaccgttaaatcagatgatgttgtaggaagagta
aaaacttatgaagctattgtaaagggtgaaaatatacctgaacctggtatgcctgaatct
tttaaagttcttataaaagaacttcaagcactttgcttagatgtaaaagtattgaatgac
aaaaatgaagaaataaaacttagagaatcaatggatgatgatgtggaagatttaggcgtt
aatatagagggaaatgaagacgcgtctgcacaaattcaaaataataaaaaagaatattta
actaaacattcggacagcaataaggacaataacgagaataatggcaaagaaaatgaagat
tctgatggcaatttaactttggatgatttacaggctgatttagacatagatgatttcagc
gatgaacattag
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integrated database retrieval system
