Cuculus canorus (common cuckoo): 104054530
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Entry
104054530 CDS
T08597
Name
(RefSeq) sodium channel protein type 3 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cuca04040
]
104054530
Ion channels [BR:
cuca04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104054530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQCJ-SCHIP1
ATP-synt_B
IQ
FraC
Motif
Other DBs
NCBI-GeneID:
104054530
NCBI-ProteinID:
XP_053925938
LinkDB
All DBs
Position
6:complement(20210232..20286627)
Genome browser
AA seq
2011 aa
AA seq
DB search
MAQALLVPPGPESFRYFTRDSLAAIEKRSAEEKAKNPKQEHTDDDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPIRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNITFETTVISYFNSTM
DENGTFVNMTVSTFNWKDYIEDETHFYILEGQRDPLLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQATAAVAAASVASRDFSGVG
GLGELLESSSEASKLSSKSAKERRNRRKKRRQKEISEAEGKGDIDKFPKSESEDSIRRKS
FRFSTEGSQLTYEKRFTSPHQSLLSIRGSLFSPRRNSKTSIFSFRGRAKDIGSENDFADD
EHSTLEDNESRRDSLFVPNRHGERRNSNISQTSVSSRMVPALPVNGKMHSTVDCNGVVSL
VGGPSTLTSPTGQLMPEGTTTETEIRKRRLSSYQISMEMLEDSAARQRAMSIASILTNTM
EELEESRQKCPPCWYRFANTFLIWDCWSPWLKVKHVVNLVVMDPFVDLAITICIVLNTLF
MAMEHYPMTEQFSSVLSVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGIIVSLSL
MELGLSNVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKECVCKISSDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QTMCLIVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVARIQKGID
YVKKKIREFIQKAFVRKKKALEEIKALEELNHKKDSCISNHTAVEISKDLNYLKDGNGTT
SGVGTGSSVEKYVIDENDYMSFINNPGLTVTVPIAVGESDFENLNTEEFSSESDMEESKQ
KLNASSSSEGSTVDIAPPGEGEQAEIESEEALEPEACFTEGCVQKFPCCQVSIEDGKGKI
WWNLRKTCYSIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIF
ILEMLLKWVAYGFQIYFTNAWCWLDFLIVDVSLVSLIANALGYSELGAIKSLRTLRALRP
LRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGE
MFDVSDVNNFTQCEELIKNNQSARWKNVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVD
SREVKDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEE
QKKYYNAMKKLGSKKPQKPIPRPVNKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETD
DQSKEMEAILSWINLVFIILFTGEFVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAE
MIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFI
YAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGEPDCDP
HKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSED
DFEMFYEVWEKFDPDATQFIEYSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMVSGDRIH
CLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEVSALIIQ
RAFRRHLLRQKVKKVSSIYNRNKNKEGDRPIIKEIIIDKLNGNSTPEKTDESSSTTSPPS
YDSVTKPEKEKYEKDKAEKNFKGKDVREKKK
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcactgctggtaccaccaggacctgaaagcttccgctattttactagagat
tctctcgcagctattgaaaagcgttctgcagaagaaaaagctaaaaaccccaagcaagaa
catacagatgatgatgatgaaaatggtccaaaaccaaacagtgacttggaggcaggcaag
acactgccatttatttacggtgacatacctccagggatggtttctgaacctttggaagac
ctggacccatactatatcaataaaaaaactttcatagtattgaataagggaaaggcaatt
ttccgattcagcgccacgtctgccttgtacattttaactccttttaatcccatcagaaaa
attgctatcaaaattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtac
actttcactggaatttatacttttgaatcgcttatcaaaattcttgcaaggggcttctgc
ttagaaggttttacttttctgcgagacccatggaactggcttgacttcagtgtcatttta
atggcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcctaaagactattgtaggagcc
ctaattcagtctgtgaagaagctctcggacgttatgatcctgactgtgttttgtctgagt
gtatttgcactaatagggctgcagctgttcatgggaaatttgaggaataaatgcctgcag
tggcctccagataatattacttttgaaacaactgttatttcctactttaatagcacaatg
gatgaaaatggtacatttgttaacatgacagtgagcacatttaactggaaggattacatt
gaagatgaaactcatttttacattttggaaggacaaagagatcccctactttgtggaaat
agctctgatgcagggcagtgtccagagggatatatatgtgtgaaagctggtagaaacccc
aactatggttacacaagttttgacaccttcagttgggcttttttgtcactctttcggcta
atgactcaggacttctgggaaaacctgtatcagctgacactacgtgctgctgggaaaaca
tacatgatattttttgttctggtgatttttctgggctctttctatctgatcaacttgatc
ctggccgtcgtcgccatggcctacgaagaacaaaatcaagcaaccatggaagaagcagag
cagaaagaggcagaatttcaacagatgctggaacaactgaagaagcaacaagaagaagct
caggcaacagcagcagtagcagcagcgtcagttgcatcaagagatttcagtggtgtaggg
ggattaggagaactcttggaaagttcttcagaagcatcaaagttgagctcaaagagtgct
aaagaaagaagaaacagaaggaagaaaagaagacagaaagaaatatctgaagcagaaggc
aaaggagatatcgataaattccccaagtccgagtcagaagacagtatcagaaggaaaagt
ttccgcttttccacagaaggaagtcaactgacatatgaaaaaaggttcacatctccccac
cagtctttgctgagcattcgtggttccctgttctcaccgaggcgcaacagcaaaacaagc
attttcagtttcagaggtcgtgcaaaggatataggatctgaaaatgactttgctgatgat
gagcacagcactcttgaagacaatgagagcagaagagattctctctttgttccaaatcga
catggagaacggcgcaacagtaatattagtcagacgagtgtgtcatctagaatggtacca
gcacttccagtaaatgggaagatgcacagcactgtggactgcaatggagtagtttccttg
gttggaggaccatcaacgctaacttcacctactggtcaacttatgccggagggcaccact
acagaaacagaaataagaaaaagaagactgagttcttatcaaatttccatggaaatgctg
gaagattctgccgcaagacaaagagcaatgagtatagccagcatacttactaatacaatg
gaagagcttgaagaatcaagacagaaatgcccaccatgctggtacagatttgcaaatact
ttcttgatctgggattgctggagtccatggttaaaagtaaaacacgtcgtaaatttagtt
gtgatggacccatttgttgatctcgctataactatttgcattgttttaaacaccttgttt
atggccatggagcattacccaatgacagaacagtttagcagtgtcctttctgtggggaac
ctggtattcactgggatattcacagcagaaatggttctaaagataattgccatggaccct
tattattatttccaagaaggatggaatatttttgatggtattattgttagccttagttta
atggagcttggtctttcaaatgttgaaggattgtctgttcttcggtcatttagattgctt
cgagttttcaaattggcaaaatcttggccaacactaaatatgctgattaagattattggc
aactcagtgggggctttggggaatctgacgctggtgctggccatcattgtgttcattttc
gctgtggttgggatgcagctgtttgggaaaagctacaaggaatgtgtctgcaagatctct
agtgactgtgagcttccacgctggcacatgcatgactttttccattctttcctgattgtg
tttcgagtcctgtgtggagaatggatagaaacaatgtgggactgcatggaggttgcaggc
caaaccatgtgccttattgttttcatgctggtcatggtgattggaaacctagtggtattg
aacctatttctggccttgctgctgagctcatttagttcagacaaccttgctgctaccgat
gatgataatgaaatgaacaatctacaaattgccgtggcaaggattcagaagggaatagat
tatgttaaaaaaaagatacgggagttcattcaaaaagcctttgttagaaagaagaaagct
ttagaggaaatcaaagcacttgaagagctaaaccacaagaaagacagctgcatttccaat
catactgctgttgaaataagcaaagatctgaattatcttaaagacgggaatggaaccacc
agtggtgtaggcacaggcagcagtgtggaaaaatatgtaatcgatgaaaatgattacatg
tcattcataaacaacccaggcctcacggtgacagtgcccattgctgttggggaatcggat
ttcgaaaatttaaatacagaagaatttagcagtgaatctgatatggaagaaagcaaacag
aaactaaatgcatccagctcatcagaaggcagcacagttgatatcgcccctcctggagag
ggcgagcaagcagaaattgaaagtgaagaagctcttgaaccagaagcctgtttcacagaa
ggttgtgtgcagaagtttccatgttgtcaagtaagtatagaggatggcaaaggaaaaatt
tggtggaacctaagaaaaacctgctacagcatagttgagcacaactggtttgagactttc
attgtcttcatgattctcctcagcagtggagcactagcttttgaagatatatatattgaa
cagcggaaaactatcaagaccatgctggaatatgctgacaaagttttcacatatattttc
attttggaaatgcttttaaaatgggtagcatatggttttcaaatatattttactaatgcc
tggtgctggctggacttcctgattgttgatgtctcattggttagtttaatagccaatgct
ttgggctattctgaactcggtgccattaaatcgcttcggactttaagagctttaagacct
ttaagagccttgtcacgatttgaaggaatgagggtggttgtaaatgcccttgtaggagca
attccatccatcatgaatgtactgctggtttgtcttatattctggctcatcttcagcatc
atgggagtaaatctgtttgctggcaaattctatcactgtgtcaacaccacaactggtgag
atgtttgatgtcagtgatgtcaacaattttactcaatgtgaggaactcataaaaaataat
caaagtgcccgatggaaaaatgtgaaagtaaactttgataatgtaggagctggatacctt
gctctgcttcaagtagctactttcaaaggatggatggatattatgtacgctgctgttgat
tcacgagaagtaaaagatcaacctaaatatgaggacaacttgtatatgtatctttatttt
gtgatctttatcatatttggatcattctttaccttgaaccttttcattggtgtcatcata
gacaactttaaccaacaaaaaaagaagtttggaggtcaggatatatttatgacagaagaa
cagaagaaatattacaatgcaatgaaaaaactgggatccaagaagccacagaaacctata
ccgaggccagtgaacaaattccaaggcatggtctttgattttgtaacaaaacaagtattt
gacatcagcatcatgatacttatctgccttaacatggtcacaatgatggtagaaacagat
gaccagagtaaggaaatggaagcaattttatcctggattaaccttgtgttcattatactt
ttcactggagaatttgtcctgaaattgatttcacttcgtcattactacttcactataggc
tggaatatttttgattttgtggttgtcattctctccatagtaggtatgttcttagctgag
atgattgagaaatattttgtatcccccacactattcagagtcattcgacttgccagaatc
ggtcgaatcctgcgtctcattaaaggcgctaagggaatccgcactctgctttttgctttg
atgatgtctctccctgctttgttcaacatcggtctgctgctgttcctggtcatgtttatc
tatgcgatatttggcatgtccaactttgcctatgttaagagggaagttgggattgatgac
atgttcaactttgaaacgtttggcaacagcatgatctgcctatttcagattaccacatct
gctggctgggatggtttgctagccccaattcttaacagtggggagccagactgtgacccc
cataaagaccatcccggcagctctgtgaaaggcgactgcggtaacccttctgtcgggatt
ttcttctttgtcagctacattatcatatcatttctggtagtggtgaacatgtacattgct
gtgattttggagaacttcagtgttgctactgaagaaagtgctgagcccttgagtgaggat
gactttgagatgttctatgaagtttgggagaaatttgatcccgatgcaacacaattcata
gaatacagtaaactatcagattttgcagcttctttagatcctcctcttcttatagcaaaa
ccaaacaaagtccagctcattgcaatggatctgcccatggtaagcggtgacagaattcac
tgccttgacatcttgtttgctttcacaaagcgtgttttgggggaaagtggggagatggac
gccctcagaatacagatggaagatcggtttatggcagccaatccttcaaaagtctcctat
gaaccaattacaaccacgttaaaacgaaaacaggaggaggtatctgctcttattattcag
cgtgcattcagacgtcatcttttaaggcaaaaagtcaaaaaggtttctagtatatataac
agaaataaaaacaaagaaggagatagaccgattataaaagagataattattgataaacta
aatgggaactccactccagaaaaaacagatgagagttcctctacaacttctccaccttct
tatgacagtgtaacaaagccagaaaaagaaaaatatgaaaaagataaagcagagaagaac
ttcaaaggtaaagatgtcagggaaaaaaaaaaataa
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integrated database retrieval system
