Cuculus canorus (common cuckoo): 104062418
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Entry
104062418 CDS
T08597
Symbol
CNTN1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04514
Cell adhesion molecule (CAM) interaction
cuca04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
104062418 (CNTN1)
04517 IgSF CAM signaling
104062418 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cuca04515
]
104062418 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cuca00537
]
104062418 (CNTN1)
Cell adhesion molecules [BR:
cuca04515
]
Immunoglobulin superfamily
Contactins
104062418 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cuca00537
]
Others
104062418 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_5
Fn3_VIN3
Interfer-bind
Tissue_fac
Ig_Rha78A_N
NDNF
DUF4998
Big_3_4
Motif
Other DBs
NCBI-GeneID:
104062418
NCBI-ProteinID:
XP_053941306
LinkDB
All DBs
Position
1:complement(177865602..178115534)
Genome browser
AA seq
1023 aa
AA seq
DB search
MLASQGIIPFEIITEQKITMWLFIYYLVTPSFIFCLSEEGNKGYGPVFEEQPIDTIYPEE
SSDGQVSMNCRARAIPFPTYRWKLNNWDIDLTKERYSMVGGRLVINNPEKSRDAGKYVCV
VSNIFGTVRSSEATLSFGYLDPFPPEERYEVKVREGVGAVLLCEPPYHYPDDLSYRWLLN
EFPVFITLDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPQSDR
AKVYPADIKVKFKDTYALLGQNVTLECFALGNPVPELRWSKYLEPMPATAEISMSGAVLK
IFNIQYEDEGLYECEAENYKGKDKHQARIYVQASPEWVEHINDTEKDIGSDLYWPCVATG
KPIPTIRWLKNGVSFRKGELRLQSLTFDDAGMYQCIAENTHGIIYANAELKIVASPPTFE
LNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTELLVNGSRIRIWDDGSLEIINITK
LDEGRYTCFAENNRGKANSTGVLEMTEATRITLAPLNVDVTVGENATMQCIASHDPTLDL
TFIWSLNGFVIDFEKEHEHYERNVMIKSNGELLIKNVQLRHAGRYTCTAQTIVDNSSASA
DLVVRGPPGPPGGIRVEEIRDTAVALTWSRGTDNHSPISKYTIQSKTFLSEEWKDAKTEP
SDIEGNMESARVIDLIPWMEYEFRIIATNTLGTGEPSMPSQRIRTEGAPPNVAPSDVGGG
GGSNRELTITWMPLSREYHYGNNFGYIVAFKPFGEKEWRRVTVTNPEIGRYVHKDESMPP
STQYQVKVKAFNNKGDGPFSLTAVIYSAQDAPTEIPTDVSIKVLSSSEMSVSWHHVSDKS
VEGYQIRYWAAHDKEAAAQRVQVSNQEYSTKLENLKPNTRYYVDVSAFNSAGYGPPSRTI
DTVTRKAPPSQRPRIISSVRSGSRYIITWDHVKAKSNESAVEGYKVLYRPDGQHEGKLFS
TGKHTIEVPVPSDGEYVVEVRAHSEGGDGEVAQIKISGATAGVPTLLLVLVVPTLGVLAC
LGF
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgctggcatcgcaaggcataattccttttgagataatcactgaacagaagataaccatg
tggctcttcatctattatctcgttacacccagtttcatattctgcctgtcagaggaagga
aacaaaggttatggacctgtttttgaggagcaacctattgataccatctatccagaagaa
tcttcagatggacaagtttcaatgaactgcagggctcgagcaattccttttcctacttac
aggtggaaactcaacaactgggatattgatttaacaaaggagcgctacagtatggtggga
ggcagacttgttatcaataatccagagaaatcaagggatgctggaaaatatgtctgtgta
gtatcgaatatctttggaactgtcagaagcagtgaagccactctaagttttggatatctg
gatccttttccacctgaagaacgttatgaggttaaagtgcgagaaggtgttggagcagta
cttctttgtgaacccccttaccactacccagatgacctcagttatcgctggcttctaaat
gagttcccagtatttattactttggacaaacgacgatttgtgtcacagacgaatggcaat
ctctacattgcaaatgtagaagcatcagataaaggcaattattcatgttttgtgtccagc
ccttcaataacgaagagtgtattcagtaaatttattccacttattccacagtccgatcgt
gcaaaagtatatcctgctgatatcaaggtgaaattcaaggacacgtatgctctcttgggg
caaaatgtgaccctggagtgttttgctcttgggaatccggttcctgaactcagatggagt
aaatatcttgaacccatgccagccaccgctgagataagcatgtctggtgcagttcttaag
atcttcaatattcaatatgaagatgaaggactttatgagtgtgaagctgaaaactataaa
ggaaaagacaaacatcaagcaagaatttatgtacaagcctctcctgagtgggtagaacat
atcaatgacacagagaaggatataggcagtgacctatattggccttgtgttgctacaggc
aagcctattccaacaatcagatggttgaagaatggtgtctcgttccggaaaggtgaacta
agacttcaaagtctgacctttgacgatgccggcatgtaccaatgtatagcagaaaacacg
catggaattatttatgcaaatgctgaactgaagattgtggcttcacctcccacttttgaa
ctgaaccctatgaagaagaaaatcctagcagctaaaggaggccgtgtaatcattgaatgc
aagcctaaagctgctcctaagccaaagttctcctggagcaaaggaacagaattgctcgta
aatgggagtcgcatacgtatctgggatgatggaagcctggaaattatcaatatcacaaag
ctggatgaaggtcgctacacctgttttgcagaaaataaccgaggaaaagctaatagcact
ggtgttctagaaatgacagaagctacaaggattactttagctccattgaatgttgacgtc
accgttggagagaatgctaccatgcaatgcattgcatcccatgatcccacattagaccta
acatttatatggtctctaaatggctttgtaatagattttgaaaaagagcacgaacattat
gaaaggaacgttatgattaaatccaatggtgagctgctcattaaaaatgttcagctgcgg
catgctgggaggtacacgtgcaccgctcagacaattgtggacaactcctcggcttcagct
gaccttgtggtaagaggtcctccaggccctccaggaggtataagagtagaagaaattaga
gacactgctgtagcacttacttggagtcgtggaacagacaatcatagccctatttctaaa
tacactatccagtcaaaaacctttctatctgaagagtggaaagatgccaaaacagaacca
tcagatatcgaaggaaatatggaatctgctagagtgattgatttaattccatggatggaa
tatgagttccggataatagcaacaaacactttggggacgggagaacctagtatgccatca
cagagaattagaactgaaggcgctcctcctaatgtggctccttctgatgttggaggaggg
ggtggaagcaatcgagagctgacaataacatggatgcctttgtcaagagaataccactat
ggcaataactttggttatatagtggctttcaagccatttggtgagaaagaatggagaaga
gttacagttactaatcctgaaattggccgatatgtccacaaggatgagtcaatgccacct
tcaacccagtatcaagtaaaagtgaaagcttttaacaacaaaggggatggaccattcagt
ctcactgctgtcatttattcagcacaagatgctccaactgaaatacctacagatgtgagc
ataaaagttttgtcatcttctgaaatgtctgtttcttggcaccatgtttctgataaatct
gtggaaggatatcagattcgttactgggctgctcatgataaagaagcagctgcacagcgg
gtacaagtgagcaatcaagaatattcaaccaaactggaaaacctgaagcctaatactcgc
tactacgtagatgtttctgccttcaatagcgcaggctatggacctcccagtagaaccatt
gatactgttacccggaaagcacctccaagccagcgtccaagaattatcagttctgtaaga
tctggttcaaggtacatcatcacctgggatcatgtgaaggcaaagtcaaatgagtctgca
gttgaaggatacaaagtactttatagaccagatggacaacatgaaggcaagttgttttca
actggaaagcacacaatagaggtcccagtccccagtgatggtgaatatgttgttgaggtc
cgagcacacagtgaaggaggagatggagaagtagctcaaataaaaatttcaggtgccact
gctggagtaccaactctgctcctggtcctggtggtgcctaccctgggggttctcgcctgc
ttgggattctga
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