Cuculus canorus (common cuckoo): 104064572
Help
Entry
104064572 CDS
T08597
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
cuca04518
Integrin signaling
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104064572 (COL6A2)
04518 Integrin signaling
104064572 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104064572 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104064572 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cuca04147
]
104064572 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104064572 (COL6A2)
Exosome [BR:
cuca04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104064572 (COL6A2)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104064572 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
104064572 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
104064572
NCBI-ProteinID:
XP_053925604
LinkDB
All DBs
Position
6:35827458..35857525
Genome browser
AA seq
1019 aa
AA seq
DB search
MFREAFFSTLLCVVLVPLHAQLDVDPGEVSPTSCAEKRNCPINVYFIIDTSESVALQTVP
IQSLVDQIKQFIPRFINKLENELYQNQVYITWQFGGLHYSDVVEIYSPLTSSKDIYLPRL
FAINYLGRGTFTDCAISNMTEQIQTQMASGVNFAIVITDGHVTGSPCGGMKMQAEKARDM
GIKLFAVAPSENVYEQGLREIANLPHELYRNNYAITQKDTLEIDENTIDRIIQAMKHEAY
GECYKMSCLEIAGPPGPKGYRGQKGAKGNMGEPGSPGFKGRQGDPGIEGPIGYPGPKGLP
GLKGEKGEIGSDGRRGAPGLAGRNGTDGQKGKLGRIGPPGCKGDPGNKGPDGYPGDAGDQ
GERGDEGIKGDPGRPGRSGPPGPPGEKGSPGLPGNPGAQGPAGIKGTKGETGPPGPKGEP
GRRGDPGTKGSKGTPGAKGEIGDPGPEGPRGLPGEIGSKGARGDQGLPGPRGPPGVVGEP
GKIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFPYPGPRGPQGDKGEKGQPGPKGGRGELG
PKGVQGTKGAKGEPGDPGPGGEPGPRGPAGEPGPEGTPGPSGDPGLTDCDVMTYVRETCG
CCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVVNVVSRLGSIAKDPKSQTGARVGVV
QYSHEGTFEAIKLDDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESKREKA
QVFAVVITDGRYDPRDDDKNLGALCGRDVVVNTIGIGDMFDQPEQSETLVSIACNEPQRV
QKMRLFSDLVAEEFIDKMEDVLCPDPQIVCPELPCQTELAVAQCTQRPVDVVFLLDGSER
IGEQNFNRAHHFVEEVARQLTLARSDSDNMNARIALLQYGSERDQDVVFPLTYNLTEISN
ALAQIKYLDSSSNIGSAIIHAINNIVLSPGNGQRLARRNAELSFVFITDGITGSKNLEEA
INSMKKQDVMPTVVALGSDVDMDVLLKLGLGDRAAIFREKDYDSLSQPSFFDRFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgttccgagaagcctttttttccactctcctttgtgtggttctagttcctctccatgct
cagcttgatgtggatcctggagaagtcagtcctacctcctgtgcagaaaagaggaactgc
cccatcaatgtatactttatcatcgacacctcggagagtgttgctctgcagactgtacct
atccagagcctcgtggatcaaataaagcagttcatccctcggttcatcaataaactggag
aatgagctctaccagaaccaagtctacatcacctggcagtttggtggacttcattactca
gatgtggtggaaatttacagtcctttaacaagcagcaaagacatatacctccctaggctg
tttgcgattaactacctcggccggggtaccttcacggactgcgctatctccaacatgaca
gagcagattcagacccaaatggcctcaggtgtgaacttcgcaatagtcatcactgatggc
catgtcactggcagcccctgcggggggatgaagatgcaggctgagaaggcgcgagacatg
gggatcaagctcttcgcagtggcccccagcgagaatgtctatgagcagggcctgcgggag
atcgccaacctgccgcacgagctctaccgcaacaactacgccatcacacagaaagacacc
ctggagatcgatgagaacaccatcgataggataattcaagctatgaaacacgaagcctac
ggagagtgctacaagatgagctgcctggagattgcaggtccacctggtcccaaaggttat
cgagggcagaagggtgcaaagggaaacatgggtgaaccaggctcccctgggtttaagggt
cggcagggtgacccaggtattgaaggtccaattgggtaccctggtcccaagggtctacca
gggcttaaaggagagaagggcgagattggatctgatgggcggaggggtgcccctggtttg
gcaggcaggaatggcaccgacggacagaagggcaagctggggagaattggaccaccaggc
tgcaagggagaccctggtaacaagggtcccgatggctacccaggagatgcaggagaccaa
ggtgaaagaggagatgaaggcataaagggagatcctggccggcctggtcgtagtggaccc
ccaggacctccaggagaaaagggaagcccgggacttccaggcaaccctggagctcaaggg
cctgctggtattaagggaacaaaaggtgaaacaggacctcctggacccaaaggagagcct
ggtcgacgtggagatccagggacaaaaggcagcaaaggcactcctggggccaaaggagaa
attggagatcctggtccagagggtccacgtggcctgcctggtgagattggaagcaaagga
gcaaggggagatcaaggactgccaggtccccgaggccctccaggtgttgtgggagaacca
ggcaagataggatcacgtggggaccctggtgacttgggtccaagaggtgatgctggacca
ccaggaccgaagggtgacagaggcagacctggctttccctaccctggacccagaggacca
cagggtgacaagggtgaaaaggggcagccagggcccaagggaggaagaggtgaacttgga
ccgaaaggagtgcagggaaccaaaggagcaaagggagaaccgggtgatcctggcccagga
ggtgagcctggaccccgtggtccagctggtgaaccaggccccgaggggacacctggccca
tcaggagatcctggcctgactgactgcgatgtgatgacctacgtgcgagagacgtgcgga
tgctgtgactgcgagaagcgctgtggtgccctggacatcatgtttgtcatagacagctca
gagagtattggctacaccaacttcacactggagaagaattttgttgtcaacgtggtcagc
cggctgggctctattgccaaggaccccaagtcacagacaggtgcccgtgttggtgtggtg
cagtacagtcatgagggaactttcgaagccattaagcttgatgatgagcgcattgattca
ctgtcgagcttcaaggaagcagtgaagcgcctggagtggattgctggaggcacctggaca
ccatctgcccttcagtttgcctacaataagctcatcaaggaaagcaagcgagagaaagcc
caagtgtttgctgtggtaatcactgacggacgctacgacccccgggacgatgataagaac
ttaggggctctttgtggtagagatgtagttgtcaacacgattggcattggagacatgttt
gatcagccagaacagagcgagaccctggtctccattgcctgcaatgaaccccagcgagtc
cagaagatgagactcttctcagatttggtggcagaggaattcattgacaagatggaggat
gtgctctgcccagatccgcagatcgtctgtcctgagctgccctgtcagacagagcttgca
gtggcccaatgcacccagcgccccgttgacgttgtgttcttgcttgatggctctgaaagg
attggggagcagaatttcaacagggcccaccactttgtggaggaagtggcccgacagctc
acgctggccaggagtgacagcgacaacatgaatgcccggattgcgctgctgcagtacggc
agtgagagggaccaggatgtagtcttcccactgacctacaacctgacagaaatctctaat
gccctggcacagatcaagtacctggactcatcctccaacattgggtcagccattatacac
gccatcaacaacatcgtgctcagcccgggaaacgggcagcgactcgcccgacgcaatgct
gagctctcattcgtcttcatcactgacggcattacaggaagcaagaacctcgaggaggcc
atcaactctatgaagaagcaagatgtcatgcccactgttgtggctcttgggagtgacgta
gacatggatgtcctgctgaagcttggcctcggggaccgggcagccatcttccgggagaag
gactatgatagcctctcccagcctagcttctttgacaggtttattaggtggatatgttaa
DBGET
integrated database retrieval system
