Cuculus canorus (common cuckoo): 104066337
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Entry
104066337 CDS
T08597
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104066337 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104066337 (SF3B1)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104066337 (SF3B1)
Spliceosome [BR:
cuca03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104066337 (SF3B1)
Complex B
104066337 (SF3B1)
Complex C
U2 SnRNP specific factors
104066337 (SF3B1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104066337 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
104066337
NCBI-ProteinID:
XP_053926176
LinkDB
All DBs
Position
6:31307865..31331904
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcccaaggagtaggccttgattccacaggatattatgac
caagaaatttatggtggcagtgacagcaggtttgctggatatgtcacctctattgcagca
actgaattggaagatgatgatgatgactacccttctacaagtctgcttggccagaagaag
ccagggtaccatgctccagtggcattgcttaatgacataccgcagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cataggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagatcctaaaatgaatgccagaacatacatggatgttatgcgtgaacaacattta
acaaaagaagagagggaaattaggcagcaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagctgcatctcagccaccttcaaaacgcaaacgtcgttgggatcag
acagctgatcaaactcctggtgctacacctaaaaaattatccagttgggatcaagcagag
actcctggacatacaccatctctgcggtgggatgaaactccaggccgtgcaaagggtagc
gaaactcctggtgccactcctggctcaaaaatatgggacccaactcccagtcatacacca
gcaggagctgcgacacctggacgggacacgcctggtcacgcaacaccaggccatggaggt
gccacttccagtgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatact
ccgggacatggcagtggatgggctgagacgcctcggacagatagaggtggtgactctatt
ggtgagacaccaaccccaggagcgagtaagagaaagtcccggtgggatgaaactcctgcc
agccagatgggaggcagcactcctgttctgacaccaggcaaaacacccattggtacacca
gctatgaacatggcaactcctacaccaggtcatatcatgagcatgactcctgaacagctg
caggcatggcgctgggaaagggaaattgatgagagaaacagaccactttctgatgaagaa
ctggatgctatgtttccagaaggatataaggttctccccccaccagctggttatgtacct
attcgcactccggctcgtaagctgacagcaactccaacacctttgggtggtatgactgga
ttccacatgcagacagaagaccggactatgaagagtgttaatgaccagccatccggcaat
cttccattcctaaaaccagatgacatccaatactttgataaactgctggttgatgttgat
gagtcaactctgagtcctgaagaacagaaggagagaaaaataatgaaactactgctgaaa
ataaagaatggcacacctcccatgagaaaggctgcattgcgacaaattactgataaagct
cgtgagtttggagcaggaccgttgtttaatcagatcctgcctcttctgatgtcaccaaca
cttgaagatcaggagcgtcacttgcttgtcaaagtcatcgacagaattctttacaaactg
gatgacttggtgcgaccatatgtacacaagatccttgttgtcattgaaccactgctgatt
gacgaagactactatgctagagtagaaggcagagaaattatttcaaacttggctaaggct
gctggtttggcaacaatgatctccacaatgcgacctgatattgataatatggatgaatac
gtccgaaatacaacagctcgagcctttgctgtcgttgcctctgctctgggcattccgtct
ctgctaccattcttgaaggctgtctgtaaaagcaagaagtcctggcaggctaggcatact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcttgcctcatctc
aggagcttggttgaaattattgaacatggtctggtggatgagcagcagaaggttcgcacc
atcagtgctttggctattgctgctttggctgaggcagctactccctatggtattgagtcc
tttgattctgttctgaagcctttatggaagggtatacgtcaacacagaggaaagggtttg
gctgcctttctgaaggctattggttacctgattccactcatggatgctgagtatgcaaac
tattataccagagaagtcatgctaatccttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtattgaaggtggtgaagcagtgctgtggtacagatggtgttgaagca
aactacataaaaacagaaatcttgccaccctttttcaaacacttctggcagcacagaatg
gcattggacagaagaaattacagacagttggttgatacaacagtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgaacag
tacagaaaaatggtgatggaaacaattgagaagataatgggaaatttgggcgcagcagac
attgatcataaactggaagaacaacttattgatggtatcttgtacgcctttcaggaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctgggcaaa
agagttaaaccctacttaccgcagatctgtggtacagttttgtggcgtttgaacaacaaa
tcggctaaagttaggcaacaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtgttgtatgaatacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcacttaaagctattgtgaatgtt
ataggtatgcacaaaatgacaccaccaatcaaagatctgctgccgcggcttacacctatt
ttgaagaacagacacgagaaagtacaggaaaattgtattgatcttgttgggcgcattgca
gacagaggtgcagaatatgtttctgcaagagaatggatgaggatctgttttgaactgctt
gaattattaaaagctcataagaaagccatccgaagagccacagtgaacacttttggttat
atagcgaaagctattggacctcacgatgtattggctacactgctaaataacctgaaagta
caggaaaggcagaacagagtatgtactacagtagcgattgctattgttgctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaagtctctttctttcctgtttgaatacattggagagatggggaaa
gattacatctatgctgttacgccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgccgtggtgcagcatatgtctcttggtgtttatggatttgga
tgtgaagattctcttaatcatttgttaaattatgtgtggcctaatgtgtttgagacgtct
cctcacgtcattcaggcagtgatgggggctctggagggcctcagagttgctattggtccc
tgcaggatgttgcagtattgcttacagggtttgtttcaccctgccaggaaagtcagagac
gtttattggaagatttataactcgatctacatcggatcacaggatgctctgatagcacac
tatccaagaatctataatgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
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integrated database retrieval system
