Cuculus canorus (common cuckoo): 104068333
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Entry
104068333 CDS
T08597
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104068333 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104068333 (CNOT1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104068333 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104068333 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104068333
NCBI-ProteinID:
XP_053934606
LinkDB
All DBs
Position
13:complement(10673807..10730007)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDISIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAALAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPPFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgatccaggagtgtgcattg
ctgattacaaaaccaaactttatctctacgttgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccacttatttgcccaattgagtaaagtcctcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactcttccagctcagat
ctacgaggctttgctgcccagtttatcaaacagaaactcccggatcttttacgatcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatatttcaatagaggtc
ctgcaccttctcctttcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgctgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggcatagcgaaaacaatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcgtgcagttt
ggtgtacgggaagtcacagcggcccaggttgccagggtgttggggatgatggctcggact
cattcgggattgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggaacacaagctcatacctggaatgtggaggtc
ttaatcgatgttcttaaggagctgaatcctagtctggacttcaaagtagtaacctatgaa
ttggaccatccaggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggc
atccagagaggtctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaatcctgacatcttctgt
tttgctgactacccttgtcatactgttgccaccgacatcctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgattgaatctctgttacgactt
gcggaagtgggacagtatgagcaagttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttactgcagatcaacacatcctggcataccttgcgccat
gaacttatctccacactcatgccgattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactgtcacgaatt
ctggatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctcctgaaaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcgtgtcttcaagcttgtgctggg
agtgtttctcaggagctgtcagaaacgattctcaccatggtagccaactgcagtaatgtc
atgaacaaggctagacagccaccacctggagtcatgcccaaaggacgcccacccagtgct
agcagcttggatgccatctctcctgttcagatcgactcgcttgcaggaatggcatctctt
agtttgggtggctcagctgctcctcatacccagagtatgcaaggcttccctccgaacttg
ggctctgcattcagtactcctcagtcacctgcaaaagcattcccccctctttccacccaa
aaccagacaacaggtttcagcggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggcctccctgcggtgaac
aacgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgcatttacaaccatccacca
catccgaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccagc
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctcttcggtgggata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttggatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccgcatcatttgcaggagtacatagaatatggacaacaatccagagat
cctcctgtgaagatgcagggctcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctgctcttgctggccaagtcagcactatagta
accacctcaaccactaccactgttgcaaaaaccattacgatcacccgaccaactggagtc
agcttcaagaaagacgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacggagagaattgtagaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaacaatctgtctcagtcgaatatgacacaaaaggttgaagaattgaaggaa
acggtgaaagaagagtttatgccctgggtatcacagtaccttgtgatgaagagagtcagt
attgagcctaattttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaacatcaaggtgctactgacatcagac
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataaacccatcttgcacacggatttggatgtgaaatcacta
ctactggaagcatacgttaagggacagcaggagttgctttacgtagtgccatttgttgcc
aaagtcttggaatccagtgtcaggagcgtggtcttcaggcctccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagttgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggacgagcagctgtctgctccaaag
aaggacgtgaagcagccggaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagctactgttcctccacagcctcagtacagttatcac
gacatcaatgtatattctttagggggattggctccacatattaccttaaatccaacgatt
ccactgttccaagcccacccgcagttgaagcagtgtgtgcggcaggcgatagagagagca
gtgcaagagcttgtccatccagtggttgatcggtcaattaagattgccatgactacgtgt
gagcagatagtcaggaaggacttcgcactggattcagaggagtcacgaatgcgtgtggcc
gcacaccacatgatgcggaacctgactgctgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaacagttttgcaactgcactgagggcagcc
tccccacaacagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagctagcatgctgctttatccagaagacagcagtggagaaggcaggccccgagatggac
aagaggctcgcaactgaatttgagcttagaaaacacgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtacct
ggcttcttgcctaccaatgacttaactcagcccacaggattcttggcgcagcctatgaag
caggcgtgggccacagatgacgtagcacaaatctatgacaaatgtatgacagaactggag
cagcacctgcagtccattccacacaccctggccatgaatcctcaagctcaagcattgcgc
agcctcttggaggctgtggtagtggctcgtaactcccgcgatgctattgctgcacttgga
ctattgcagaaggctgtagagggcttactggatgccaccagtggggcagacgctgacctt
ctgcttcgctatcgtgagtgtcatctgcttgtgctgaaggctctgcaggacggccgtgcg
tatggatctccctggtgtaataaacaaattactaggtgcctaattgaatgtagagacgag
tacaagtacaatgtggaagctgtggagctgctaatccgcaatcacctcgttaacatgcag
cagtatgatcttcacttggctcagtcaatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtgaagatcctgttggtggatgaaagaagtgtcgcccatgtaacg
gaggcagatctgtttcacaccattgagacactcatgaggattaatgctcattccagagga
aatgccccagaaggattaccccagttgatggaagtggtccgatcaaactacgaagcaatg
atagaccgtgctcatggaggtcccaatttcatgatgcattcaggaatttcccaagcctca
gagtatgatgatccaccaggtctgagggagaaggcggaatacctgctgagggaatgggtc
aacctctaccattcagctgcagcgggccgtgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccagcaaggaatcctgaaaacggatgacctgatcacccgctttttccgt
ctttgcactgaaatgtgtgttgaaatcagctatcgcgctcaggccgagcaacagcataat
cctgctgccaaccccactatgattcgagccaagtgctaccacaatctggatgcctttgtg
cgacttattgcactgctagtgaagcactctggagaggcaaccaacacagttacaaagatc
aacctgctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgtt
cggcagagtgagtttcagcagcttccttaccatcgcattttcatcatgttactgttggaa
ttaaatgctcctgagcatgtgctggagaccatcaacttccagacacttacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggt
tggcctatgtatgcccagttactgatcgatcttttcaagtacttggctcctttccttaga
aatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttgctg
gtcttgttgcatgatttcccggaatttctttgtgactaccattatgggttctgtgatgtg
atcccacctaattgtattcagctaaggaatctgatcctgagtgcctttccacggaacatg
aggcttccagaccctttcacccccaatctaaaggtggacatgttaagtgagattaacatt
gctccacgaatactcacgaatttcactggagtgatgccacctccattcaagaaagacttg
gattcctatctcaaaacccgttctccagtcacttttttgtctgacttgcgcagcaaccta
caagtatcaaatgaacctggcaaccgctacaacatccagctgattaatgcactggtgctc
tacgtaggtactcaagctattgcgcacattcacaacaaaggcagcacaccatctatgagc
accattacccactcagctcacatggacatcttccagaatttggcagtagacctggacact
gaaggccggtacctgttcttgaatgcaattgccaatcagctgcgatatccaaacagtcac
acccactacttcagctgcaccatgctgtacctcttcgcagaggccaacaccgaggccatc
caggagcagatcacgagggttctcttggaacgacttattgtaaataggcctcatccctgg
ggtctccttatcactttcattgagctgataaaaaatccagcgtttaagttctggaaccat
gagtttgttcactgcgctccagaaattgagaagttgttccagtcagttgcacagtgctgc
atggggcagaagcaggcccagcaagtaatggaagggactggtgccagttag
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integrated database retrieval system
