Cebidichthys violaceus (monkeyface prickleback): 137878079
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Entry
137878079 CDS
T10484
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03013
Nucleocytoplasmic transport
cve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137878079 (upf3a)
03015 mRNA surveillance pathway
137878079 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cve03019
]
137878079 (upf3a)
Messenger RNA biogenesis [BR:
cve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137878079 (upf3a)
mRNA cycle factors
P-body specific factors
137878079 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
137878079
NCBI-ProteinID:
XP_068574298
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MRSEKDQMTAGKEKSVVEIQFRDVPREQENVPGNLKQKEEKKEVFTKVVIRRLPPNLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYVNFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQRKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDFGETDRCKWEKAGGQTKSK
DPKEKGPPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHQQGYSYCPDGGDKLGKEDREDLGSRKERLRNKVSEKMVIISSEKSCFLKLS
DRPAMQLYQPGARNRKRMSSAGKGYDCIPAGHSPEPGAEHCYEAVAMATGLEKGFEKSKD
EQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgcgggcaaggagaaaagcgtcgtggagattcag
ttcagagacgtcccgagggagcaggagaacgttcccggcaacctgaagcagaaagaagag
aagaaagaggtcttcaccaaggtggtgatccggaggcttccacccaacctgtcgaaggag
cagctggaggagcagctcagtccgctcccatcctatgactattttgagttctttccagcc
gatcaaagtctttacccccacctgttctccagagcgtatgtcaatttcaaaaaccctgaa
gatatcctcctgttcagggaccgctttgacggctacgtcttcatcgacaacaagggccag
gagtatcctgccgtggtggagttcgcccccttccagaaaatctccaagaagaagctgaaa
aagaaagatgccaaagccgggagcattgaagaagacccagagtacaagcggttcttggag
aattactcctgtgatgaggagaagtctatggccaacccggagactctgctgggagagata
gaggccaagaccagagagctcatagccaaacggacaacgcccctgttggagtacatcaaa
aataagaaaattgagaaacagaggatacgagaggagaagagggaggagaggagaaggagg
gagctggaaaagaaacgacaaagggaggaggagaagaggaagcggcgggaggaggagaga
cgcaagcggaaggaggcggagaagcagaggaaattgtccgataaagacatcaaaatcaag
ctcctgaagaagagcgacagggacgacgacgtggattcagaccgaatgaaggacaaaagt
gacttcggggagacggacagatgcaaatgggagaaagctggaggacaaacgaagtccaag
gaccccaaagaaaaggggccgcctgagagcgacaaggagcagagagagcagcacggccgc
agacagagggacaaggatcaccgggggaaggacgaggagaggaaacggcagcggcaccac
tacgagtttgacaagttcatgcgtcgcaaagacgagaccaaatgggggaagggctactgc
caggaccgagccaagaaagaggggcaccagcaaggctattcctactgccccgacggggga
gacaaactgggaaaggaggacagggaggacctgggtagcaggaaagaacgcctccgaaac
aaggtgagcgagaagatggtaatcatcagctccgagaaatcttgtttcttaaaactttcg
gaccgtccagccatgcagctctatcagcccggcgcacgcaacaggaagcgcatgagctca
gctggcaaaggctacgactgcatccccgcgggccactcccccgaaccgggggcggagcac
tgctacgaggcggtcgcgatggcaacgggcctggagaaggggttcgagaaaagcaaagat
gaacagtga
DBGET
integrated database retrieval system
