Cyprinodon variegatus (sheepshead minnow): 107084384
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Entry
107084384 CDS
T06110
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD7-like
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107084384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107084384
03016 Transfer RNA biogenesis [BR:
cvg03016
]
107084384
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
107084384
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107084384
Transfer RNA biogenesis [BR:
cvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107084384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
TUTase
Motif
Other DBs
NCBI-GeneID:
107084384
NCBI-ProteinID:
XP_015229681
LinkDB
All DBs
Position
Unknown
AA seq
783 aa
AA seq
DB search
MDNGTAWIQPEQKGLANYSMWMQLWETSHANAGLQPHHQRNFAVQNTNLDSYGESYRHLA
PTPGTAFGKLPRADGGGERGSVRRKGSLSPSSSSLDSEADSSSPHGSLLQIDNLNAADEA
EQFLHNGEQKVKENNLRQPLHVQQHCRSKQPPGGHTPTGMKNQQQQHYQPHHSGRRRQLN
RANTFHGFNPLLSYCFNGLDSSYSLWKTRRYSPGVNGLHEEIMDFFSFMSPRPEEEAMRR
DVVNRIESVIKDLWPTARVEIFGSFSTGLYLPTSDIDLVVFGKWDHPPLQDLEQALKKHN
VAGSYPIKVLDKASVPIIKLTDHETKVKVDISFNVETAVKAAQFIKSYLKRYTVLPPLIF
VLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDTRRSNINLGILLIEFFELYGR
DFNYMKTGIRVRNGGAYLSKEEMLKAMGHGNRPSMLCIEDPVQPGNDVGRSSYGVLQVKQ
VFDFAYLVLSHGLSPLCAYPNREYDSTLGRIVKVSPEVLAYREWIIKTWGAKQSAKLENN
DVETCEQELSRMMLIEDQRDSPSPLSSDSPSPVFPPSPQHHSSSSSACSLSSSSSGSDIE
SDSPKSSNGSIQLHPLNLALIQMAADPGATHPASFIHAPHQISLPENFTILPSDSQFYHE
NPPSINIVHRHTAQAPQFPRHSKPASPLLTHLHHSQVGGLLRHPYAQRSYSQGSLEPHKF
GSKHNQVGSFQCHNPSQGNLGLQHRFVYQTHMVSCFKNQQQQYNRKAWRRRKKDISPTLN
QSQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggataacggaacggcttggatccagccggagcagaagggactggccaattattccatg
tggatgcagctttgggagacctcacacgctaatgctggcctccagcctcaccaccagcgc
aactttgcggtacaaaacaccaacttggactcttacggcgagagctacaggcatttagct
ccaacacctgggactgcgtttgggaagctgccgcgggcagacggcggcggagagagggga
agtgtccggaggaagggctcgttgtcgccgtcctcttcctctctggactcggaggccgac
agctcctctccccacggctctttgcttcaaattgacaatttgaacgccgcagacgaggcc
gagcagtttttacacaacggtgagcagaaggtgaaggagaacaacctccgacagcctctt
catgttcagcagcactgtcgcagcaagcagccgcccggcggccacacccccaccgggatg
aagaaccagcagcagcagcactatcagccccatcactccggccgcaggaggcagctgaac
agggccaacactttccacggcttcaacccgctcctctcctactgcttcaatggcctggac
tcttcctacagcctgtggaaaaccaggcgatacagcccgggcgttaatggtctgcatgag
gaaataatggacttcttcagcttcatgtcacccagacctgaagaggaggccatgagaagg
gatgttgtgaacagaattgaaagtgtcatcaaggatttgtggcccactgctcgggtggaa
atctttggcagcttcagcacaggactatatcttcctacaagtgacatcgatctagttgtg
tttgggaagtgggatcatcccccattgcaggatctggagcaagccctgaagaaacacaat
gtggctggcagctatccaatcaaagtcctcgacaaagcttctgttccaatcattaaactc
accgatcatgagaccaaagtgaaagttgacatcagcttcaatgtggagactgctgtgaaa
gctgcccagttcattaaaagctaccttaagagatacactgttcttccaccattgatcttc
gtcctgaagcagtttctgttgcagagagatctaaatgaagtctttactggaggcatcagc
tcatatagccttatactaatggctatcagcttcttgcagttacaccctaggattgacaca
cggcgctccaacataaacctgggcattctgctgatagagttctttgagctttatggtcgc
gattttaactacatgaaaacgggaatccgggtgagaaatggaggagcttacctgtccaaa
gaagagatgctgaaagccatgggccatggaaaccggccctccatgctctgcatagaggat
cctgtacagccaggaaacgatgttggaaggagttcatatggagtcctgcaagtcaagcag
gtctttgattttgcatatcttgttttaagccatggtttatctcctctttgtgcatatcca
aacagagagtatgacagcactttaggacggatcgttaaagtcagcccagaggtgttggcc
tacagggaatggataatcaagacgtggggtgccaaacagagtgccaagctggaaaacaat
gatgtggagacctgtgagcaggagctttctagaatgatgctgattgaggatcaaagggat
tccccgtctcccctgagctcagactccccttctccagtgtttcctccaagcccgcaacat
cattcctcgtcttcctcagcttgctcactttcttcatcttcctctggaagcgacattgag
tctgactctccaaaaagtagcaatggttctatccagctccacccgctaaacttggcttta
atccagatggctgcagacccaggggccacacatccagcaagctttatccacgctccacat
cagatctctcttccagaaaactttaccatcctgccgtccgatagccagttctaccacgag
aaccctccttctattaacattgtgcaccgtcacacagcacaagctccacaattcccccgg
cattctaagcctgccagccctctccttacacatctccaccactctcaggttggagggctg
ctgcgccacccgtacgcccagagatcttattcccaaggctcactggagccccacaagttt
ggctccaagcacaaccaagttggtagcttccagtgccataatccctctcaaggcaacttg
ggtctgcagcaccggtttgtttaccagacgcacatggtgtcatgtttcaaaaaccagcag
cagcagtacaaccgtaaggcttggcgacgcaggaagaaagacattagtcccactttgaac
cagagccaatga
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