Cyprinodon variegatus (sheepshead minnow): 107092858
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Entry
107092858 CDS
T06110
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107092858
04518 Integrin signaling
107092858
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107092858
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107092858
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107092858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
Fn3_VIN3
NDNF
DUF7949
EGF
DUF4998
hEGF
TSC22
Motif
Other DBs
NCBI-GeneID:
107092858
NCBI-ProteinID:
XP_015243022
Ensembl:
ENSCVAG00000002557
LinkDB
All DBs
Position
Unknown
AA seq
2369 aa
AA seq
DB search
MGTHSLLGFLLLITLISLTNAGFVKKILRHKRQTLSPPSEHNVTFPSADHPVVFSHVYNI
NVPESSLCSVDLESPEGAHVHSKDIAAVPQGHHVTEHTFNGENQILFTHRINIPRQACGC
KDDFPGLKELMSRLEMLEGEVSALRDQCSSEQLTGELGTKPYCNGHGKYSTETCACICDP
GWRGPNCTEGECPTSCQDRGRCVDGKCECYKGFTGEDCALKTCPMDCGAHGICEREVCVC
SDGFFGEDCSESRCLNNCLGRGRCDEGDCICDEPWTGLDCSELICPNDCYDRGRCVNGTC
YCDEGFSGEDCADFSCPNNCRGNGFCVDGKCICTVGYSGQDCSQLTCLNDCNDRGRCFNG
VCICDSGYQGEDCSQVACVNNCHNRGQCINGRCSCDAGFHGDDCSELSCPNNCQLKGRCV
NGQCVCDEGFAGEDCSIHTCPSNCYGRGECIEGRCACHVGYVGEDCSQLSCPNNCNNRGR
CIDGQCVCDEGFSGEDCSQKACLNDCLARGYCIDGKCFCHEGYTGESCSILACPENCNNR
GRCVNGRCTCDSGYEGESCADLSCINNCQDKGRCVNGQCFCDEGYIGEDCSEVSPPKDLT
VGEVSTETVDLSWNNEMLVTEYLITYVPTSPGGLLMEFTVPGDKNAATVKELEPGIEYLI
SVYAVLSNKRSIPVSARVATDLPQPEGVRFKSVRETSVEVVWDQLDISFDSWEIYFRNTK
EENGKVVSTLPPSQNEFLQSGLGPGQEYEVSINVVKNNTRGPQTSRTVTTKIDGPRQVEV
KDVTDSSALISWYLPVAPADGVTIFYMPSSNHSDETTVDVSPSDKQYSIDNLKPDTEYAV
SIISRHKEATSDPVTTIFTTELDAPTAAQAVSQTDDSITLEWTNSQADVSSYRVKYTPIS
GSSHGERVFPRGSGRTTQATITGLKPGTEYGVGVTAVKHERESLPATTNAATELDPPRDF
KQIRSTETSLSVSWQKPQAKLSGYRLEYMSRDGQAEQVDIPASANTFVLSDLIPGMSYTM
TLTAERGHKRSRPVSLTASTATLTFYLAASDDHEIRTPPGSEDIVSSSVILDTPESQIFE
TEPEDKHGKLTISAVASDGFDLASKLKIHRANDDVAAKYKDTQKWLDGREVQFPADSDGA
RISVLKPYQTELFEIKSSQASSIHEAVAGTAPPDVLALSIKEAPTTAISAQDEENHKHGY
DISSEAPSDNEEMISGAEPESSGMELLSNLTPVNVTATSMSLVWSAPDEAFDSFLVELVA
PSAAAAQPRVTTIPGGLRKAKIEGLLPSTLYEITLHGLMEGTPSLPLRVFTTTAGLEPTL
GNLIISDITWDSFVASWNPTGEDFNSFVIEVTNMDDLAEAQNLTLSGDATSLLISGLNPN
TSYMVGLYGTHQGSFLEPLYSEATTVIQPVVGKLFASNFTPESFTIHWNNTEKLFDGFVL
EIIDSDWLMELMEYNISRNVTSKDVTGLRPSTDYIAYLYGTYKGSRTGAVSTVASTAEEP
DLSKLVVSNITSDRFSLSWRTGEKEFDTFIVEVRESALPSQAMGRTLPGDARSTVMAGLR
ANTSYNIKLYASEGGRQSTQPLLAVATTEEVPLLGPIFASSANPHYLSLHWNTLSGSFDG
FVLQVSDSEQQSDTLEFRLPGEARNFTIPNLMDDTGYDIELYGISHGRRTPSVYVHALTA
PLPKVENLTISNVTPYGFRVSWEVKQHPLHQEDISPSGGGFSHFHIVVTDSGWLLEPQEF
TVPGDQSHLDIWGLITGIGYEVKLTGVSESGLLSRPLTTVAVTEAEPEVEHLFISDITSH
SFRLSWAADEDQFDRFVIKIRDSKRLAHPREYKARGSERTKVITGLMSGTEYEIELYGLT
LDQRSQPITAVAQTGLSAPKGLHFTEVTDSSAVVHWSNPRSQVDSYRITYVPFEGGSPLI
LNADGSMSEMLLINMFPGKTYQVTVSSLKGLEESEPSTGTVTTALDSPRGVTAVNVTDTS
ALLSWQPSVATVDGYVITYSTDTVSPVVEHVSGNIVEFQINTLVPGSHYTAAVYGVKEAQ
RSESTLTAFTTDLDPPRDLMANNVQTDTATLTWKPPTAAVTGYMLSFSSPGGVIREVMLS
PTASSYSMSQLTGSTKYDVRLQAISGAQRSRYVTTTFSTNKVGQLYARPWDCAQILLNGE
TTSGLYTIYIGGEESQPIQVYCDMTTDGGGWMVFLRRQNGKLEFFRNWKNYTAGFGNMND
EFWLGLSSLHKITSLGHYELRVDLRDNEESAYAQYDKFTIAEPRTRYKVYLGAYSGTAGD
SMSYHQGRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDSSHSKGINWFHW
KGHEHSIEFAEMKIRPANFKNPESRKKSS
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atgggcacacacagtcttctaggcttccttcttctgattactttgattagtttaacaaat
gctggatttgtcaagaaaatcctccgccataaacgacagactctttctcccccttcagaa
cacaatgtgacctttccgagtgcagaccatccagtggttttcagtcatgtttataatatc
aacgttcctgaaagttccctgtgctctgtagacctggagtcacctgagggtgcacacgtc
cattctaaagacatagcagcagttccacagggccaccatgtcactgaacatacctttaat
ggggaaaaccagattttattcacccatcgcatcaacatacctcggcaggcctgcggttgt
aaagatgactttccaggcctgaaagagctcatgagccgtctggagatgcttgaaggagaa
gtttcagctttgagggatcaatgcagcagtgaacagcttacaggagagttaggaacgaaa
ccatactgtaacggccatggaaagtacagcactgaaacatgcgcctgcatatgtgatcct
ggctggagggggcccaactgcactgagggcgagtgtcccacgagctgccaggaccgtggc
cgctgtgtggatggaaaatgtgaatgttacaagggcttcaccggagaagactgtgccctc
aagacctgcccaatggattgtggagcccatggcatctgcgaaagagaagtttgtgtctgc
tcagatggtttctttggggaagactgctcggaaagtcggtgtttgaacaactgccttggc
cgtggtcgctgcgatgagggagactgcatatgtgatgaaccttggactggcttagactgc
tctgaactcatctgtcccaatgactgctatgaccgaggacgctgtgttaatggcacctgc
tactgtgacgaaggctttagtggggaggattgtgcagatttttcttgccccaataactgc
cgtggcaatggtttctgtgttgatggtaaatgtatttgcactgttggatacagtggacaa
gactgctctcagctcacctgtctgaatgactgtaatgacaggggaaggtgcttcaatgga
gtctgcatctgtgactctgggtaccaaggtgaagactgcagccaggttgcatgtgtgaat
aattgccacaacagaggccagtgcatcaacggaaggtgttcttgtgatgccggctttcat
ggagatgactgctccgaactctcctgtccgaacaactgtcagctgaaggggcgctgtgtt
aatggacagtgcgtttgcgatgaaggctttgcaggtgaagactgcagcatacacacctgt
ccgtcaaactgctatgggcgtggggagtgtattgagggacgctgtgcatgccatgtgggc
tacgttggtgaagactgcagtcagctgagctgcccaaacaactgcaataaccgtggcagg
tgcatcgacgggcaatgtgtgtgcgacgaggggttcagtggggaagactgcagtcagaaa
gcttgtctcaatgactgcctggcaaggggttactgtattgatggcaagtgcttctgtcat
gagggatacacaggagaaagctgctctatcctcgcttgtccagagaactgcaacaacaga
gggcgctgtgtcaatgggaggtgcacatgtgacagtggatatgaaggggagagctgtgca
gacctgagctgcatcaacaactgtcaggacaaaggtcgctgtgtgaatggtcagtgtttc
tgcgatgaggggtacatcggagaagactgttccgaagtgtctcctccaaaggacctgact
gttggcgaagtcagcacagaaactgtggacttgtcctggaacaatgaaatgctggtcact
gagtacctcattacgtacgtccccacgagtccagggggtctcctcatggagttcactgtt
cctggagataaaaacgctgcaaccgttaaagagctggaacctggcattgaatacctgatc
agtgtctatgctgtcctgagcaacaagaggagcattcctgtcagtgcaagagtggccaca
gatctcccacagccagaaggtgtaagattcaaatcagtgagggaaacatctgtagaggtt
gtctgggaccagctggacatttcgtttgacagctgggagatttatttccgcaacacgaaa
gaggaaaatggaaaagttgtgagcactcttccaccttcccaaaacgagtttctccagtct
gggcttggaccaggacaggaatatgaggtctccatcaacgttgtgaagaacaacaccaga
ggaccccaaacatctagaactgtcaccaccaagattgatggcccaaggcaggtggaggtg
aaggatgtcacagactcctcggcgctaatcagctggtatctgccagtggctccagcggat
ggggtcaccattttttacatgcccagctccaaccactcagatgaaaccacagttgacgtc
tctccatcagacaaacaatacagcatagacaacctgaaaccagacacagagtatgctgtg
tcaatcatttcaaggcacaaagaggcgaccagtgaccctgttaccaccatatttacaaca
gaactggatgcccccacagcggcgcaagctgtgtctcaaaccgatgacagcatcactcta
gagtggaccaacagtcaagctgatgtcagcagttaccgagtgaagtacacccccatctct
ggctccagtcatggtgagagagtcttcccacgaggatcaggacgcaccactcaggctacc
atcactgggctgaagccaggcacagagtacggggtgggggtgacagctgtgaagcatgaa
agggagagcctccctgctactacaaatgcagcaactgagctcgaccccccgagggatttc
aaacagatcaggtccaccgagacatccctcagcgtcagctggcagaaacctcaggctaaa
ctcagtggctacaggctggagtacatgtccagagatggtcaggctgaacaggtggacatc
ccagcctctgcaaacacattcgtcctttctgacctgattcctggtatgagctacaccatg
actctgactgcagagagggggcacaagaggagcaggcctgtctccctgacagcatccaca
gccactttaactttttatttagctgcctcggacgaccatgaaataaggactcctccaggc
tcggaggacatcgtcagtagctctgtaattttagacacgcccgagtcccagatctttgag
acggagcctgaggacaagcatggaaagctgactatctcagccgttgcgtcagatgggttt
gacctcgcatcaaagcttaaaattcacagagccaatgatgatgttgctgcaaaatataag
gacactcaaaaatggctggatgggagagaggtccaatttcctgcagattccgacggggct
agaatcagtgtcctgaagccatatcaaactgagttgtttgaaataaagagtagccaggca
tcctcaatccatgaagctgttgcaggaacagcacctccagatgtgcttgccctgagcatc
aaagaagcaccaacaactgcaatctcagctcaggatgaagagaaccataaacatggctac
gatattagcagtgaagcgccctcagataacgaggagatgatctccggggctgagcctgag
agctccggcatggaacttctaagcaaccttaccccggtaaatgttaccgcgacaagcatg
agcctggtgtggtcagcccctgatgaagcgtttgacagctttttggtggagcttgttgct
ccgtcagctgctgcagcgcagcctcgtgtgaccacaatacccggaggtttgaggaaggcc
aaaatagagggtttgttgccctctactctctatgaaataacacttcatgggctgatggaa
gggacgccatctttgcctctcagagtttttactacaacagcgggtttggagccgacgcta
ggaaacctcatcatttctgacattacatgggacagcttcgtagcatcctggaaccctaca
ggggaggactttaacagctttgtcattgaggtaacaaacatggacgatcttgcagaggca
caaaacctcactctatctggggatgctacaagcctgctcatcagcggattaaatcctaat
accagctacatggtgggcttgtatgggacacatcagggttcattcctagaacccctgtac
agtgaagcaacaacagttattcaaccagttgttggcaaactgtttgcctcaaactttaca
cctgaaagctttacgatccactggaacaacactgaaaagctgtttgatggttttgtcctg
gagataattgactcagactggctcatggagctaatggagtataatatatctcgtaatgta
acgtccaaagacgtcacagggctcaggcccagcactgattacatagcctacctctatggg
acgtacaagggatctcggacaggagctgtcagtactgttgcatcaacagctgaggagcct
gatttgtccaagctagttgtttctaacattacctcagacagattctctctgtcatggcga
acaggagagaaggaatttgatacatttatagtcgaagtcagagagtctgctttgccctcg
caggcgatggggcgcactttgccaggagatgctcgctctactgtaatggccgggctcaga
gcaaacacaagctacaacataaagctttacgccagtgaaggtggcagacaaagcacacag
ccactcctggctgtagctacaacagaggaagtgccgctgttggggccgatatttgcttcc
tctgctaacccccattacctcagcttgcattggaatacattgtcgggctcctttgatggc
tttgtcctccaggtcagtgactccgagcagcaatctgatacgctggagttcagactacct
ggtgaagcccgtaactttacaatccctaacctgatggatgacacaggttatgatatcgaa
ctgtacggtatttctcatgggcgtcgcactccctctgtgtacgtccatgctctcacagct
cctttacctaaagtggaaaacttgaccatatccaacgtaaccccctacggtttcagagtg
tcctgggaagtgaagcagcacccactccatcaggaggacatatccccctctggtggtggt
tttagccactttcacattgtggtgacagactcaggctggctgttggagcctcaggaattc
accgtaccaggagaccagagtcacctggacatttggggcctcatcaccggcattggctat
gaggtcaagctaactggggtgtctgagtcgggtcttctttctcggcccttgactacagtg
gcagtgacagaggcagagccggaggtggagcatctcttcatctcggacatcacaagtcat
agtttccggctttcgtgggcggcggacgaggaccagtttgacagatttgtgatcaaaata
agagacagtaaaagattagctcatccgcgggagtacaaagcgcgtggcagtgagaggaca
aaggtcatcactggccttatgagtggcactgaatatgaaatcgagctttacggcctcaca
ttggaccagcgttcccagcctataactgcagttgctcagacaggtctgagtgctccgaaa
ggactgcatttcactgaggtgacggactcttcagctgtggttcactggtccaatccacgc
tctcaggtggatagttacaggatcacctatgtgccctttgaagggggaagcccattgatt
ttgaacgcagatggcagcatgtctgagatgcttctgatcaatatgtttcctggaaagacc
taccaagtgactgtgagttctctgaagggtctggaggaaagcgagcccagtaccggcact
gtaaccacagctctggacagcccccggggtgtgactgcagtaaatgtcacagatacgtca
gctttgctgtcatggcagccatccgtggccacagtcgacggctacgtcatcacctacagt
actgatacagtgtccccagtggtggagcatgtttctgggaacatagtggaattccagata
aacaccttggttccaggatctcattacaccgctgccgtttatggtgtgaaagaagcccag
aggagtgagtccactctgactgcatttaccaccgatttggatcctcctcgtgacttgatg
gctaataatgttcaaactgacaccgccactctgacatggaaaccgcctactgctgcagtc
actggctatatgctaagcttctcctctcctggtggtgtaatcagagaggtgatgctaagc
ccgacagcgtcttcttacagcatgtctcagctaactggctctacgaagtatgatgttcgc
ctccaggccatctccggagctcagaggagtcgctatgtaaccacaaccttttccaccaac
aaggttggacagttgtacgctcgtccctgggactgtgctcagattcttctgaacggggag
accacctctggtctgtacaccatctatataggaggagaggagagccagcccattcaggtt
tactgcgacatgaccacagatggtggaggatggatggttttcctcaggcgccagaacgga
aagctggaattcttcaggaactggaagaattacacagctggctttgggaacatgaatgat
gagttctggctgggtctctcaagcctccataaaatcacatctttaggacattacgagctg
agagtggacttgagagataatgaggaatcggcctacgcgcagtatgacaagttcacaatt
gcagagccgagaacacgatacaaagtctatttaggagcttatagtggaacagcaggtgac
tccatgtcctaccaccagggccggcccttctctacgtatgacaacgataacgatattgct
gtgaccaactgcgccttgtcctacaaaggcgccttctggtataaaaactgccatcgtgta
aacctcatgggaaaatatggtgacagcagtcacagtaaggggataaactggttccattgg
aagggccacgaacactcgattgaatttgcagagatgaagattaggccagcaaacttcaaa
aaccctgagagcagaaaaaagagctcataa
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integrated database retrieval system
