Cyprinodon variegatus (sheepshead minnow): 107098689
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Entry
107098689 CDS
T06110
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107098689
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107098689
09142 Cell motility
04820 Cytoskeleton in muscle cells
107098689
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cvg00535
]
107098689
Proteoglycans [BR:
cvg00535
]
Extracellular matrix (ECM) proteoglycans
Others
107098689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107098689
NCBI-ProteinID:
XP_015251964
Ensembl:
ENSCVAG00000021135
UniProt:
A0A3Q2DH53
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MALFRIHQEGFLVVLLQIALICSAQRGAVGPRGPPGPPGIAGVPGVDGIDGDRGEDSNVT
GPPGIPGDNGKDGSPGASGRPGADGPVGPPGNPGPVGQKGSKGERGARGPAGEPGVGPDG
TDGIPGTDGLPGELGRAGPPGSRGRRGPVGLPGLAGPRGPPAVYQGEDLCPNACPPGLTG
YSGLPGMKGHKGAKGESGEPGRQGHKGVEGDQGPPGEVGAQGLPGPGGKRGAPGIMGPKG
ERGPRGSPGDVGPRGALGAPGDPGQRGGSGESGQIGVQGDRGPPGIRGVPGPKGEPGLPG
PDGREGIPGLPGSKGPPGKSGAPGDAGPQGLPGLPGSYGQKGHSGAKGSTGDRGVVGLMG
SPGKQGERGDQGEVGPAGPRGGNGERGETGPNGPPGIPGARGSKGDPGFPGLPGPAGYRG
QKGDRGSVGLTGPKGDQGPAGAEGTPGDKGEVGDQGEPGEKGSQGPPGETGNKGAEGGRG
LPGKEGKPGQAGPRGMQGDTGVPGLPGHQGPAGKAPTDRHIKQVCMRVMQEQLAQLAASL
SRPESGVAGLPGPPGPPGPPGSPGENGFPGHTGSRGLPGLKGPPGLIGLKGPKGDQGDRG
DRGPTVRGPKGEPGVPGLPGK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggctctcttcaggatccatcaggagggttttctggtggttttactgcagattgcgttg
atttgttccgctcagaggggcgcggttggtcccagaggcccccctggaccgcctgggatc
gctggagtacctggagtggatggaatcgacggtgatagaggggaggactccaatgtaact
ggaccgccgggtattcccggggataatggaaaagacgggtctccaggagcttcaggccgt
ccaggagcagatggaccggtgggacccccagggaatccaggccctgtgggacagaaaggc
tccaaaggggaacgtggagctcggggacctgcaggagaaccaggggtaggacctgatggg
actgatggtattcctggtactgatgggctaccaggtgaactggggagagctggaccccct
ggatcgagagggaggagaggtcccgtcggtctaccaggtcttgctggtcctcggggacct
ccagctgtttaccagggggaggatctgtgcccgaacgcctgccccccaggtctgactgga
tattctggactccctggaatgaaaggccacaaaggggctaagggcgaatcaggtgagccc
ggaagacaaggacacaagggagtggagggcgatcagggaccccccggtgaagttggagct
caaggactgccaggccctggtgggaaaagaggggctccaggaataatgggccccaaagga
gaacgggggcctcgtgggagccccggtgatgtagggcctcggggagctctgggagcacca
ggggatccgggtcaacgaggaggatcaggagagagcggacagataggagtacagggggac
cggggccctccaggaatcaggggcgttccagggccaaaaggagaacctggcctccctggt
ccagatggtcgtgaaggaatacctgggttgcctggttctaagggtcctccaggtaaaagc
ggagctccaggtgatgcaggcccacagggacttcctggtttacccggttcatatggccag
aaaggacacagcggtgcaaagggaagcacaggggacagaggagtcgtgggactgatgggg
tctccaggaaaacaaggggagcgaggagaccagggggaagttggaccggctgggcccaga
ggaggaaatggtgaacgtggagagacaggacctaatggacctcctgggataccaggagcc
aggggaagcaaaggggacccaggctttccagggcttcctggcccggctggttatcgaggc
caaaagggggaccggggttctgttggactcactggccctaaaggagaccagggacctgca
ggcgctgaaggaacccccggagataaaggcgaagtgggcgatcaaggagaaccaggagag
aaaggatcgcaaggaccaccaggagagacgggaaacaaaggagctgaggggggccgtggg
ctgccaggcaaagagggcaagccgggtcaggcaggaccacgaggcatgcagggagataca
ggggtaccgggcctacctgggcaccagggtccagcgggcaaagctccgacggacagacac
atcaaacaggtctgcatgagagtcatgcaagagcagctggcccagttggcagccagcctg
agcagaccagaatccggcgtggccgggctccccggccctcctggcccacctggacctcca
ggctctcccggagagaatggatttccaggccacaccgggtcaagaggtctccctggtttg
aagggtccacctgggttaatcggactcaaaggaccgaaaggtgaccaaggggacagaggg
gacagggggcccacagtgaggggacccaaaggggaacctggcgttcctggtctaccaggt
aaataa
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