Calliphora vicina (urban bluebottle blowfly): 135956269
Help
Entry
135956269 CDS
T10781
Symbol
pcm
Name
(RefSeq) uncharacterized protein pcm
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03008
Ribosome biogenesis in eukaryotes
cvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135956269 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
135956269 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135956269 (pcm)
03009 Ribosome biogenesis [BR:
cvj03009
]
135956269 (pcm)
03016 Transfer RNA biogenesis [BR:
cvj03016
]
135956269 (pcm)
03036 Chromosome and associated proteins [BR:
cvj03036
]
135956269 (pcm)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135956269 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
135956269 (pcm)
Ribosome biogenesis [BR:
cvj03009
]
Eukaryotic type
Pre-60S particles
RNases
135956269 (pcm)
Transfer RNA biogenesis [BR:
cvj03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
135956269 (pcm)
Chromosome and associated proteins [BR:
cvj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
135956269 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
135956269
NCBI-ProteinID:
XP_065362773
LinkDB
All DBs
Position
4:84877527..84897182
Genome browser
AA seq
1489 aa
AA seq
DB search
MGVPKFFRYISERYPCLSELAREQSIPDFDNLYLDMNGIIHNCSHPDDTNIHFNITEEEM
FKDIFNYIDKLFFLIKPQKLFFMAIDGVAPRAKMNQQRSRRFRSAKEAETLEKLANTRGE
VREHERFDSNCITPGTEFMDRLHEGLRYFIKSKISADPLWQKCRVILSGHNSPGEGEHKI
MDYIRYLKSQSDFNPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFGKKTKKASVEE
TRFFLLHLGLMREYLEMEFNEIKQQDPNFDIAKLIDDWVLMGFLVGNDFIPHLPCLHISS
NALPLLYRTYKKIYSSLGGNINENGKLNLERLEKYFAALAEVEFEIFQDNHADLKYFEAK
QSKNGVDEAFDFDVNEINNENTDNDLAALIESSRQFLEDDDEDLSDNDQHINDEFENYKR
NYYMNKLNKDNSNSEHTREQAICYITALQWILDYYYRGVQSWDWYYPHHYAPFISDLKGF
QDYEIKFNMGKPFLPFQQLLAVLPAASRTLLPAAYRDLMTSASSDLIDYYPEDFATDLNG
KQHEWEAVVLIPFIDEKILLEAMAACDQNLMPSERKRNQHGPMLQYDYHPESQGQVAGVY
SLKALYHVFCTEKPFWSQDILVSPQKTVCVELPNAARSVFFPGFPTMKHLNYKFQIKNGR
VKVFDYPSRNENMILQPESRKNMDDVYAVAEKYLNQIIFIGWPHLVRAKVVGVSNKEKYI
DVDGIKDLEPKIFDFHVKTAQEHLSTRMGIEFSDYSVMVHVRTYTGSSYICGSQGKVTNN
EVWSQFTTAYPAQGVVSHIAIHNSVTNQHKKIEQLFPENSKIFFVGNPYYGSEGVVMNPM
LVYECGRLKVNITVLPEPDFSEAKYVQNQLERDYINTYQAAAQIGIHVKSLARITGSVLV
VKGGRRPKADLPDNLPKLNIGLQFKYIKQQEELAGYARRIDNQWFLSTKAIALIQLYVAR
FPVVIEYLSKASDRAELLFEQDLFPLDVGEKKVEEIVSWLKEQDHAKAERVACGSKTMEK
ESVEKILDAIEQLKTLPVKTVKLQVKPHLLLKPDVSLPDVYKAKRSIKLFDRVVIVKTTY
MVPLGSKGTVVGIYPVSDPNPVRLECVKAVDNFYEILFDKHIPNGNDMHGIASQRVYKVP
ESSVLLIFTQDNNRQNDNFYDSKMSCQLEDNKDVSMKSWRRQSNVPTTTNSVNNDSTVTN
AEAVKQQTQVVEKGGDDFWMPAVNTKQKHSNTIKIMQNPNQTLQSNSSNNINQLQHHTTT
ASSVEPQQCNDGTQLLKSLLGLSANQSQVIPGPAVSAKPQLPQPPTSWRTDAQKMPVMPH
NFPRMPLPQNPYMPSNAPLALIGGNVVPLPSTQQMMSQYQQQPHMQFQQGNQTTQQPPHY
QQLAQQQQNVTMPQDKIFSLNSLNQKGAFIPLQVSRGNNSFSNNGQAATTSSNNQIDSPS
TIVQNLNELSLHGIIDGDNIKQETTDIKPSYGRKKPPRVPKIGAKFDKK
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaagtttttccgctacataagtgaacgttatccatgccttagtgaattg
gcaagagagcaatctattccagattttgacaatttatacttggacatgaacggcatcatt
cacaactgttcacatccagatgatactaatattcatttcaacattacagaggaagaaatg
tttaaggatatttttaattatattgataaattattctttctgataaaacctcaaaaactg
ttctttatggcaattgatggcgttgcgccacgtgctaaaatgaatcaacaaagaagtcgt
cgtttccgttcggccaaagaagctgaaacacttgagaagttggccaacacccgtggtgaa
gttagagaacatgaacgttttgacagtaattgcattacaccgggtacggaattcatggat
cgcttacacgagggcttgcgctattttattaaaagtaagataagcgctgatccactttgg
caaaagtgtcgtgttatacttagcggacataattctcctggtgaaggtgaacataaaatt
atggattacatacgctatttgaaatctcaaagtgatttcaatccaaacactcgtcactgc
ctctatggtttggatgctgatttaattatcctgggtctatgtacccatgagcttcatttt
gtggtgttgcgcgaagaagttaaattcggtaagaaaactaagaaggcatctgttgaagaa
acacgatttttcttgttgcacttgggtttaatgcgtgaatatttggaaatggaatttaat
gagataaaacaacaagacccgaatttcgatattgccaaattaatagatgattgggtacta
atgggatttctagtcggtaacgattttataccccatttaccctgtttgcatatttcatcg
aatgctttgcccttgttatatagaacatataaaaagatatatagcagtctgggtggcaac
attaacgaaaacggcaaactaaatttggaacgtttagaaaagtactttgcagctttagcc
gaggtagaatttgaaatatttcaggataatcatgcagatctcaaatattttgaagctaaa
caatcaaagaatggcgttgatgaagcctttgactttgatgtgaatgaaattaataatgaa
aatactgataacgatttggcagctttaattgaaagtagtagacagtttcttgaagatgac
gatgaagacttgtcagataatgatcaacacataaacgatgagtttgaaaactacaaacgt
aattattatatgaacaaattgaacaaggacaattccaacagcgaacatacaagagaacaa
gcgatttgctatataacggcattacaatggatattagactattattatcgtggtgtgcaa
tcatgggattggtattatcctcaccattatgctccctttataagcgatttgaaaggcttc
caagattatgaaatcaaatttaacatgggcaaaccatttctaccctttcaacagttgttg
gcagtgctcccagccgccagtaggaccctattgccggcagcctatagagatctaatgacc
agcgctagcagcgacttgatagattattatccagaagactttgcaaccgatctcaatggc
aagcagcatgaatgggaggctgttgttcttattccttttatagatgaaaaaatactatta
gaagccatggcagcatgtgaccaaaatttgatgcctagcgaacgaaaacgtaaccaacac
ggtcctatgttgcagtacgattaccatcccgagtcccaaggacaagttgcaggcgtatat
tcgctcaaagcattataccacgtattttgtacagaaaaaccattttggtcgcaagatatt
ttagtatctcctcaaaagactgtctgtgtcgaactgcctaacgcagctcgctcagtattt
ttcccaggttttcctactatgaaacatttaaattataagtttcaaattaagaatggtcgt
gtcaaagtttttgactatcccagtcgtaacgaaaatatgattcttcaaccggaaagtcgc
aaaaatatggacgatgtttatgcagtagctgaaaaatatctaaatcaaatcattttcatt
ggctggcctcacttagttagggccaaagttgtaggcgtatcaaataaggagaaatacata
gatgtggatggtattaaagatttggaaccgaaaatattcgattttcatgttaaaacagcc
caagaacatttatccacacgcatgggcatcgaattttcagattattctgttatggttcat
gtacgaacatatacaggttcgtcatatatatgtggcagccagggaaaagtcaccaacaac
gaagtgtggagtcaattcactacagcctatcctgctcagggggtggtgtctcatattgcc
attcacaattccgtgacgaaccaacataagaaaattgaacaattgtttccagaaaacagc
aaaatattttttgtgggcaatccatattacggcagtgagggtgtagtcatgaatcctatg
ttggtatatgagtgtggcaggcttaaagtaaatattaccgtattaccagaaccggacttt
tccgaagcgaaatacgttcaaaaccaacttgaaagagactacataaatacgtatcaggca
gctgctcaaatcggtatacatgtgaaaagcttagcccgtattacaggctctgtgctggtt
gttaaaggtggcaggcgtcctaaagcagatcttcccgataatttgccaaaattaaatata
ggtctacagtttaaatatatcaaacaacaagaagagctggctggttatgctagacgcatt
gacaaccagtggttcctgtctaccaaggctattgctcttatacaattgtatgtagcaaga
tttcccgttgtgattgagtatttgagcaaagcctcagatcgtgctgagttgcttttcgaa
caggatctgtttcccttggacgttggagaaaagaaggtagaagaaatagtgtcctggctg
aaagagcaagatcacgcgaaggccgaaagggtagcttgcggatcgaaaactatggaaaaa
gaatctgtagaaaaaattttagacgccatcgagcaattaaagactctaccggttaagaca
gtgaaactgcaagtaaagccccatctgttacttaaacccgatgttagtttgcctgatgta
tacaaggccaaaaggtcaattaaattattcgatcgtgtcgttattgttaaaactacttac
atggttcctcttggttctaagggtactgttgttggaatttatcctgtaagtgatccaaat
ccagtacgtttggaatgtgttaaagctgtggataatttttacgaaattctctttgataaa
cacataccaaatggtaacgacatgcatggtattgcctcacagcgtgtgtacaaagtacca
gaatcttccgtccttttaatatttactcaagataacaatagacaaaatgacaatttctat
gactcgaaaatgtcctgtcaattagaagacaataaagatgtatccatgaagtcatggaga
agacagagtaacgtgccaactaccacaaactctgtaaacaacgattcgactgtgacaaat
gcagaggcagttaaacaacaaacacaagttgtagaaaaaggcggcgatgatttttggatg
cctgctgtaaatacaaaacagaaacattcaaatacaattaaaattatgcaaaatcccaat
caaactcttcaatcaaattcatcaaacaatatcaaccaactacaacatcacacaacaaca
gcatcatctgtagaaccgcagcagtgcaatgatggcacacaacttttaaagtccctttta
ggtttatcggctaatcaatctcaggttatccccggaccagcagtttcagctaaaccacaa
ttgccgcaaccaccaacaagttggcgtacagatgctcaaaaaatgcccgtcatgccacat
aatttccctcgcatgcctcttccacaaaatccctatatgccatcgaatgcacctttagct
ctaatcggaggcaatgttgtcccattgccatccacccaacaaatgatgtcccaatatcaa
caacagccacatatgcagtttcaacaaggaaatcaaacaactcaacaaccgccgcattac
caacaattggcgcagcagcagcaaaatgtaacgatgccacaagacaaaatattcagttta
aacagcttaaatcaaaagggtgcatttataccgctccaagtttcacgcggaaataacagt
ttctcaaacaatggacaagcagccactacatcatcgaataatcaaattgattcaccatct
accatcgttcaaaatctaaacgaattgtctttgcacggcattatcgatggagacaatata
aagcaagaaactactgatattaagccctcttatggacgcaagaaacctccacgtgttcca
aaaattggagctaaattcgataaaaaataa
DBGET
integrated database retrieval system
