Calliphora vicina (urban bluebottle blowfly): 135962497
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Entry
135962497 CDS
T10781
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135962497 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135962497 (Not1)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135962497 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135962497 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
CNOT1_1st
DUF3819
CNOT1_HEAT
DDHD
CCDC53
DUF4327
Motif
Other DBs
NCBI-GeneID:
135962497
NCBI-ProteinID:
XP_065370526
LinkDB
All DBs
Position
5:79180777..79198779
Genome browser
AA seq
2547 aa
AA seq
DB search
MNLDHLKLTLTQIGNLVKQINKKNFAETTVSLNQLIEEFGLEADRHCLRCLFSSINFSDP
ILTSTSPTSSIQQHQQQLQAKLLQQQLEKQLSRASHISNICFAIDNCWPQQKSLNPTNQL
INQIVRVTGINKLCECILSLSLTHSQQVELRTYAAEQLSKALPELIDSYLGKSLQSAGVI
SSLHDVSLDLLQLLLTCLDTYVGKASLREQFIEKLREEFPRDRVPLILAPYLYSTLFEAT
TTTTVEAEAAGATEEIPNDFGLLASSVNSTNGYVCVEVPIEEIYDNICETIFSHHDHNNI
MDTSWINLILEIGYEFTSSVEDCKNHLRSGTTGNGTGSGAGGGGAGSGSGSRDLQPQDVA
KIIGLMCRRHTSLLDCNVNLPTPANFWPQQQATQNANQQQQQQNANNNNENSSGNADKSN
NGNDKKDKAPGGNSSSGSGSTDTTQAWKPDVFVQALKEVQPQLNWKDVCQELDHPEFILK
DRIGLDLLLTIFRLATQSTLFPYPEYIYRHWQNVEGQFSLIAVMLKNPDLFSFADYIFNA
SPVEILKTPPDTENKEICAWKSLHLVEVLLYVAEHGYYAPVHELFKFPAQHCPDVLFLSL
LHINPPLTGLRQELFNQLVPTFLANHPNSGVILASAWNSNHFSMTLRPIIMHAMSEWYLR
GTEYDQVKLSRILDVAQDLKALSTLLNARSFVFVIDLACLASRREYLKLEKWLSDKIRDH
GETFIQAILKCLQRRCPQVTNAKIPDDQLPPKQAQLPPETVNTMLSCLQACIGNVPHDIA
EIIMQMTANCSIMANKARAAAAAAVQQGPLVPPQNAMRGHRGMDMTAAGVGGVPGGVPPP
FSANLNAQQMFGTTMDTLSNLTTNIAGLNLGGPNGAFNFGNVLNTLVSTPASPSRLMNPA
AASPYPLNPMQMAAPPPSVGGLGRMPPSAQQPTPTPPNSNNPIIADFQGPVSKEIEDEAN
SYFQRIYNHPPHPTLSIDEVLDILQRFKESNIRREQEVYQCMLRNLFEEYRFFAHYPEKE
LQITAQLFGGIIERNLVPTFVALGLALRCVLDALRKPEGSKLYYFGITALDRFKTRLHTY
NKYCEYIRSIPHFKDFPPHLLQYVEYGFLGQEPPAAKLQMLMSSGGGGGGNQPPPDSIYR
SNSVTGNIVTTPTQQKPMVVAQSIHPARMKSIVTATNIDTLLVANHEEKVTVPPEAVQDK
TAFIFNNLSQLNIPQKVEEIKDIMNKDYWPWLSQYLVLKRASMEFNFHSLYSNFLDALKN
PDINKYVTKETLRNIKVLLRSDKGVVNFSDRSLLKNLGHWLGIMTLGRNRPILQLDLDLK
SLLAEAYHKGQHELLFVVPFVAKILESSNKSKVFKSPNPWTMAIMNVLGELHQEPDLKLN
LKFEIEVLCKTLNIDLNKLKPIIYLKDPSRYGMIEHQMAIPKQKSIEPGPSQQQQQQQQQ
QQQQQQQQQQQQQQQSQQQPTPTPHQQQMMTEADAQAMMMAANAGAAGVVVPGTSIPSPS
IPNEQTGQMMMPAPEPRYSYVDINVTNFQLIAQHVVLSPQVAFLHVNPNIKHLVLNAIER
TITEWLQPVVDRCVRIAASTTEQIVRKDFALDPDEHRMRTAAHQMVRNLAAGMAMITCKD
QITQTLNNNLRKAFMTTLPGPPTFQDIEGASMQLTNDNVELACAFIQKTAAEKATPEVDR
RLAADFETRKMAREENNRYFDAQTLAYQTERLPEQVRLKMGGVPPNQFAVYAEFARNIPG
FQGMSDRDIALFLPKPQEMPPTFAQDEMGLMYTELASKMETFLNSCVNNSNLQLQASKIH
ALLNALMVTRRIRDNDSALNLLTRCVEGFVEGLINIPEHVEQMKLYRDIHLRILTLLQNT
FSAPATERAITKCIFDIREEARYNVEAIKLLITSQFLNLHQFDLALRDCMDNGNNFLAVT
FSITLMERLLVDDRSTSIIAETEFSCTTDLLNRLTQHRHRYPEALSNFIDMHFGSSNTMD
AGTFGSITDRYLAGATQYIHSGMQHVRSNDCDDPPGLQEKTEFLLKDWVSIYSQSHNLSR
ETKNFGSFVQKMNLYGILKTDDLITRFFRQATQFCIDLVYRIFNDPSHTPVQAKTKIFHW
IDAFVHLIALLVRHSGESGNPTTKINLLNKVLGIVLGILLQDQEVHGVTFQQLGYHRFFV
MLFLELSSSDAVLESLMHSIVTAFSHTYHLLNPSLAPGFCYAWLELISHRVFIGRILAQI
PQQKGWPLYAQLLLDLFKYLAPFLRNAELAKPVQMLYKGTLRVLLVLLHDFPEFLCDYHF
GFCDAIPPNCIQMRNIILAAFPRNMRLPDPFTPHLKVDMLAETATAPKICSNYVINIQPA
NFKKDLDSYLKARAPVTFLSELRSHLQISNEPGSRYNIQLMNALVLYVGTQAIAHIRNKN
FVPNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAE
ANSEAIQEQITRVLLERVIVSRPHPWGLLITFIELIKNPIYKFWQHDFVHCAPEISKLFE
TVARSCMVKSNHPQQMNNMDGEIQDIN
NT seq
7644 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagaccatctgaaattgacgctgacgcagattggtaatttggtcaaacaaata
aataagaaaaattttgctgaaacaactgtaagcctcaatcagttaattgaagaatttggc
ttagaagcggatcgtcattgtctgcgttgtctattttcaagcattaactttagtgatcca
atattaacgtcaacgtcaccaacgtcatccatacaacaacaccaacaacaactgcaagct
aaactactacaacaacaattggaaaaacaacttagccgagcttcacatatatcaaacata
tgttttgccattgacaattgttggccgcaacaaaagagcctaaaccctactaatcaactt
atcaatcaaattgtacgagtaaccggtattaataaattgtgtgagtgtatcttaagtcta
tcgcttacacactcccaacaagtggaattacgcacgtatgcagctgagcagttgagtaaa
gctttgcccgaactaatcgattcatatttgggtaaaagtctacaatcggctggagtaatc
agcagtttgcatgacgtctctttggatttgttacagctgttattaacctgtttggatacg
tatgtaggaaaggcaagtctacgtgagcaatttatagaaaagttaagagaagaatttccc
cgtgatcgagtaccgcttattttggcaccctatttgtatagtacgttatttgaagcaaca
acaacaacaactgttgaagctgaggcggctggagcaactgaagaaataccaaacgatttt
ggtttgcttgcgagtagtgtaaactctactaatggctatgtttgtgtggaagtgcccata
gaagagatctatgacaatatatgcgagacgatattttcccatcacgatcacaacaatatt
atggacacatcttggattaatttaatcctagaaattggttatgaatttacctcaagtgtt
gaagattgtaaaaatcatttacgcagtggaacaaccggcaatggaacaggcagtggagca
ggaggaggcggagctggtagtggctcaggcagtcgtgatttgcaaccacaagatgtggcc
aaaatcattggactcatgtgtcgccgacacacctcactgctcgattgtaatgtaaatctg
cccacaccggccaacttttggccccaacagcaagctacacaaaacgccaaccaacagcag
cagcaacaaaatgccaacaataacaatgaaaattcctccggtaatgcggacaaatccaac
aatggtaatgataaaaaagataaagcgcctggtggaaattcttccagtggtagcggcagc
acagacacaactcaggcctggaagccagatgtatttgtccaagccctaaaagaggtacag
ccccagcttaattggaaagatgtgtgtcaggaactggatcatccagaattcattttaaaa
gaccgcatcggtctggatcttttgttgaccatattccgtttggctactcaatcgacatta
tttccatatccagaatacatttatcgccattggcaaaatgtcgaggggcaattttctctt
attgccgtcatgttaaaaaatcccgatctcttttcatttgccgactacatattcaatgca
tcgcccgtggagatacttaagaccccgcccgataccgagaacaaggaaatatgtgcttgg
aaatcattgcatttagtggaggttttattgtatgtagctgaacatggctactatgctccg
gtacatgaactctttaaatttcctgcccaacactgtccggatgtattgtttctttcactg
ctgcatataaatccacccttgactggcctaaggcaagaactattcaatcagcttgtaccc
accttcttggcaaatcatcccaattcgggtgtcatcttggccagcgcttggaattcaaat
cattttagcatgactctaagacccattataatgcacgccatgtctgaatggtatttgcga
ggtaccgagtacgatcaagtgaaattgtctcgcatcttggatgtagcccaagatctgaag
gcactttcaacattgttgaatgctcgatcttttgtattcgttattgatttagcttgcctg
gcgtccaggcgtgaatatctgaaattggagaaatggctgagcgataaaatccgcgatcat
ggagaaactttcatacaggctattctaaagtgcttgcaaagacgctgtcctcaagtaaca
aatgcaaaaataccagatgatcagttgccgcccaagcaggcccaattaccaccggaaacg
gtcaatactatgctgtcctgtctacaggcctgcattggcaatgtacctcatgatattgcc
gaaataatcatgcaaatgactgcaaattgttcgataatggcgaacaaagctagagctgca
gcagctgctgctgtccagcaaggtcccttagtaccacctcagaatgccatgcgtggtcat
cgtggcatggacatgacagctgcaggtgtgggtggtgtacccggcggtgtacctccgccg
ttttcggccaatctaaatgcccagcaaatgtttggcaccaccatggataccctttcgaat
ttgactaccaatatagctggacttaatttaggtggtcccaatggtgcgtttaactttggc
aatgttctcaacactctcgtctcaacaccagcctcaccctcgcgtcttatgaatcccgcc
gctgccagtccatatcctttgaatcccatgcaaatggcggcaccaccacctagtgtgggc
ggtctgggacgtatgccgccttcggctcaacagcctacacccacaccacccaattccaat
aatcccataattgccgacttccaaggacccgtctcaaaggagatcgaagatgaggccaac
tcttattttcaacgtatctacaatcatcctccacatccgacactgtccatcgatgaggtt
ttggacatactacagcgcttcaaagaatcgaatatacgtcgtgaacaggaagtttatcag
tgcatgttgcgcaatctctttgaagagtatcgtttctttgcccactatcctgagaaagaa
ttgcaaataaccgctcaactgtttggtggcattatagaacgtaatctggtgccgacattt
gtagctttgggtttagctctgcgctgtgttctggatgctttacgcaaacccgagggttcc
aagttgtattatttcggtataaccgcattggatcgttttaagacacgtttgcacacctac
aacaagtattgcgaatacatacgttcgataccacatttcaaggactttccaccacatctc
ctgcaatatgtggaatatggatttttgggtcaagaaccacccgccgcaaaattgcaaatg
ctaatgagttctggaggtggaggaggaggaaatcagcctccacctgattctatttatcgt
agtaattcagtcacaggcaacattgttactacacccacacaacagaaacccatggtagtg
gctcagtccatacatccagctcgcatgaaatcaattgtaacggccacaaatatcgataca
ctgctggtggccaatcatgaggaaaaggttaccgtgcccccagaagctgtacaagacaag
actgcgtttatattcaataatctaagtcagttaaatataccgcaaaaggtagaggaaatc
aaagacattatgaacaaagactactggccttggttgtcacaatatttggtactgaaacga
gcctcaatggaattcaatttccattcgttgtactcgaatttcttggatgctcttaagaat
cccgatattaacaagtacgtcaccaaggagaccttaagaaatattaaagttttattacgt
tccgacaaaggtgtggtcaatttctctgaccgcagtctgcttaaaaatctcggccactgg
ttgggcataatgactttgggacgtaataggcccattttacaattagatttggacctcaag
tcgctgttggccgaggcctatcacaagggccagcacgagttgttgtttgtggtgccgttt
gtggccaaaattctggaatcctccaacaaatctaaagttttcaaatcaccaaatccctgg
accatggccatcatgaatgtattgggtgaattacatcaggaacccgatctgaaattgaat
ttaaaattcgaaattgaggtgttgtgtaagacactaaacatcgatttgaacaaattgaaa
cccattatatacctcaaggatccctcacgctatggcatgatagaacatcaaatggcaata
ccgaaacaaaagtctatagagcctggtccctcacagcagcagcagcaacaacaacaacag
cagcagcagcaacaacagcaacaacaacagcagcaacagcaacaatcacagcagcaacca
acgcctacaccacatcaacaacaaatgatgaccgaagccgatgcacaggccatgatgatg
gccgccaatgcaggtgctgctggtgtggtggtgcctggcacttcgataccttctcccagt
atacccaatgaacagacgggacaaatgatgatgcccgccccagagccacgctactcgtac
gttgatattaatgtaactaatttccagttgatagcccaacatgtggtactatcgccccaa
gttgcattcttacatgtcaatccgaatatcaagcatttggtattgaatgccatcgagagg
accatcaccgaatggctacaacctgtcgtggatcgttgtgtacgcattgctgcttccaca
acggagcaaattgtacgcaaagattttgctctcgatcccgatgaacatcgcatgcgcaca
gcagcccatcaaatggtacgcaatttagccgctggcatggctatgattacttgcaaagat
caaatcacccagacactgaacaataatctaaggaaggcctttatgaccactttaccggga
ccacccactttccaagatatcgaaggtgcctccatgcaactaaccaacgacaatgtcgaa
ttggcctgtgccttcatccagaagacagcagccgaaaaagccacacccgaagtcgacaga
cgtttggcggccgactttgagacacgcaaaatggctcgcgaagagaataaccgctacttc
gatgcacaaacgttggcctaccaaacggagcgtttgcccgaacaggtccgtttgaagatg
ggcggagtaccacccaatcaatttgctgtgtatgctgaatttgcccgcaacatcccggga
tttcaaggcatgagtgatcgtgatattgctttattcctacccaagccccaggaaatgcct
cccacatttgcccaagacgaaatgggtttaatgtacaccgaattggccagcaaaatggag
accttcctcaatagctgtgtcaacaactcaaatctccagctacaggctagcaaaattcat
gctctgctaaatgccctcatggttacacgacgcatccgtgacaatgattcggccctcaat
cttctcactcgctgtgtagaaggttttgttgagggtctcatcaacatacccgaacatgtc
gaacaaatgaaactgtatcgtgacatacatttgcgcatcctaacactgctgcagaacaca
ttcagtgcaccggctactgaacgagccatcactaagtgtattttcgatatacgcgaagag
gcccgctacaatgtggaggccattaaattgttgataacatcacaattccttaacttgcac
cagtttgatttggctttacgcgactgcatggataatggcaacaactttctggctgtcact
ttttccatcacactaatggaacgtctgctggtcgatgatcgctccacctcaattatagcc
gaaacggaattttcgtgcaccacagatctgttaaatcgtttgacccagcaccgtcaccgt
tatccagaggcattatcaaatttcattgatatgcattttgggagtagcaataccatggat
gccggcacatttgggtccataaccgatcgttatttggccggtgcaacacaatacatacac
tcaggaatgcaacatgtaaggtccaacgattgtgatgatccacccggtttgcaggagaaa
actgaatttttactcaaagattgggtctcaatttactcccagtcccataatctgtcgagg
gaaacgaagaatttcggttcatttgtgcaaaaaatgaatctctatggcattcttaaaaca
gacgatttgattactcgcttcttccgccaggccacacagttttgcattgatttggtgtat
cgcatcttcaacgatccctcacacacaccggtgcaggccaagacgaaaatctttcactgg
atcgatgcgttcgtgcatttaatagctttacttgtaagacattcgggagaatctggtaat
ccgaccacaaaaatcaatctccttaacaaagtgttgggtattgtactgggcattctgctg
caagaccaagaagtccatggtgtaaccttccaacagcttggatatcaccgtttctttgtt
atgctattccttgagctgagctcatctgatgccgttttggagtctctgatgcatagcatt
gttaccgcattctcgcatacctatcatctcttgaatccatcgctcgctccaggattttgc
tatgcatggcttgagttgatctcacatcgtgtctttatcggacgtatacttgcccagatc
cctcaacagaagggttggcctctctatgcccagttgcttttggacttgttcaagtatctg
gcgcctttcctgcggaacgccgaactagcgaagccagtacagatgctgtataaaggaacg
ctgcgtgttctgctagtacttttgcatgatttccccgagtttttgtgcgattatcacttt
ggcttctgtgatgccataccgcccaactgcatacaaatgcgcaatattatcttggcagct
tttccgcgcaacatgcgcctacccgatccttttacaccccacctcaaagtggacatgttg
gccgaaacagcaacagcaccaaaaatttgctccaactacgttatcaacatacagccggcc
aacttcaagaaggatctcgattcgtatttgaaagcaagagctccggtcacttttctctcc
gagttacgtagtcacttgcaaatctccaacgagccgggttcacgttacaacatacagctg
atgaacgctctagtattgtatgtgggtactcaggcaattgcacatattagaaataaaaac
tttgttcccaatacctcgaatattgcccacagtgctcatatggacatattccaaaatcta
gcggtcgacttagataccgagggacgttatctattcctcaatgctattgccaatcagttg
cgctatcccaacagtcatactcattactttagttgtgctgtgctacatcttttcgccgag
gccaattcggaggccatacaagaacaaatcaccagagttttactcgagcgtgtcattgtc
agtcgtccacatccttggggcctgttaatcaccttcatcgaattgattaagaatccaatt
tataaattttggcagcatgattttgtgcattgtgctccggagatatcaaagctctttgaa
actgtagcacgttcttgcatggttaaatcaaatcatccccagcagatgaataatatggat
ggagaaatccaagatattaattaa
DBGET
integrated database retrieval system
