Crassostrea virginica (eastern oyster): 111131178
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Entry
111131178 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha B-like
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvn04040
]
111131178
Ion channels [BR:
cvn04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
111131178
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
111131178
NCBI-ProteinID:
XP_022334297
UniProt:
A0A8B8E198
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Position
4:43391740..43448666
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AA seq
1979 aa
AA seq
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MEEEEFFRLLTPQSIVQIEERIAEEKAIKKAEKQAHEEGEEEELAAHEEEEPKPNPKYEA
GKKLPLSLKDLFPVEYTSKPLEDFDDFYEAQKTFVVVGKDMTIYRFSATNACYLLSPFNT
ARRGALYVLVHPLFSALIIITIIVNCAFMAMTEQPFDWIEYVFTGVYTLEALIKITARGF
IINNFTYLRDPWNWLDFAVISLAYLEICIIQPLNVDGLGNLAALRTFRVLRALKTVAVIP
GLKTIVGALLEAVRRLRDVMILTVFMLSIFALVGMQLYMGTLRQKCATFTNFTYDNTTEG
NETLMTYEEAWLEWAMDKDHWYKKEGSDEYLICGQGSGAGSCPPEYICINNTDTNPNSGF
THFDNFGTALLCTFRLMTQDYWENLYQITLRAEGPYHCLYFIIVILLGSFYLVNLILAIV
AMSYDETQKQDQADADEEEEERKDDISCGRSSIQQTIHDGLREDYHEYLEEKLSQAKSQS
ETSLSDHDNADKISLRSNKPDENGQFLSVTKKQPSLSLPGTPFVRRNTKKKYNPIHGDHQ
PLMLDNLPYIDDPNAVTPCSDDLNMNLTYKQFIASRRGSYASLLKRTGXSRRSSFASRDS
RRSLPKSPRSPLEKPGKLDTPWDWKKPKDSSLLHPLDAGDRGKHTENGSIHGSRLEIQKK
SHDEELCHHHGSKHVDPRDMMVLKNLLAHAEGHRNSRHSVVSDFLPFEEEEKPLKDRLYD
RFCSWTCCPCYQKFQEIVSIIILDAFVDLFITICILVNTAFMAADQHPKSPELTEVLTYG
NYVFTGIFAAEAFLKLIALSPVYYFKDGWNCFDFFIVTLSFVEMALDGVSGLSVLRSFRL
LRVFKLARSWQTLNMLIRIVAGTMGALGNLIFVLAIVVFIFAVMGQQLFRDXYIDEYGDD
MPRWSFIDFLHSFMIIFRVLCGEWIESMWSCTNSNGPACVPFFLLTYVIGNLVVLNLFLA
LLLNSFGAESLSGGEAEEDKEPNKLSEAIGRFKRFGRWVKVKVIVCLKVKMKAKPKPTDR
SPSTPRLNGKXTIPDGGQTYSNGTVIEMQAKSEDDDEHSVPDKSTTIVLEDEKKMEDNTQ
PNSSASPRESLSSNSHHSLSDDDTKLSLTKVNADGEPEINEVKVTYANYPDDCFCKVCRR
KCPCCIRFENTSWGKRAWKIRCLAYALVEHKYFETFIITMILASSVALAIEDVYLDERPT
LKQILEITDKFFTAIFIVEMFIKWTAFGYKKYFTDAWCWLDFVIVGISIMMLVFEIIGMD
KVSAIKAMRTLRALRPLRAVSRWEGMRVVVNALIKAIPSIANVMMVCLIFWLIFGIVGVQ
FFAGKFFKCVDADGNKLSPNITANKTECEAKGYEWINSKVNFDNVLMAYLALFQVATYKG
WIDVMNDAIDSKNIDEQPEREDNVYMYLYFVFFIIFGSFFTLNLFIGVIIENFNQQKKKA
GGSLEMFMTEDQKKYYKAMKRMAAKSPQKSIPRPGNIIMGWIFDAVTNQKFDIGIMIIIM
LNMLTMALEHYKQSDMFTTILDQINMTFIIIFTIECVLKLIGLRHYYFKFPWNIFDFIVV
VLSIVGEIVSVALSDVMDQFLVSPTLLRVVRVFRVGRVLRLVKSAKGIRTLLFSLAVSLP
ALFNIALLLFLVMFIYATFGMSFFMHVKHQYGIDDCFNFETFFRSMIYLFQMCTSAGWDS
ALAGITNEVDCIEETTELPDGTMQYRDCGNYQAGVLFLTSYLIISFLVVVNMYIAVILEN
FSQATEDVQQGLTSDEFDLFYEKWEKFDPEATKFIALSQLSDFVDYLEEPLRLPKPNHFM
LVKLDIPICEDDKVYCRDILDALTKNFLGTSDTPGEIDVNEVDKDKEKIEYNVASSTLLR
QKEHYAARIIQKAWRRYRNERGNTSPPPYDMVISKESDMVTSKESDMATSKDSKETATTV
HEDTSSTKSVKSDASNKQIAGSSVDVHIEIPESEITEETAMLSPENRTVELRADSDVVA
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaattctttaggcttctaactccacagtcaattgtgcaaatagaggag
cggatagcagaggaaaaagcgatcaaaaaggctgagaagcaagcccatgaggagggggag
gaggaggagttagctgctcacgaagaagaggagccaaaacccaatcccaagtatgaggcg
ggaaaaaagctccccctatcgctcaaagatctgtttccggtggaatataccagcaaacct
ttggaagactttgatgacttctacgaagcgcagaaaacgtttgtggtggttggaaaagac
atgaccatttaccgattcagcgccaccaacgcctgctatttactcagccctttcaacaca
gcccgaaggggcgccctctatgtgctcgttcatccattattcagcgctttaatcatcatc
accattattgtcaactgtgctttcatggctatgactgaacagccatttgattggatagag
tatgtattcactggtgtttacaccctggaagctctgatcaaaattaccgcccgtgggttc
ataatcaacaattttacttacctaagagacccgtggaattggcttgactttgcagtcatt
tcccttgcgtacttagaaatttgcattatacaaccgcttaatgtggacggtttaggaaat
ttggccgcgctccggacctttcgagttctcagagcacttaaaactgtagcagttattcca
ggattgaaaacaattgtgggtgccttactggaggcagtgcgacgactccgtgacgtcatg
atactgactgtcttcatgctctcaatttttgccttagttggtatgcaattatacatggga
actctcagacagaaatgtgccaccttcaccaacttcacttacgataatactacagaaggc
aacgaaacgctgatgacgtacgaagaagcatggttggaatgggctatggacaaagaccat
tggtacaagaaggaggggagcgacgaatatctgatctgtggccaaggttctggggcaggg
agttgtccgcccgagtatatatgtattaacaatacggacacgaacccaaactctggcttc
acccacttcgacaactttgggacggctcttctatgtacattccgtctaatgacacaagac
tactgggaaaacctttatcaaattacgctgagagcagagggtccgtaccattgtctttac
ttcatcattgtgatacttctgggatcgttctaccttgttaatctgattttggccatcgtc
gccatgtcttatgacgaaacacagaaacaggaccaagcggatgctgacgaggaagaagaa
gagagaaaggatgatatttcatgtggtcgttccagcattcaacagacaatccacgatgga
ttacgggaagactaccacgagtatctagaggagaagctgtctcaagccaagagccaatca
gaaacgtcattaagcgatcatgacaatgctgacaaaatcagtctccggtcgaataaaccg
gacgaaaacggccaatttttaagcgtgaccaagaagcaacctagtttgagtttgcctggc
acaccatttgtacggagaaacactaagaagaaatacaatccgattcatggcgatcaccaa
cctttaatgctggacaatctaccgtacattgacgaccccaatgccgttaccccttgttcg
gatgatttaaatatgaatttgacttataaacaatttattgcgtcacgaagaggtagctat
gcgtctttgctaaaacgcactggtntctctagacgcagtagttttgcgtctcgtgacagt
agacgctcacttccaaagtcaccgcggtctcctttggagaaacccgggaaactagacact
ccctgggactggaaaaaaccaaaggacagctcacttttacatccccttgacgccggggat
cgtggtaaacatactgagaatgggtcaattcatggttcacgattagagattcagaagaag
tcacacgatgaagaactttgtcatcatcatggcagtaaacatgttgacccaagagatatg
atggtgctgaagaacctcctggcgcacgcggagggacatcgaaacagcaggcatagtgtg
gtgagtgattttctaccgttcgaagaggaagagaaacccctaaaagaccgcttgtacgac
cgattctgtagctggacgtgttgcccgtgctaccaaaaattccaggagatagtcagtatc
atcattctagacgcttttgtggacttgttcattaccatctgtatcctggtgaacacggct
tttatggcggcggaccagcacccaaagtcaccagaacttacagaagttcttacctatgga
aactatgtattcacgggaatttttgcagcagaggctttcctcaaattgattgctctgagt
cccgtatattactttaaggatggctggaactgctttgattttttcatcgtaactctcagc
tttgtagaaatggcactggatggagtttcggggctatctgttctcaggagctttcgtttg
ttacgagtgttcaagctcgcaagatcatggcaaacgttgaacatgctgatccgaatcgtg
gcgggaacgatgggagctttaggaaacctgatattcgttctggccattgtggtgtttatc
tttgctgtgatgggacaacagttatttagagatnggtatatcgatgaatatggtgacgac
atgcctaggtggagtttcattgactttctgcattcttttatgataatctttcgggtgttg
tgtggggaatggatcgagtccatgtggtcctgcaccaattccaacggcccggcatgtgtc
ccattctttctactgacgtatgtcattggcaatttagtggtacttaacttgtttcttgct
ttgctgttgaactcgttcggagctgagagtctcagtggcggagaagcagaagaggataaa
gagcccaacaaactgtcggaagccatcggcagattcaaaagattcgggagatgggtgaaa
gtaaaggtgattgtgtgcttaaaagtgaagatgaaagccaaacctaaaccaactgataga
agcccatcaactccgcggctaaacggaaagngaacgataccagacggaggccaaacatac
agcaatggtacagtgatagaaatgcaggctaaatctgaagatgatgatgaacactctgtt
ccagacaagtcaacgacgattgttttagaagatgaaaaaaaaatggaggataatacacaa
ccaaacagttcagcaagtccaagggagtcccttagttccaacagccatcattcattgtct
gatgacgacaccaagttaagcttaacaaaagtcaatgcagatggcgagcctgaaataaat
gaagtcaaggtcacatatgcaaattacccggatgattgcttctgtaaagtgtgtcgacga
aagtgtccctgctgcatccgatttgagaatacttcatggggaaaaagagcatggaaaatc
cgatgtctagcttatgcccttgtcgaacataaatactttgaaacctttatcatcacaatg
attcttgccagtagtgttgctcttgcaattgaggatgtttatctggacgaaagaccaaca
ctaaaacaaattcttgaaattaccgacaagtttttcactgctattttcatcgtagaaatg
tttataaaatggactgcgtttggatataagaaatatttcacggacgcttggtgttggctt
gattttgttattgttgggatttccatcatgatgcttgtatttgaaattattggcatggac
aaagtgagtgcaataaaagccatgcggacccttagggctttacgacctctgcgtgccgtt
tcgcgctgggaaggaatgagggtcgttgtcaacgcattaatcaaggccatcccttccatt
gcgaacgtcatgatggtatgcctgatattctggttaatatttggaattgtcggtgtgcaa
ttcttcgctgggaagtttttcaaatgtgtcgatgcagatgggaacaagctgtcaccaaat
attacggcaaataaaacggaatgtgaggctaaaggttacgaatggataaactctaaagtc
aactttgataacgtgttgatggcatatcttgcattattccaagtagcaacgtataaaggc
tggatcgatgttatgaacgacgccattgatagcaagaatattgacgagcaaccggagcga
gaggataatgtttacatgtacctctattttgtcttcttcatcatttttggatccttcttc
actttgaatctcttcattggtgtcattatagaaaattttaatcaacagaaaaagaaggct
ggaggctcattagaaatgtttatgacggaagaccagaagaaatactataaagcgatgaag
cggatggcggcaaagtcaccacaaaaatccattcccagaccaggaaatataatcatgggc
tggatatttgatgcagtgacaaaccagaaatttgacatcggcatcatgataatcatcatg
ttgaatatgcttaccatggctttagaacactataagcaatcggatatgtttaccactatc
ctggatcaaatcaatatgacgtttatcatcatctttaccatagaatgcgttttgaaactc
ataggactgagacactactacttcaagtttccgtggaacatctttgacttcattgtcgta
gtgttgtccattgtaggcgagattgtcagtgttgcactgagtgacgtcatggatcagttc
ctggtatcacctacccttctccgagttgtccgtgtgtttcgagttggaagagtgcttcgt
ttagtcaagtcagcgaaagggattcgaacattgttattttctcttgccgtgtcattgcct
gctctatttaatatcgctttactgctgtttcttgtaatgttcatatatgccacgttcgga
atgagtttctttatgcatgttaaacaccaatatggtatagatgactgttttaactttgaa
acattcttccgtagtatgatatatttgtttcaaatgtgcacatccgctggctgggatagt
gccctagctggaattacaaacgaggttgattgtatagaggaaactacagaacttccagat
ggaacaatgcaatacagagactgtggtaactaccaagcaggtgtgttgttcctaacttcc
tacctaataatcagtttcctcgtggtagtgaatatgtacatagctgttattttggagaac
ttcagtcaagcaactgaagatgtccaacaaggcttgacttcagacgaatttgaccttttc
tatgagaaatgggaaaaattcgatccggaagcgacaaagtttatcgcccttagccagtta
tctgattttgtcgattacttagaagagccgttacgacttccaaaaccgaatcactttatg
cttgttaaactagatataccaatttgcgaagatgataaagtgtattgcagagatattcta
gacgctttaacaaagaattttcttggaacttctgacactccaggggaaatagatgtcaat
gaggtcgataaagacaaagagaaaattgaatacaatgtagctagttccacattactacga
cagaaagaacactatgctgcacgaatcatccaaaaagcctggagaagatacagaaatgaa
cgaggcaacacttcacctccaccttacgatatggttattagcaaggaaagtgatatggtt
acaagcaaagaaagtgatatggcaaccagcaaggatagtaaagaaaccgcaactactgtg
cacgaagatacgtcaagcacaaagagtgttaagagtgatgcttcaaacaaacagattgct
ggaagttctgttgatgtgcacattgaaattccggaatcggaaatcaccgaagaaacggct
atgttgtcaccggaaaacagaacggttgaactacgtgcagatagcgacgtagtagcttga
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