Crassostrea virginica (eastern oyster): 111131294
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Entry
111131294 CDS
T09197
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111131294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111131294
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111131294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_17
TPR_14
TPR_1
TPR_16
TPR_11
TPR_CcmH_CycH
TPR_8
TPR_12
TPR_9
TPR_7
ANAPC3
ARM_TT21_C
TPR_30
BTAD
ATG1-like_MIT2
Peptidase_Mx
SNAP
TPR_COPA_B
TPR_20
Motif
Other DBs
NCBI-GeneID:
111131294
NCBI-ProteinID:
XP_022334452
UniProt:
A0A8B8E415
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All DBs
Position
4:complement(15449028..15469505)
Genome browser
AA seq
1480 aa
AA seq
DB search
MDPRELKSALKNARESIKNKEFKEALRHCKEVLGQDKNNYNALVFVGVAADGLEQAEQAL
KAYRRAAEVEPNQPLAWQGLSGFYEKHPSSENDRELLQVYQKLTGIFEKDIDKKTETTKK
LAHLHLKLGEPDIGVELYVKLFSEASDDTVKCNLQTELLSLLSQLSSLTQDQEHMLIDMV
DNVLKSDSQLDERVVSLYLDLVIKNKGSSDLEKSCQVVCEKYPGMKYPLEVSILLLMDRA
FCSKPLLPVMETSLLSLTTRLSELDDQSPMLKAAQGFQSLCNRELIPARDCFVQVLPDLS
STVCVQYFLSLSHFLLHKLADAEASVKQCALTLGKKSRRVTVAIGPVSRKVKVLHIRILL
HSGSPSSLQTALALTKELCTDGANPEVLCLKGHILLKLNRADEVEEIVNKLENGETRRTL
EGHLMFQRAEYSKSAAIFTELIKQTSNNSEHHLMYAKSLWENKSSLQNNLQTCHTALLKS
AKLDPYRSEPFEYLGRFYSQIQRDKVKAKRCFQKAFDLDRTNEGAGEALCDLMVELGEED
EAYQLLLSVTRAASAGCCKWAWLRLGLHQVKHDTASAAISSFQSALRADPKDPHVWECLA
EAYYKRGSYTAALKAFTKASELNPKSLYSLFMIACIKQTLSMLTEAIEEYKLILKDSPDY
VPALKGLGETYVLLAKHHLSQGFNARAKLNCQDALQHLTRAVCHRPDLSCIWKLMGDSCT
ILHPLPAKLFSFTVPENLYKSTESESSCNLDLLQTLELGARCYGRALKLLPDCPQLWHDL
GFSLYQQSLRPEVQDAGGVAAKSAEALKKGLSLDPANHQIWNTLGLVYCNSGLKKPSLGQ
HCFIKSIQAESANAVAWTNLATLYLKNGNIQLAHEAYKVAQSLDPNYVSCWIGQALIAET
VGDEDAMDLFRHTTELSPHVEGSLGYAHWVCSLLQDKTKRNTEVYNYAIHQMAALPAASD
ALARYLDLVKMNPGAYNMFGLLMEQQGLYATAKEAFQRAIKLIDTGDILVNIVKLNLART
LCKLGEYSQAIIIYEKFGELDSLQDVCHKGLALYKAQNYTDSYRAYDRALEISNTDEDSS
QIHAVLGMVAYKFGDVDGAKSSLFQSSQLQPASRHGLEALCALGLKTRDVTLTQAVLQEL
TGSGTDNSGRYFTVLQYCLLHDNWELAKSFLQKCLYESPENASFWRLLSRLQLRHRHGNR
PSTAAVCAQSALCLEPQHQELMTDITLGQLMDGRHVSGDTNNNALLCAQKAVLVNPEKLE
NWYALVSSVHSQSVMEAEPDRLTALLDIESRYLKWLLSEDKLPKDVKNWCRKQQLIVQLA
SGEVSKESLSDGLKENITHLQQENLKYLQQNDVQQVFILYKTLLGDGGDEETSKTFARLT
EEMTKKTSSPDPLILLMKAVILMKTNPKLAKHRLVDVLVAIRSESPQTPLLRSITRKCLL
HVLRDNPEKEAELIQVLLTEATEDGDTDTVDYHQKWFKDN
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggatccaagagaattgaaatcagctcttaaaaatgccagagaatccattaagaacaaa
gagttcaaggaagccttgcggcattgcaaagaagttttgggccaggataagaacaattac
aatgccttggtgtttgtgggagtggcagcagatgggttagagcaggcagaacaggcattg
aaggcctataggagagccgcagaggtggaacctaaccaaccattagcatggcagggatta
agtggtttctatgaaaagcatccctcttctgaaaatgatagagaattgctgcaggtttac
cagaaactgacaggcatctttgaaaaagacattgacaagaagactgagacaacaaagaaa
ttagcccatctacacttaaagctgggagaacctgacataggtgtagaactttatgtgaaa
ttgttttctgaagcctctgatgacacagtgaagtgcaatcttcagacagagttactgtcc
ctgttgtcccagttgtcttcccttacacaagaccaggaacacatgctgattgacatggtg
gataatgtgctgaagtctgattcacagctagacgagagagttgtcagcttatacctggat
cttgttattaagaataaaggttcctcagatttggaaaagtcttgccaggttgtgtgtgaa
aagtaccctgggatgaagtatcccctagaagtctccatcctgctcttaatggatagagct
ttctgttccaagccccttctacctgtgatggagacctcactgttaagtcttacgacgaga
ctctcggagttagacgaccagagtccaatgctgaaagctgcgcagggattccaatccctc
tgtaaccgagaactgattccagccagagattgctttgtccaagtgctacccgacctgagc
tccacagtctgtgtgcagtacttcctctccctgtctcacttcctgttacataaactggca
gacgctgaagcctcagtcaagcagtgtgccctaactcttggcaagaagagccgacgtgta
accgtagcgattggtcctgtctccagaaaggtcaaggttctccacatccgaatcctcctc
cattcagggtcgcccagctccctccagacagccctggctctcacaaaggagctttgtact
gatggtgccaatccagaggttttatgtctcaaagggcatattttgctgaaattaaataga
gcagatgaagtagaggaaatcgtcaataaacttgagaatggtgaaaccaggaggacattg
gaaggacaccttatgttccagcgagcagaatactccaagtcggctgccatatttacagag
cttataaagcagaccagcaacaacagtgagcatcacttgatgtacgccaagtctctctgg
gagaacaaaagtagcctacagaacaacctccagacctgccatacagcactacttaagtct
gccaaactggatccctaccgcagtgaaccgtttgagtacctggggaggttttacagccag
atacagagagacaaggtcaaggccaagcgctgtttccagaaggcctttgacctggacaga
acaaacgagggggcgggggaggccctgtgtgacctgatggtggaactcggggaggaggac
gaggcctatcagctgttattgtctgtgacgagggcggccagtgctggatgttgtaaatgg
gcctggctgaggttgggtctacatcaggtcaagcatgacacagcgtcagctgctatctca
agcttccagtcagctctacgagcggacccaaaagatccacatgtgtgggagtgtttggct
gaggcgtactacaaaagggggagctacactgcagccctcaaggccttcaccaaagcttca
gagttgaatcccaagtctttatacagtcttttcatgatagcctgcattaagcagactctg
agcatgctcactgaggccatagaggagtataaactcatcctgaaggactctcctgactac
gtgcctgctttaaaagggctaggagagacatatgtactgcttgccaagcaccacttgtcc
cagggcttcaatgcaagagccaaactaaactgccaggatgccttgcaacatctcacaaga
gccgtatgccacagacctgacttgtcctgcatctggaaactgatgggggattcctgtaca
atacttcatcccttaccagcgaaactatttagctttacagtgcctgaaaatttgtataaa
tctacagagtcagagagcagctgtaatctagatttactacagaccttggagctgggagct
aggtgctacggtagagctctaaagttgctgcctgactgtccccagctgtggcatgacctt
ggcttcagcctgtaccaacagagtcttcgtcccgaggttcaggatgctgggggtgtggcg
gcaaagtcagcagaggccttgaaaaaggggctgtccctggaccctgccaatcatcagatc
tggaacacactgggtcttgtgtactgcaattcaggtctaaagaagccttctctaggacaa
cactgctttattaagtctatacaggcagaatctgctaatgcagtagcttggacaaattta
gcaacactttatctaaagaatggcaatattcagttggcacatgaggcctacaaggtagcc
cagagtttggacccaaactacgtgtcctgttggataggacaggctctgattgcagagaca
gttggtgatgaagatgccatggatttgttcaggcacacaacagagttatctccccatgtg
gaaggatctctcggctatgcccactgggtttgttcattactccaggacaaaactaaacgt
aacacagaggtctacaactatgccatccaccagatggcagcactgccggctgcctcagat
gctctggccagatatttagatctggtaaagatgaatccaggagcctacaacatgtttgga
ttgctcatggaacaacaaggactctatgcaactgcaaaggaggcttttcaaagggcgatc
aaactaatagacacaggtgacatcctcgtgaatattgtgaagctcaatcttgcaaggact
ctatgtaagcttggggaatactcccaagctattattatctacgaaaagtttggggagctg
gattcgctacaggatgtgtgtcacaaaggactcgccttgtacaaggcacagaactataca
gacagctaccgagcttacgaccgagccttggagatcagcaacactgatgaagacagttca
cagattcatgctgtgctgggtatggtggcatacaagttcggagacgtcgacggagccaag
tcgtctcttttccaaagctcacaattacaaccagcttcccgtcatggactggaagctcta
tgtgcccttggtctcaaaactcgtgatgtgaccttgacccaagctgtcctacaggaacta
actgggtcagggacagacaactctggcagatacttcaccgtccttcagtactgtcttctg
catgacaactgggaattggccaaatcctttctgcagaaatgtctctatgagtcaccagaa
aatgcttctttctggagactgttgtcaaggttacagctgaggcatcgccatggtaacaga
ccctccacagctgcagtgtgtgcccagtcagcgctgtgtctggagcctcagcatcaggaa
ttgatgactgatatcaccttgggccagttgatggatggcagacatgtgtcaggtgacacc
aacaataatgctttactatgtgcacaaaaagcagtcctagtcaatccagagaagctggag
aactggtatgcccttgtgtcatctgtccacagccaatcagtgatggaggcggagccagac
agattgacagctctcctggacatagagtccagatacttaaagtggctgttgtcagaggat
aaattaccaaaggacgtgaagaactggtgcagaaagcaacagcttatagttcagctcgct
tcaggggaggtatcaaaggaatcactcagtgatggtttgaaagaaaacatcactcattta
cagcaagaaaacttgaaatacttacaacaaaatgatgtacagcaagtcttcattctctac
aagacattactgggtgatggtggggatgaggagacgtccaagaccttcgccagactgaca
gaggagatgacgaagaagacctcctccccagaccccctcatcttgctgatgaaggctgtc
atcttgatgaagacgaacccaaagctggccaagcatcgccttgtggatgttctagtggcc
attaggtcagagtcccctcagacccccctgctacgatccatcaccaggaagtgtctgctg
cacgtgctcagggataatcccgaaaaggaggctgaactcatccaggtgcttttgacagaa
gcaacggaggatggcgatactgacactgtggattatcatcagaagtggttcaaggacaat
taa
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integrated database retrieval system
