Crassostrea virginica (eastern oyster): 111134304
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Entry
111134304 CDS
T09197
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111134304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111134304
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111134304
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111134304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
CNOT1_HEAT
DUF3819
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
111134304
NCBI-ProteinID:
XP_022338918
UniProt:
A0A8B8EHI1
LinkDB
All DBs
Position
5:complement(6860010..6887638)
Genome browser
AA seq
2438 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFKSSVAEISHLVCQHGPEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGNLLGKPNFVSTLCYAIDNPLHHQKSLKPSSQLFTQVSRVLK
LTRVQEVVFGLSLLNSSNSETRNYSVGFVKQKLPDLIKAYVDAEGGLRQEGGLQDVPIEV
IHLLLSNLFKCKDNFGIGSEQKEIFIKTLQKDFPVEGVPVILGPLLYSEAEELSVEKLSD
TSAMPKTALEASLADMILEAGYSCTISVEECRGNLIQFGVREINPSSVAKVLGMMARTPA
GLDGQNVPQSNMSSGWGEVGDKGDKPGLNTWNVEVFVTVIQDLAPHFNWRDVVAELDHPT
FLVVNKKGLRILLQGLNRGLQDMFPVEYIYRPWKNTEGQLSFIVQSLRNPDVFCFADYPC
HTVVIDILKSSPDEDNREIVTWKSLDLVETLLRLSDSGHYQTVSELFKIPIQNCPDMLVL
ALLQISPSWNTLKQELISTLMPIFLGNHSNSAVVLHYAWHCQGHSSTIRTLIMHSMAEWY
MRGEQHDQARLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWLSDKIR
EHGEPFIQTCVNFLKRRCPQLVGGLSKDENQPQMKSQMLPAETIATMLSCLQQCARISNL
RSQVSQELSEAILTMVPNAALIINKARQAAPGVVGPGPKAMPTIPPPSSNPLDPLGESSN
QLGIPKSWQMGAVGNSGFPQGLAAPLTSTTTPGSPAKPGFQPISQPSSVAGLQGISSQLQ
SLSIQNPLAPPRNPGINTLVGQGMLKPTPPPGAPPQPQPTPPTLGQQQSMGPQAVVRPVG
QTAGDISSIFPDIQQQFSKEVEDEANSYFQRIYNQPPTPTMSIDEVLDMLKRFKDSPDKK
EKDVYECMLRNLFEEYRFFPQYPERELHTTAVLFGGIIEKGLATYMALGIALRYVLEALK
KQHASKMYYFGLAALDRFKTRLKDYPQYCQHLAAIPHFHQFPQHLIEYVKYGSQSQEPPQ
QPVSSRSITPTVGGLGLTGLQTGPMGLIPPSGAPIPSIAGSSQEGVPTTTVSTPVPTSQP
PAKSLPKPSIASATNIDTLLAGQGKEEFSVPPETVQDKVFFIFNNLSLANMAQKTEEYKK
EVTEEYLPWAAQYLVMKRASIEPNFHTLYANFVDAINLPKLTTLVTRETFRNIRVLLRSD
KGDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDIDLKGLLYEAYHKGSRDLLYVVPFAA
KVLESCAKSKVFKPPNPWTMAIMNALAELHQEPDLKLNLKFEIEVLCKTLNIDLGELKPG
NYLKDTIRLQTHEPQLSTVKPVIQPVVVTPQPDPSLILAASTPTAVTTTTTVTTTTAAPS
SGTPNLPPRPQFAYEDINTNNFATLANQILISGQATLLQTQPQLKPLVKMAVEKSVQELM
PPVVERTNKITLTTCEQVIKKDFALDPEETRMRAAAHHMIRNMTSALALITSREPLYHSI
ASNLRSAFMNSLRLTAETASARDKEAIEQAATVLATDNAELACVFIQKTAVERAIPEMDK
RLATEYELRKHARNEGRRYCDPGVLTYQAERMPEQIRLKVGGVTPAQISVYEEFAHNIPG
FLPTNETPQAHPGVTKPVPVQPDEISQMLEKIGRDIEQVLQNFMVPPSNPLGSQLHKVLD
AVLYARNSREIGSIETLLQKTVNGLMELYTNNTSEQELMSRFRDCHILVLKCLQDPRAYG
SGWLKKQVTRALVERSDDHKYNIEALDCLIRNQLVNLPQYDMYLVQLMENGMNYMAVAFA
MQLIQRYCISDKHGAILTETDFANTIEGLNAISTRSISPPEGLQTLLDSLRGSSSGGNSS
GSAPNTDFIIMDQNAALKAASGMMHTGIIQARDIDGDPPGLHEKAEYLLREWVNMYHSPA
AGRDSTKAFTAFVQQMHQQGILKNDDVITRFFRLCSEMCVDLCYRAMGEATGTPPTNQAL
IRAKCFYTLDAFVRLIALLIKHSGDNANTVTKINLLNKVLGIVAGVLLQDHIVRMSEFQQ
LPYHRIFIMLFIELNAPEHILENINYQVLTAFCNTFHVLRPAKSPGFSYAWLEFISHRVF
IGRMLAITPQQKVSEGWGMYAQLLIDLFKFLAPFLRNADLTKPTQMLYKGTLRVLLVLLH
DFPEFLCDYHYGFCDVIPPNCVQMRNLILSAFPRNMRLPDPFTPNLKVDMLADISHPPRI
LINFASKIQPAQFKKDLDSYLKSRSPVTFVSDLRSYLQSSEPGTRYNIQLMNALVLYVGT
QAIQFIHGKGLTPSMSTIAHSAHMDIFQNLAVALDTEGRYLFLTAIANQLRYPNSHTHYF
SCTLLYLFAEANTESIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWNHEFVH
CAPEIEKLFESVARSCMQPKQNQQATTGLREADTSEMH
NT seq
7317 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagactctttatcatttgctttggctgaaataagttattcagtggccaatcta
acgaagaaaaattttaaatctagtgtcgctgaaataagtcatcttgtttgtcaacacggc
ccagaggcagatcgacatttgtttcgctgccttttctctcatgtagactttagtggtgat
ggtagaagcagtggcaaggattttcatcagacacagtttttgatacaagaatttggaaat
ctactagggaaaccaaattttgtatcgactctctgttacgctattgacaatcctcttcat
catcaaaagagtttgaaaccatcatcacagctctttactcaagtcagtcgtgtcttgaag
ctgacacgagttcaagaggtcgtgttcggattatctctccttaattcatccaactctgaa
accaggaactattctgtcgggtttgttaaacaaaagttgcctgatctcatcaaggcctat
gttgatgcagagggtggtttaagacaagaaggaggactgcaggacgttcccattgaagtc
attcaccttttgttatcaaatctgtttaaatgtaaagacaactttggaataggatcagaa
caaaaagaaattttcatcaaaaccctccagaaagactttccagttgaaggagtccctgtg
attttgggaccgttgttatattctgaagcagaggaattatctgtggaaaagttatcagac
acatcagccatgcctaaaactgcattggaggcttccctggctgatatgattctggaggct
ggttacagctgtactataagtgttgaagaatgtcgtggaaatctaatacaattcggagta
agggagataaatccatcctcagtggccaaggtcctgggtatgatggcaaggaccccagca
ggactagatggtcaaaatgttccacagtcaaacatgtcctcgggctggggagaagtgggc
gacaaaggcgacaaaccagggctgaacacttggaacgtggaagtctttgtcacagttata
caagacctggccccacactttaactggcgagatgtagtggcagagctggatcatcccaca
ttcctcgttgtgaataagaagggtttgcggatcctacttcaggggttgaatcgaggacta
caggacatgtttccagtagagtacatctacagaccgtggaaaaacacagagggacagctg
tctttcattgtgcagtctctaaggaaccctgatgttttctgttttgctgactacccttgt
cataccgttgtgatagacatactgaaatcttctcctgatgaggacaacagggagattgtc
acatggaaatcactagatttagtagagactttgctgagactgtcagactccggacactac
cagactgtatcagaactttttaagattcccatccagaactgcccagatatgttggtgtta
gcactgctacagatatcgccttcttggaacacccttaagcaggaattgatatccacactg
atgcccatcttcctgggtaaccactccaactcggcagtggtgctgcactatgcctggcac
tgtcaaggtcactccagtaccataaggacactcatcatgcattccatggctgagtggtac
atgcgaggggagcagcatgatcaggccaggctctcaaggattctagatgttgctcaggac
ttaaaggcattatcaatgctactgaatgcaactccatttgcctttgtgattgaccttgcc
tgtttggcctccagaagagaatatttgaaattagacaagtggctttctgacaaaatacga
gaacatggggagccttttattcagacctgtgtgaattttctgaagcgtagatgtccacag
ctggttggcggactctcaaaagacgagaatcagccccagatgaagagccagatgttacca
gcagaaacaatagctaccatgttgtcctgtctgcagcaatgtgcaagaattagtaatctc
agaagccaagtgtctcaggaattgtcggaggccattctgaccatggtgcccaatgctgca
ctgatcataaataaagccagacaagctgccccaggggtggtaggaccgggacccaaagcc
atgcctaccatacccccaccctccagcaacccattggatccacttggtgagagcagcaat
cagctgggaatacccaaatcctggcaaatgggtgctgttgggaactcaggctttcctcag
ggtttggcagcacccctgacctctaccacaaccccgggatccccagccaagccaggattc
caaccaatctcgcagccctcgtctgtagcaggacttcagggcattagttcacagctacag
agtttatctattcaaaatcctttggcacccccaagaaatccaggaatcaatacactggtg
ggacagggcatgttaaaacccacacctccacctggggcaccccctcaaccccaacccaca
ccacctaccctgggtcagcagcagtccatggggccacaggctgttgtcaggccagtaggt
cagactgctggggacatctccagcatattccctgatatccaacaacagttctcaaaggaa
gtggaagatgaggccaattcttacttccagaggatttacaaccagccccccacacctacc
atgtccatcgatgaagtgctagacatgttgaagagattcaaagattctcctgacaaaaaa
gagaaagatgtttacgagtgcatgctgaggaacttgtttgaagagtaccggtttttccct
cagtatccagagagagagctgcacactactgctgtgctgtttgggggaatcattgagaaa
ggattagcaacgtatatggcattgggaattgctctgagatatgtgcttgaggctctgaaa
aaacaacacgcttccaaaatgtattattttggactagcagcattggacaggttcaaaacc
agattaaaggattatcctcagtattgtcaacatctggccgctatcccacattttcaccag
tttccacagcatctcattgagtatgtgaagtatggatctcagtctcaagaacccccacag
cagcctgtatcctcccgaagtattacccccacagtgggaggtctgggcctgactggcctg
cagacaggacccatggggctgattccaccgtccggcgcccccatccccagcatcgcaggt
tctagtcaagagggtgttcccactaccacggtgtctacacctgtccccacatcacaacct
cctgccaaatctctaccaaagccctccattgctagtgctacaaacatagacacactgttg
gcaggacaagggaaggaggagttctccgttccaccggagaccgtccaagacaaagtcttc
tttatcttcaacaatctctccttagccaacatggctcagaagactgaagagtacaaaaaa
gaagtaacagaggaatatcttccttgggctgcccagtatctggtgatgaaaagagccagc
attgaaccaaatttccatactctgtatgccaattttgttgatgctataaatcttcccaaa
cttacaacattagttactagggaaaccttcaggaacatcagggtattgcttagaagtgat
aaaggtgatgcaaatttctcagacagaacactattaaaaaatctgggtcattggcttgga
atgctaaccttggctaaaaacaaaccaattctgcaaatagacatagatctgaaaggtctg
ttgtatgaggcctaccacaaaggctccagagatctgctctatgttgtcccctttgctgca
aaggttctggagtcttgtgctaaaagcaaggttttcaaaccacccaatccatggacaatg
gcaattatgaatgctttagctgaactgcatcaggaaccagacttgaaattgaacttgaaa
tttgaaatagaagtgctatgtaaaacactgaatattgacttgggagaactgaagccagga
aattacttgaaagacaccatcagacttcagactcatgagcctcagttgtctactgtcaaa
cctgtgatccagccagtggtggtgaccccccagcccgatccgtccctgatactggcggcc
tcaacgcccacagcagtgaccaccaccaccaccgtcacaaccaccactgccgccccctcc
agtggaacccccaatctgcctccaaggccacagtttgcttatgaggacatcaatactaac
aactttgccacactggctaaccagatcctcatcagtggacaggcaaccctgttacaaacc
cagccacagttgaagcctctggtgaagatggcagtggagaaatcggtgcaagagttgatg
ccccctgtggtggaaagaacaaacaaaatcacactcacaacatgtgaacaagtcatcaaa
aaagactttgcattagaccctgaggagaccagaatgagagcagcagctcatcacatgatc
agaaacatgacctctgccctggctctcattacatcacgggagcccctgtatcacagcatt
gcctccaaccttaggagtgcttttatgaattcacttagactcactgcagagacagccagc
gccagggacaaagaggcaatagaacaagctgccactgtgttggccacagataatgcggag
ttagcttgtgtcttcattcagaaaactgctgtagagagggcaatcccagaaatggacaaa
agattggccacagagtatgaacttcgtaaacatgctagaaacgaggggcgacgctattgt
gatcctggtgtacttacatatcaagccgagagaatgcctgaacagatccgactaaaggta
ggaggagtcacacccgctcagatctcagtgtacgaagaatttgctcacaacatcccagga
tttttacctacaaatgaaactcctcaagcacacccaggagttactaaacctgtacctgtt
cagccagatgaaatttcacagatgttggagaagatcgggagagacatagaacaagtgctg
caaaactttatggtgcctccctccaatcctcttggcagtcagctgcacaaagtgctagat
gctgtgttatatgccaggaacagtagagagattggctcaattgaaactctgctccagaag
actgtgaatggattgatggaactgtataccaacaacacctcggaacaggagctcatgagt
cgcttccgagactgccacattctggttctcaagtgcttacaggacccacgggcatatggc
tcagggtggctgaagaaacaggtgactcgtgctttagtggagcgcagtgacgatcacaaa
tataacatagaggctttggattgtctcatccgtaaccagctggtgaatctgccacagtat
gacatgtacttggttcagctcatggagaatggcatgaattacatggcagtagcttttgcc
atgcagctcattcaaagatactgcatcagtgacaaacacggggcaattctaacagagact
gattttgccaataccatagaaggcttgaatgcaatctcaactagatcaatcagtccaccg
gaagggctgcagacactgctggacagcctgcgtggttccagtagtggagggaacagcagt
ggcagtgctcccaatacagatttcattatcatggaccagaatgctgctctgaaagctgcc
tcaggaatgatgcacaccggaatcatccaggccagggacattgatggagaccccccaggt
cttcacgagaaggcagagtatctcctcagggagtgggtcaacatgtaccactcccctgca
gctggaagagatagcactaaggctttcaccgccttcgttcaacagatgcatcaacagggt
attctgaagaatgatgacgtgatcactcgctttttccgactgtgctcggagatgtgtgtg
gacctatgctaccgagccatgggagaggctacaggcacaccccccactaaccaagctctg
atcagagccaagtgtttctatactctggatgcttttgtccgtctcattgccttactgatc
aaacactcgggggataatgcgaacaccgtaactaaaatcaatctcctcaataaggtgctt
ggaattgtggctggggtgttacttcaagaccacattgtgagaatgtcagaattccaacag
ctgccctatcacaggatcttcatcatgctcttcattgagctgaatgctccagaacacatt
ctagaaaacatcaactaccaagttctcactgcattctgcaacaccttccatgtgttgaga
cctgccaagtccccagggttttcctacgcatggctggagtttatctcgcaccgtgtcttc
attgggaggatgctggctatcacaccccagcagaaggtcagtgaaggctggggaatgtac
gctcagttgttgattgatctattcaagttcctagcgcctttcctaaggaatgctgatctc
acaaaaccgactcagatgttatacaagggaacattgcgggttttgctggtcctgctacat
gacttccctgaattcctctgtgattaccattatggattctgtgatgtcatcccaccaaac
tgtgttcagatgcgtaacttgatactgagtgcttttccgcgcaatatgaggcttccagac
cctttcacaccaaacctgaaggtggacatgttggctgacatttcccatccacctcgcatt
ctcatcaactttgcaagcaaaatacagcctgctcagtttaagaaggatttggattcgtac
ttgaaatcaaggtctcccgtgacgtttgtctcagacttgagaagctatttgcagtccagt
gagccaggaactcggtacaacatacaactgatgaatgccttggttctgtatgtgggaact
caagctatccagttcatccatggaaaaggcctgactcctagcatgagcactattgctcac
tctgcacacatggacatattccagaacttggcagtggctttagatactgagggtcgctac
ctgtttttgactgccatagccaatcagttaaggtatcccaacagccatacccactacttc
agctgtaccctactgtatctgtttgccgaggccaatacagagtcaatccaggagcagata
accagagtgttgttggagagactgattgtaaacagacctcacccctggggacttctcatc
actttcattgagctcatcaagaacccgcagtttaagttctggaaccatgagtttgtgcat
tgtgcaccagagatagagaagttatttgaatcagtagccagatcctgcatgcaacctaaa
caaaatcaacaagccacaactggtttacgagaagcagacaccagtgaaatgcactag
DBGET
integrated database retrieval system
