Crassostrea virginica (eastern oyster): 111134434
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Entry
111134434 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111134434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111134434
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111134434
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111134434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
CNOT1_HEAT
DUF3819
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
111134434
NCBI-ProteinID:
XP_022339143
UniProt:
A0A8B8EI62
LinkDB
All DBs
Position
5:complement(5915226..5939254)
Genome browser
AA seq
2435 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFKSSVAEISHLVCQHGPEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGNLLGKPNFVSTLCYAIDNPLHHQKSLKPSSQLFTQVSRVLK
LTRVQEVVFGLSLLNSSNSETRNYSVGFVKQKLPDLIKAYVDAEGGLRQEGGLQDVPIEV
IHLLLSNLFKCKDNFGIGSEQKEIFIKTLQKDFPVEGVPVILGPLLYSEAEELSVEKLSD
TSAMPKTALEASLADMILEAGYSCTISVEECRGNLIQFGVREINPSSVAKVLGMMARTPA
GLDGQNVPQSNMSSGWGEVGDKGDKPGLNTWNVEVFVTVIQDLAPHFNWRDVVAELDHPT
FLVVNKKGLRILLQGLNRGLQDMFPVEYIYRPWKNTEGQLSFIVQSLRNPDVFCFADYPC
HTVVIDILKSSPDEDNREIVTWKSLDLVETLLRLSDSGHYQTVSELFKIPIQNCPDMLVL
ALLQISPSWNTLKQELISTLMPIFLGNHSNSAVVLHYAWHCQGHSSTIRTLIMHSMAEWY
MRGEQHDQARLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWLSDKIR
EHGEPFIQTCVNFLKRRCPQLVGGLSKDENQPQMKSQMLPAETIATMLSCLQQCARISNL
RSQVSQELSEAILTMVPNAALIINKARQAAPGVVGPGPKAMPTIPPPSSNPLDPLGESSN
QLGIPKSWQMGAVGNSGFPQGLAAPLTSTTTPGSPAKPGFQPISQPSSVAGLQGISSQLQ
SLSIQNPLAPPRNPGINTLVGQGMLKPTPPPGAPPQPQPTPPTLGQQQSMGPQAVVRPVG
QTAGDISSIFPDIQQQFSKEVEDEANSYFQRIYNQPPTPTMSIDEVLDMLKRFKDSPDKK
EKDVYECMLRNLFEEYRFFPQYPERELHTTAVLFGGIIEKGLATYMALGIALRYVLEALK
KQHASKMYYFGLAALDRFKTRLKDYPQYCQHLAAIPHFHQFPQHLIEYVKYGSQSQEPPQ
QPVSSRSITPTVGGLGLTGLQTGPMGLMPPSGAPIPSIAGSSQEGVPTTTVSTPVPTSQP
PAKSLPKPSIASATNIDTLLAGQGKEEFSVPPETVQDKVFFIFNNLSLANMAQKTEEYKK
EVTEEYLPWAAQYLVMKRASIEPNFHTLYANFVDAINLPKLTTLVTRETFRNIRVLLRSD
KGDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDIDLKGLLYEAYHKGSRDLLYVVPFAA
KVLESCAKSKVFKPPNPWTMAIMNALAELHQEPDLKLNLKFEIEVLCKTLNIDLGELKPG
NYLKDTIRLQTHEPQLSTVKPVIQPVVVTPQPDPSLILAASTPTAVTTTTTVTTTTAAPS
SGTPNLPPRPQFAYEDINTNNFATLANQILISGQATLLQTQPQLKPLVKMAVEKSVQELM
PPVVERTNKITLTTCEQVIKKDFALDPEETRMRAAAHHMIRNMTSALALITSREPLYHSI
ASNLRSAFMNSLRLTAETASARDKEAIEQAATVLATDNAELACVFIQKTAVERAIPEMDK
RLATEYELRKHARNEGRRYCDPGVLTYQAERMPEQIRLKVGGVTPAQISVYEEFAHNIPG
FLPTNETPQAHPGVTKPVPVQPDEISQMLEKIGRDIEQVLQNFMVPPSNPLGSQLHKVLD
AVLYARNSREIGSIETLLQKTVNGLMELYTNNTSEQELMSRFRDCHILVLKCLQDPRAYG
SGWLKKQVTRALVERSDDHKYNIEALDCLIRNQLVNLPQYDMYLVQLMENGMNYMAVAFA
MQLIQRYCISDKHXAILTETDFANTIEGLNAISTRSISPPEGLQTLLDSLRGSSSGGNSS
GSAPNTDFIIMDQNAALKAASGMMHTGIIQARDIDGDPPGLHEKAEYLLREWVNMYHSPA
AGRDSTKAFTAFVQQMHQQGILKNDDVITRFFRLCSEMCVDLCYRAMGEATGTPPTNQAL
IRAKCFYTLDAFVRLIALLIKHSGDNANTVTKINLLNKVLGIVAGVLLQDHIVRMSEFQQ
LPYHRIFIMLFIELNAPEHILENINYQVLTAFCNTFHVLRPAKSPGFSYAWLEFISHRVF
IGXMLAITPQQKGWGMYAQLLIDLFKFLAPFLRNADLTKPTQMLYKGTLRVLLVLLHDFP
EFLCDYHYGFCDVIPPNCVQMRNLILSAFPRNMRLPDPFTPNLKVDMLADISHPPRILIN
FASKIQPAQFKKDLDSYLKSRSPVTFVSDLRSYLQSSEPGTRYNIQLMNALVLYVGTQAI
QFIHGKGLTPSMSTIAHSAHMDIFQNLAVALDTEGRYLFLTAIANQLRYPNSHTHYFSCT
LLYLFAEANTESIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWNHEFVHCAP
EIEKLFESVARSCMQPKQNQQATTGLREADTSEMH
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagactctttatcatttgctttggctgaaataagttattcagtggccaatcta
acgaagaaaaattttaaatctagtgtcgctgaaataagtcatcttgtttgtcaacacggc
ccagaggcagatcgacatttgtttcgctgccttttctctcatgtagactttagtggtgat
ggtagaagcagtggcaaggattttcatcagacacagtttttgatacaagaatttggaaat
ctactagggaaaccaaattttgtatcgactctctgttacgctattgacaatcctcttcat
catcaaaagagtttgaaaccatcatcacagctctttactcaagtcagtcgtgtcttgaag
ctgacacgagttcaagaggtcgtgttcggattatctctccttaattcatcgaactctgaa
accaggaactattctgtcgggtttgttaaacaaaagttgcctgatctcatcaaggcctat
gttgatgcagagggtggtttaagacaagaaggaggactgcaggacgttcccattgaagtc
attcaccttttgttatcaaatctgtttaaatgtaaagacaactttggaataggatcagaa
caaaaagaaattttcatcaaaaccctccagaaagactttccagttgaaggagtccctgtg
attttgggaccgttgttatattctgaagcagaggaattatctgtagaaaagttatcagac
acatcagccatgcctaaaactgcattggaggcttccctggctgatatgattctggaggct
ggttacagctgtactataagtgttgaagaatgtcgtggaaatctaatacaattcggagta
agggagataaatccatcctcagtggccaaggtcctgggtatgatggcaaggaccccagca
ggactagatggtcaaaatgttccacagtcaaacatgtcctcgggctggggagaagtgggc
gacaaaggcgacaaaccagggctgaacacttggaacgtggaagtctttgtcacagttata
caagacctggccccacactttaactggcgagatgtagtggcagagctggatcatcccaca
ttcctcgttgtgaataagaagggtttgcggatcctacttcaggggttgaatcgaggacta
caggacatgtttccagtagagtacatctacagaccgtggaaaaacacagagggacagctg
tctttcattgtgcagtctctgaggaaccctgatgttttctgttttgctgactacccttgt
cataccgttgtgatagacatactgaaatcttctcctgatgaggacaacagggagattgtc
acatggaaatcactagatttagtagagactttgctgagactgtcagactccggacactac
cagactgtatcagaactttttaagattcccatccagaactgcccagatatgttggtgtta
gcactgctacagatatcgccttcttggaacacccttaagcaggaattgatatccacactg
atgcccatcttcctgggtaaccactccaactcggcagtggtgctgcactatgcctggcac
tgtcaaggtcactccagtaccatcaggacactcatcatgcattccatggccgagtggtac
atgcgaggggagcagcatgatcaggccaggctctcaaggattctagatgttgctcaggac
ttaaaggcattatcaatgctactgaatgcaactccatttgcctttgtgattgaccttgcc
tgtttggcctccagaagagaatatttgaaattagacaagtggctatctgacaaaatacga
gaacatggggagccttttattcagacctgtgtgaattttctgaagcgtagatgtccacag
ctggttggcggactctcaaaagacgagaatcagccccagatgaagagccagatgttacca
gcagaaacaatagccaccatgttgtcctgtctgcagcaatgtgcaagaattagtaatctc
agaagccaagtgtctcaggaattgtcggaggccattctgaccatggtgcccaatgctgca
ctgatcataaataaagccagacaagctgcccctggggtggtaggaccgggacccaaagcc
atgcctaccatacccccaccctccagcaacccattggatccacttggtgagagcagcaat
cagctgggaatacccaaatcctggcaaatgggtgctgttgggaactcaggctttcctcag
ggtttggcagcacccctgacctctaccacaaccccgggatccccagccaagccaggattc
caaccaatctcgcagccctcgtctgtagcaggacttcagggcattagttcacagctacag
agtttatctattcaaaatcctttggcacccccaagaaatccaggaatcaatacactggtg
ggacagggcatgttaaaacccacacctccacctggggcaccccctcaaccccaacccacg
ccacctaccctgggtcagcagcagtccatggggccacaggctgttgtcaggccagtaggt
cagactgctggggacatctccagcatcttccctgatatccaacaacagttctcaaaggaa
gtggaagatgaggccaattcttacttccagaggatttacaaccagccccccacacctacc
atgtccatcgatgaagtgctagacatgttgaagagattcaaagattctcctgacaaaaaa
gagaaagatgtttacgagtgcatgctgaggaacttgtttgaagagtaccggtttttccct
cagtatccagagagagagctgcacactactgctgtgctgtttgggggaattattgagaaa
ggattagcaacgtatatggcattgggaattgctctgagatatgtgcttgaggctctgaaa
aaacaacacgcttccaaaatgtattattttggactagcagcattggacaggttcaaaacc
agattaaaggattatcctcagtattgtcaacatctggccgctatcccacattttcaccag
tttccacaacatctcattgagtatgtgaagtatggatctcagtctcaagaacccccacag
cagcctgtatcctcccgaagtattacccccacagtgggaggtctgggcctgactggcctg
cagacaggacccatggggctgatgccaccgtccggcgcccccatccccagcatcgcaggt
tctagtcaagagggtgttcccactaccacggtgtctacacctgtccccacatcacaacct
cctgccaaatctctaccaaagccctccattgctagtgctacaaacatagacacactgttg
gcaggacaagggaaagaggagttctccgttccaccggagaccgtccaagacaaagtcttc
tttatcttcaacaatctctccttagccaacatggctcagaagactgaagagtacaaaaaa
gaagtaacagaggaatatcttccttgggctgcccagtatctggtgatgaaaagagccagc
attgaaccaaatttccatactctgtatgccaattttgttgatgctataaatcttcccaaa
cttacaacattagttactagggaaaccttcaggaacatcagggtattgcttagaagtgat
aaaggtgatgcaaatttctcagacagaacactattaaaaaatctgggtcattggcttgga
atgctaaccttggctaaaaacaaaccaattctgcaaatagacatagatctgaaaggtctg
ttgtatgaggcctaccacaaaggctccagagatctgctctatgttgtcccctttgctgca
aaggttctggagtcttgtgctaaaagcaaggttttcaaaccacccaatccatggacaatg
gcaattatgaatgctttagctgaactgcatcaggaaccagacttgaaattgaacttgaaa
tttgaaatagaagtgctatgtaaaacactgaatattgacttgggagaactgaagccagga
aattacttgaaagacaccatcagacttcagactcatgagcctcagttgtctactgtcaaa
cctgtgatccagccagtggtggtgaccccccagcctgatccgtccctgatactggcggcc
tcaacgcccacagcagtgaccaccaccaccaccgtcacaaccaccactgctgccccctcc
agtggaacccccaatctgcctccaaggccacagtttgcttatgaggacatcaatactaac
aactttgccacactggctaaccagatcctcatcagtggacaggcaaccctgttacaaacc
cagccacagttgaagcctctggtgaagatggcagtggagaaatcggtgcaagagttgatg
ccccctgtggtggaaagaacaaacaaaatcacactcacaacatgtgaacaagtcatcaaa
aaagactttgcattagaccctgaggagaccagaatgagagcagcagctcatcacatgatc
agaaacatgacctccgccctggctctcattacatcacgggagcccctgtatcacagcatt
gcctccaaccttaggagtgcttttatgaattcacttagactcactgcagagacagccagc
gccagggacaaagaggcaatagaacaagctgccactgtgttggccacagataatgcggag
ctagcttgtgtcttcattcagaaaactgctgtagagagggcaatcccagaaatggacaaa
agattggccacagagtatgaacttcgtaaacatgctagaaacgaggggcgacgctattgt
gatcctggtgtacttacatatcaagccgagagaatgcctgaacagatccgactaaaggtt
ggaggagtcacacccgctcagatctcagtgtacgaagaatttgctcacaacatcccagga
tttttacctacaaatgaaactcctcaagcacacccaggagttactaaacctgtacctgtt
cagccagatgaaatttcacagatgttggagaagatcgggagagacatagaacaagtgctg
caaaactttatggtgcctccctccaatcctcttggcagtcagctgcacaaagtgctagat
gctgtgttatatgccaggaacagtagagagattggctcaattgaaactctgctccagaag
actgtgaatggattgatggaactgtataccaacaacacctcggaacaggagctcatgagt
cgcttccgagactgccacattctggttctcaagtgcttacaggacccacgggcatatggc
tcagggtggctgaagaaacaggtgactcgtgctttagtggagcgcagtgacgatcacaaa
tataacatagaggctttggattgtctcatccgtaaccagctggtgaatctgccacagtat
gacatgtacttggttcagctcatggagaatggcatgaattacatggcagtagcttttgcc
atgcagctcattcaaagatactgcatcagtgacaaacacngggcaattctaacagagact
gattttgccaataccatagaaggcttgaatgcaatctcaactagatcaatcagtccaccg
gaagggctgcagacgttgctggacagcctgcgtggttccagtagtggagggaacagcagt
ggcagtgctcccaatacagatttcattatcatggaccagaatgctgctctgaaagctgcc
tcaggaatgatgcacaccggaatcatccaggccagggacattgatggagaccccccaggt
cttcacgagaaggcagagtatctcctcagggagtgggtcaacatgtaccactcccctgca
gctggaagagatagcactaaggctttcaccgccttcgttcaacagatgcatcaacagggt
attctgaagaatgatgacgtgatcactcgctttttccgactgtgctcggagatgtgtgtg
gacctatgctaccgagccatgggagaggctacaggcacaccccccactaaccaagctctg
atcagagccaagtgtttctatactctggatgcttttgtccgtctcattgccttactgatc
aaacactcgggggataatgcgaacaccgtaactaaaatcaatctcctcaataaggtgctt
ggaattgtggctggggtgttacttcaagaccacattgtgagaatgtcagaattccaacag
ctgccctatcacaggatcttcatcatgctcttcattgagctgaatgctccagaacacatt
ctagaaaacatcaactaccaagttctcactgcattctgcaacaccttccatgtgttgaga
cctgccaagtccccagggttttcctacgcatggctggagtttatctcgcaccgtgtcttc
attgganggatgctggctatcacaccccagcagaagggatggggaatgtacgctcagttg
ttgattgatctattcaagttcctagcgcctttcctaaggaatgctgatctcacaaaaccg
actcagatgttatataagggaacattgcgggttttgctggtcctgctacatgacttccct
gaattcctctgtgattaccattatggattctgtgatgtcatcccaccaaactgtgttcag
atgcgtaacttgatactgagtgcttttccgcgcaatatgaggcttccagaccctttcaca
ccaaacctgaaggtggacatgttggctgacatttcccatccacctcgcattctcatcaac
tttgcaagcaaaatacagcctgctcagtttaagaaggatttggattcgtacttgaaatca
aggtctcccgtgacgtttgtctcagacttgagaagctatttgcagtccagtgagccagga
actcggtacaacatacaactgatgaatgccttggttctgtatgtgggaactcaagctatc
cagttcatccatggaaaaggcctgactcctagcatgagcactattgctcactctgcacac
atggacatattccagaacttggcagtggctttagatactgagggtcgctacctgtttttg
actgccatagccaatcagttaaggtatcccaacagccatacccactacttcagctgtacc
ctactgtatctgtttgccgaggccaatacagagtcaatccaggagcagataaccagggtg
ttgttggagagactgattgtaaacagacctcacccctggggacttctcatcacgttcatt
gagctcatcaagaacccgcagtttaagttctggaaccatgagtttgtgcattgtgcacca
gagatagagaagttatttgaatcagtagccagatcctgcatgcaacctaaacaaaatcaa
caagccacaactggtttacgagaagcagacaccagtgaaatgcactag
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integrated database retrieval system
