Crassostrea virginica (eastern oyster): 111134900
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Entry
111134900 CDS
T09197
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03030
DNA replication
cvn03410
Base excision repair
cvn03420
Nucleotide excision repair
cvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111134900
03410 Base excision repair
111134900
03420 Nucleotide excision repair
111134900
03430 Mismatch repair
111134900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvn03032
]
111134900
03036 Chromosome and associated proteins [BR:
cvn03036
]
111134900
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111134900
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111134900
DNA Replication Termination Factors
ELG1-RFC complex
111134900
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111134900
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111134900
Check point factors
HRAD17(Rad24)-RFC complex
111134900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
nSTAND_NTPase5
AAA_lid_RFC1
AAA_14
AAA_16
Mg_chelatase
Viral_helicase1
AAA_11
nSTAND3
AAA_assoc_2
RuvB_N
AAA_25
AAA_5
AAA_19
DNAX_ATPase_lid
ABC_tran
AAA_24
AAA_18
AAA_28
AAA_30
MeaB
SLFN-g3_helicase
DUF815
MipZ
RNA_helicase
AAA_23
NTPase_1
FtsK_SpoIIIE
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
111134900
NCBI-ProteinID:
XP_022340145
UniProt:
A0A8B8E5M2
LinkDB
All DBs
Position
5:complement(30451078..30460383)
Genome browser
AA seq
342 aa
AA seq
DB search
MADQEMEIDETPTSSKSHHHHEQPWVEKYRPVKLHDIVGNEETISRLEVFAKDGNVPNVI
IAGPPGTGKTTSILCLARAMLGPSYRDAVLEMNASNDRGIDVVRNKIKMFAQQKVTLPKG
RHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKL
TDAQVLKRLLEVCEAESVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNSENVFK
VCDEPHPMLIQDMLQHCVNGNVEEAYKTMAHLWKLGYSAEDIITIIFRVCKNQSIPEYLK
LEFIKEIGYTHMRIAEGVQSLLQMSALLARLCKKSAVPGIKG
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcaagaaatggaaatcgacgaaactccaacttcatcaaaatcacaccatcac
cacgaacaaccatgggttgaaaagtacagacctgtaaaactccacgatatagttggtaac
gaagaaactataagtcgactagaagtgtttgcaaaggatggaaacgttcctaatgttata
attgctgggccccctggaactggtaagactacaagtatcttgtgtctggcaagagcaatg
ttaggtccttcgtacagggatgctgttttggaaatgaacgcatctaatgacagaggtatt
gatgttgtgaggaataaaattaaaatgttcgctcagcagaaagttaccctgccaaaggga
agacataaaatcatcattttggatgaagcagacagtatgacagatggtgcccagcaggct
ctgaggagaacaatggagatctactccaaaaccacaagatttgctctggcttgcaatgca
tcagataaaatcattgaacccattcagtcccggtgtgctgttctgcggtactccaagctg
actgacgcccaggtgttgaaacggttactggaggtgtgtgaggcagaatcggtcagctac
acagatgacggtctggaggccattgtgttcacagcccaaggagacatgagacaggcacta
aacaacttgcagtcaacatttcaaggttttggtcatgtcaacagtgaaaatgtcttcaag
gtgtgtgatgagccgcacccaatgttgattcaggacatgttacagcactgtgtgaacggc
aacgtagaggaagcttataagaccatggctcatctctggaaactaggatattcagcagag
gacattatcaccatcatcttcagagtgtgcaaaaatcaaagtattccagaatacctgaaa
cttgaatttataaaggaaataggatatactcacatgagaattgcagaaggtgttcaatct
ttgttacaaatgtcagcactgctggcaagactttgtaaaaaatctgctgtgcctgggatt
aagggataa
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