Candidatus Atelocyanobacterium thalassa: UCYN_05880
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Entry
UCYN_05880 CDS
T01159
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UCYN_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyu03021
]
UCYN_05880
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_05880
Enzymes [BR:
cyu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UCYN_05880
Transcription machinery [BR:
cyu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UCYN_05880
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UCYN_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Endosulfine
Motif
Other DBs
NCBI-ProteinID:
ADB95312
UniProt:
D3EPB2
LinkDB
All DBs
Position
662273..665584
Genome browser
AA seq
1103 aa
AA seq
DB search
MNNLIYNYNLLPDLIEIQHLSFRWFLEEGLIEELNSFSPITDYVGKLELHFLGNNYKLKE
PKHDVDEAKRRDSTYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAERV
IVNQIVRSPGVYYKAETDKNGRRTYSASLIPNRGAWLKFETDKNGLVWVRIDKTRKLSAQ
VLLKAIGLNDNEIFDSLRHPEFYQRTLEKEGNPTEEDALLELYRKLRPGEPPTVSGGQQL
LESRFFDSKRYDLGRVGRYKLNKKLRLTAPDTMRVLRQQDILSAIDYLINLEFDIGTVDD
IDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESDSLTPASLVNPKPLVAAIKE
FFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLARERAGFAVRDIHPSHHGRICPVETP
EGPNAGLIGSLATYARVNQYGFIETPYYRVENGRVRRDLDPTYLTADEEDDLRVAPGDIS
TDTDGNIIGSVVPTRYRQEFFITSPDQVDFVAVSPVQIISVATSMIPFLEHDDANRALMG
SNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRTEGIVSYVDANKIRVKVTGPENH
DKVGQEIQYILQKYQRSNQDTCLNQRPLVYVGEDVVPGQVLADGSATEGGELALGQNILV
AYMPWEGYNYEDAILISERLVFDDIYTSIHVEKFEIEARQTKLGPEEITREIPNIGEDSL
KNLDEQGIIHIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPN
GEKGRVVDVRVFTREQGDELPPGANIVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPI
EDMPYLPDGRPMDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEESS
RKTVHGLLAKAAEKPRKNWVYENNHPGKIAVYDGRTGEKFDRPITVGQAYMLKLVHLVDD
KIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDMEGR
NEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVHKVETADDGTSRDVEVDLMIDS
QRRSPNRPTYESLTTEDLEAEEV
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttgatctataactacaacctcctccccgatcttatcgaaattcagcattta
agttttcgttggtttcttgaagaaggattaatcgaagaacttaatagcttttctcctatt
actgattatgtaggtaagctagagctacattttttaggaaacaactataaattaaaagag
ccgaaacatgatgtcgatgaagcaaaacgccgagacagtacttattcggtacaaatgtat
gttcctactcgtttaattaataaagaaacaggagaaataaaggaacaagaagttttcatt
ggtgatttaccattgatgactgatagaggaacatttattattaatggtgcagaacgagtt
attgttaatcagatagtccgttcaccaggagtatactataaagcagaaactgacaaaaat
ggacggcgtacttattcagcttctttgattcctaatagaggagcttggttaaaatttgaa
actgataaaaatggcttggtatgggttaggatagataaaactcgtaaattatcagctcag
gttcttttaaaggctattgggttaaacgataatgaaatttttgattctttacgtcatcct
gaattctatcaacgaactttggaaaaagaaggcaaccctacagaagaagatgctttacta
gagttgtatagaaaattaagacccggtgaacctcctactgttagtggagggcaacaactt
ctagaatctcgtttctttgatagtaagcgttatgacttaggccgagtaggaagatataaa
cttaataaaaaacttcgcttaactgctccagatacaatgcgtgttttgcgtcaacaagac
attttatctgcaatagattatctaataaacttagaatttgacatcggaactgtagatgat
attgatcatctaggaaatcgtagagtacgctcagttggagaattgctccaaaaccaagtt
agggttggcttaaatcgtctcgaaagaattattagagaacgaatgacagtgagtgaatct
gatagcttaacaccagcttctctagttaatcctaagcctttagtagctgcaataaaagag
ttttttggttcatctcaattatctcagttcatggatcaaactaatccactagctgaatta
actcataaaaggcgtatatcggctttaggtcctggaggtcttgctagagaaagagctggt
tttgcagtcagagatattcacccttctcatcatggacgtatttgtcctgttgaaactcct
gaaggtcccaatgctggtttaattggttctttagctacttatgctagggtcaatcaatat
ggctttattgaaactccttattatcgagtagagaatgggcgagttagaagagatctagat
ccaacttatcttaccgctgatgaagaagatgacctcagagttgcaccaggtgacattagt
actgatacagatggtaatataatagggagtgtagttcctacacgttatcgtcaagaattt
tttataactagtcctgatcaagtagactttgtagctgtttctcctgtgcagattatttct
gttgcaacttctatgatacctttcctagagcatgatgacgcaaaccgcgctctaatgggc
tctaacatgcaaagacaagcagttcctttactacgtccagaacggcctcttgttggcaca
ggtcttgaagcccaggccgctagagactctgggatggttattgtatctagaactgaagga
attgttagttatgttgatgctaataagatacgagtaaaagtcactggcccagaaaatcat
gataaagttggtcaagagatacagtatatcttacaaaaatatcaacgttctaatcaagat
acttgcctaaaccaaagaccactagtatatgtcggtgaagatgtagtaccaggacaagtt
ttggcagatggttctgctactgaagggggcgaattagctctcggtcaaaatattctagta
gcatatatgccttgggagggatataactatgaagatgctattttgattagtgagcgttta
gtgttcgatgacatatatacaagcattcatgtagaaaaattcgaaatcgaagctcgtcaa
acaaaattaggtccagaagagatcacccgagaaattcctaatatcggagaagattctctt
aagaacttagatgaacaagggattattcatattggagcatgggtagaagcaggagatatc
cttgtaggaaaggtaactccaaaaggagaatcggatcagccaccagaagaaaaactactt
cgagccatcttcggagaaaaagcacgagatgtaagagataattcgttaagggttcctaac
ggtgaaaaaggaagagtagtagatgtaagagtatttacaagagagcagggtgatgagtta
cctccaggagcgaatatagttgttagagtttatgtagctcagaaacgtaaaattcaagtt
ggcgataaaatggcagggcgtcatggaaataaaggaattatttcaagaattttacctatt
gaagatatgccatatcttcctgacggaagacctatggatatagtattaaatcctttaggt
gttccatcgaggatgaatgttggacaagtatttgaatgcctacttggttgggctggagaa
aatttaggagtacgatttaagattactccttttgatgaaatgtatggtgaagaatcatct
cgtaaaactgttcatggcttattagctaaagcagctgagaaacctcgcaagaattgggtg
tatgaaaacaatcatccaggcaagatagctgtttacgatggacgtaccggagaaaaattt
gatcgtcctatcactgtcggccaagcttatatgttaaagctagtgcatctcgtagacgat
aagattcatgcacgttcaacaggtccttattctttggtaactcagcagcctcttggtggt
aaagcccaacaaggtggtcagcgttttggagaaatggaagtatgggctttagaagcatat
ggtgccgcatatacattacaagaattattgacagtaaaatctgatgatatggaaggaaga
aacgaagctttaaatgccatcgtcaaaggaaaacctatacctcgtccagggacaccagaa
tcatttaaggtattaatgagagaactacagtccttaggattagatattgctgtccacaaa
gtagaaactgctgatgatggaacaagtcgagatgtagaagttgatttaatgatcgacagt
caacgccgttcacccaatcgtccaacttatgagtcactgactacagaggatcttgaagca
gaagaggtttaa
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integrated database retrieval system
