Cycloclasticus zancles: CYCME_0738
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Entry
CYCME_0738 CDS
T02780
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cza
Cycloclasticus zancles
Pathway
cza03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cza00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYCME_0738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cza03021
]
CYCME_0738
03400 DNA repair and recombination proteins [BR:
cza03400
]
CYCME_0738
Enzymes [BR:
cza01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYCME_0738
Transcription machinery [BR:
cza03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CYCME_0738
DNA repair and recombination proteins [BR:
cza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CYCME_0738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
HsdM_N
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
AGS39074
UniProt:
S5T6B3
LinkDB
All DBs
Position
728839..732918
Genome browser
AA seq
1359 aa
AA seq
DB search
MAYSYTEKRRIRKTFGRQEGAMETPYLLETQISSYKRFLQSEVAKADELDSVGLHAALGS
VFPITSHTGYAVLEYVSYRLGKPKFDVKECQSRGATYASPLRVQVRLVIYDKDSPAGSKR
VKDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFS
ARVIPYRGSWLDFEFDHKDIVYVRIDRRRKLPATVLLKALEFTNDQIIDMFFEKNVFHLN
KNGLTMELVPERLRGEIVGFDVKVNGKTLIEEGRRVTAKHIRDLSKAGVKQIDVPSEYLI
GKIMATPIVNQETGEIIVDLNEEVTEDNIDDIVHSGATTIETLYVNDLDKGAFISNTLKI
DSTVDQLDALVEIYRMMRPGEPPTKESALKLFQNLFFTLDRYDISTVGRMKFNLRLGREE
ITGPGVLSNEDIIDVLKELISIRNGEGSVDDIDHLGNRRIRSVGEMVENQFRVGLVRVER
AVKERLSIADSEGLMPQEIINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSAL
GPGGLARERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRK
VVDGQLTDQVDFLSAIEEGRFYIAQANAEIDENGRFVEDMVTCRHAEEFAIATADKIDYM
DVSPKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGMERAVAVDSG
VTIVAERGGVIDDVDASRIIVRVNDEETLTGESGVDIYNCTKYTRSNQNTCINQRPLVKP
GDLIAKGDVLADGPSTDMGELALGQNMMVAFMPWNGYNFEDSILISEKVVKEDRLTTIHI
EEKVCVARDTKLGSEEITADIPNVGEGALSKLDESGIVYIGAEVKGGDILVGKVTPKGES
QLTAEEKLLRAIFGEKASDVKDTSLRVPSSMQGTVIDVKVFTRDGVDKDARAIEIEDAEL
ASVKKDLDDQLRIVEGDTFLRVEKLILDKEAVSGPQKLKKGTKVTKEYLSSISNHDWLKI
KFKDEGLNVQLEAVAEQIEQQRIDLNELFEEKRKKITMGDDLQPGVLKMVKVYLAVKRRI
QPGDKMAGRHGNKGVISMIVPEEDMPYMEDGTPVDVVLNPLGVPSRMNVGQVLETHLGWA
AKGLGNEIGKMLEAKANVDKVRKFLDKVYNTSGRKEDLDSFSDDEILELAENLKGGVPMA
TPVFDGASETEVKQMLKLGGRSDTGQVQLYDGRTGEAFDRETTVGYMYMLKLNHLVDDKM
HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTR
MYKNIVDGNHTMDPGMPESFNVLVKEIRALGINIELEQD
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcatatactgagaaaagacgtattcgtaaaacatttggtcgacaagaagga
gcaatggaaacgccttacttgttagaaacacaaattagttcttacaaacgttttcttcaa
tccgaagttgcaaaagcagatgaacttgactctgttggtcttcacgctgcgttaggtagt
gtgtttccaataactagtcataccggttatgctgttttggaatatgtgagttaccgattg
ggtaagcccaagtttgatgttaaagaatgtcaatcacgtggtgctacatatgcatcacca
ttaagagtacaggtcaggcttgtcatatatgataaagactctcctgctggctctaagcgc
gtaaaagatatacgtgagcaagaagtttatatgggtgaattacccttaatgactgataat
ggtacgttcgttattaatggtactgaacgcgttatagtgtcgcagctgcaccgctctcct
ggtgtgttctttgatcatgacaaaggtaagacgcattcatctggaaaattacttttttct
gcccgtgttattccataccgtggttcttggttagactttgaattcgatcataaagatatc
gtatatgtacgtatcgatcgtcgtagaaaattgccggccactgtattacttaaagcgtta
gagtttactaacgatcaaattatagatatgttctttgaaaagaatgtatttcacctaaac
aaaaatggactcacaatggaactcgtgcctgaaaggttacgtggtgaaattgttggtttt
gatgttaaggtcaatggtaaaacccttattgaagaagggcgtagagtaacagctaaacac
attcgtgacttaagcaaagctggtgttaagcaaattgatgtaccgagtgaatacctgatt
ggaaaaattatggctacgcccatagttaaccaagaaacaggtgagattattgtcgatctg
aatgaagaggttactgaagataatatcgacgatattgtacatagcggtgcaacgacaatt
gagacactgtatgtaaatgatcttgataaaggtgcttttatctcaaatacgttgaaaatt
gattcaaccgtagatcagctagatgccttggttgaaatttatcgtatgatgagaccaggt
gagccaccaacgaaagaatcagcgctaaagttattccagaacttgtttttcacattagac
cgttatgacatctcaacagttgggcgaatgaagtttaatcttcgtcttggccgtgaagaa
ataacaggtcctggtgtactgagtaacgaagacattattgatgtacttaaagagctaatt
agtatccgtaatggtgaaggctcagttgatgatattgaccacttgggtaacagacgtatt
cgctctgttggtgagatggttgagaaccaatttagagtcggtttagttcgtgttgaacga
gctgttaaagagcgcctttcaattgcagactctgaaggtttaatgcctcaggaaatcatt
aatgcaaaacctgtagcggctgcgattaaagaattttttggctcaagccaattgtcgcag
tttatggatcaaaataacccgttatcagaaatcacacataaacgtcgtgtttctgcttta
ggcccaggtggtttagctcgtgaaagagcaggttttgaggttcgagatgtgcatgcaact
cattacggtcgagtgtgtcctattgagacacctgaggggccaaatattggtttgatcaac
tcattagctgtttatgcgcgtactaatgagtacggtttcttagaaactccgtatagaaaa
gttgttgatggccaattaactgatcaggttgactttttatcagctattgaagaaggtcgt
ttctatatcgcgcaggcgaatgctgaaattgacgaaaatggccggtttgtagaagacatg
gtgacatgtcgtcatgcagaagagtttgccattgcaacagctgataaaattgactatatg
gatgtatcaccaaaacagattgtatctgttgcggcttctattattcctttcctcgagcat
gatgatgctaaccgtgcgttgatgggctctaatatgcagcgtcaagcagttccaaccctt
aaggcagataagccactggtaggtactggtatggagcgtgctgttgctgttgactcaggg
gtaacaattgttgcagagcgtggtggtgtaattgatgacgttgatgcgtcaagaattatc
gttcgtgttaatgatgaagaaacgttaacaggtgaatcgggtgtagatatttacaattgt
acaaaatacacacgatctaaccaaaacacctgtattaaccaacgtccattggtaaaacca
ggggacttgattgctaaaggtgacgttcttgctgatggtccatcgactgacatgggtgaa
ttagcgcttggtcaaaatatgatggtcgcgtttatgccttggaatggctataactttgaa
gattcgattcttatttctgaaaaagttgttaaggaagatcgcctgactaccattcatatt
gaagaaaaagtctgcgttgcacgagacacgaaattaggctctgaagaaattacagctgat
attccaaatgtaggtgaaggtgcattatctaagcttgatgaatctggaattgtatatatc
ggtgccgaagttaaaggtggcgacattcttgttggtaaagtaacacctaaaggcgaaagt
cagttaactgctgaagaaaaattgttaagggcgatctttggtgaaaaagcttctgacgta
aaagatacttcattacgagttccttcaagcatgcaaggtactgtcatcgatgtaaaagta
tttacacgtgatggagttgataaagatgcacgtgcaattgaaattgaagatgcagaatta
gccagtgttaagaaagaccttgatgatcaattaaggattgttgaaggtgatacgttttta
cgtgttgaaaagcttattttagacaaagaggccgtttctgggccacagaaactgaaaaaa
ggcactaaagttacgaaagaatacctatctagtatttctaatcatgattggttaaaaatt
aaattcaaagatgaagggcttaatgttcaacttgaagcagtagctgaacaaattgaacag
caacgaattgatcttaatgaattatttgaagaaaagcgtaagaaaattacaatgggtgat
gaccttcagccaggtgtattgaaaatggttaaggtgtatctagctgttaaacgacgcatt
caaccgggtgataaaatggcgggtcgtcatggtaacaaaggtgttatctcaatgattgta
cctgaagaagatatgccctatatggaagatggtacccctgtagatgttgtcctaaaccca
ttgggtgttccttcgcggatgaacgttggacaggtgctagaaactcacttagggtgggct
gctaaaggtttaggtaatgaaattggtaaaatgcttgaagcaaaagccaatgtcgataaa
gtgcgtaaatttttagataaagtatataacaccagtggtcgtaaagaagatttagactca
tttagtgatgatgagattctagaattggctgaaaacttaaagggcggtgttccgatggct
acgccagtgtttgatggtgcatcagaaacagaagtgaagcaaatgttgaaacttggtgga
cgttcagacacgggtcaagtgcaactttatgatggccgtacaggtgaagcgtttgataga
gaaacgacggtaggttacatgtatatgctaaagcttaatcacttggttgacgataaaatg
catgctagatcaacaggaccttatagcttagtgactcaacaaccacttggtggtaaagca
caatttggtggccaacgcttcggtgagatggaagtatgggcactagaagcttacggtgca
gcatatactttgcaggaaatgctaacagttaagtctgatgatgtttctggacgtacacga
atgtacaaaaacattgttgatggaaatcatacaatggatccaggaatgccagagtcattt
aacgtgttagttaaagagattagagcgctgggtatcaatatagagttagaacaagattaa
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