Danio aesculapii (panther danio): 130229593
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Entry
130229593 CDS
T11734
Symbol
skic3
Name
(RefSeq) LOW QUALITY PROTEIN: SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
daes Danio aesculapii (panther danio)
Pathway
daes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130229593 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daes03019
]
130229593 (skic3)
Messenger RNA biogenesis [BR:
daes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130229593 (skic3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_17
TPR_8
TPR_11
TPR_12
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
TTC22_N
CABIN1_N
ChAPs
TPR_Psidin_N
TPR_MalT
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Fis1_TPR_C
TPR_15
Coatomer_E
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
130229593
NCBI-ProteinID:
XP_056314453
LinkDB
All DBs
Position
5:complement(54418309..54481392)
Genome browser
AA seq
1579 aa
AA seq
DB search
MESNQVRTSEKMSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVA
ATELQQPDQAQTAYRKASELEPEQLLAWQGLANLYEKSDQADFKAELPKIYQKLITLYET
SDKAKCFEVSKKLVEVYQSEENYLQVARVWRRLIQVRESEEGLEDAELLELWKEMTRLLQ
DTVEDQDNETQQHLISAFERALQMTIDVPSEAHRSLSQDYIKCLSKLPHEVAKLKEVCDA
TLSHYPTHPYPLEALSERYIQTGDCSEEAVSCFNRLSELDPNNSYVHFGLGIKACQDKKY
EDAIKSIGLGLKRMRSSIIGWYNLALAQLKMHKYSDSAISSSQGLKSSVGNADDWTQKLL
RLKLEALVKTGRDQDADEALQILAQISDTKNDPVLLALKGRAYLXKGQKEEAFQVSAELL
SSHPGSVDSLTLKALLHVAKEQHKQAEESFQEALSRSPDNGELFFLLGSLYWNMGEEIRR
DRSKTHTHLLKAAKLDPYLGSVFRLLGHYYREVAKDQGRARGCYKRAFELDPTDAEAGAA
AVDLSMEQGDMDSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRA
DPQDWVCWECLGEAYLNRRSFTAALKAFDKAHILQPTSIYSLYQTAAIKQILGRFKEAAA
EYKQILEKEDYVPALKGLGECLLALAKSALDDYLDGRAVDLIQNAIHYLFRAVKQRPDLS
CLWKLLGDSCTACRTVSPNRAKVLVPGALCGMDPSDQKHKLDQRQLLTLGERCFGRALKL
MPEAPSLWFDLGLNYYHQSRLLSSHYPEEDPQSLLEKALQCVKKAIMLDSANHTYWNALG
VVAMTKGIENFALAQHSFIKSVKAEPNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEP
LYVNCWIGQALIAETVGSYDTMDLFRHTTELSTHTEGVKGYAYCVCSTLLDRSNRDSELY
LYNIVQMNAVSAAQVALSKYTERIQTDPDAFIMLGYLNTHLQLRKQATEAYRRAVELLQA
SAHTDKLSFALRGYGRALSDDGQWEEAVRIYCSTPLEELHDLIGLALACFRIGRLPESIQ
AYEKALAVASTEKEKAYILTALALIQHKLGSMDHAKTLLFKCSMLKEPVQESLQCLCALG
LVNGDITLASATLTELLKLGEPAGGAVEERCLLTCTLLALQGNFSGVHREASRAIHRNPG
NPSLWALLSRLVPQYCPNKADGGAVAGSVACQASLTLGKRALLYSGVNQLASGRHSGEDG
RRNALKTIQRAVLLCPDDPAGWAGLMAACHTENTACFLTGSAPRREDLERAHMALVSEKV
KGLQGEDGLLAQALEGWVLQQAVTGLKLSGQYDQAETLCSQVLSVSPEHPVVFLMLRQVQ
CERLLLSEAGNGIPPAVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYKQSLQ
LASQLGDHSGKISSLLRLSLLALTPCLAGVGVSDWKDLVSEATGEVLKMGKSPVALLFQA
LLQFSVKMGARETRRLLERIVYAPALGGSETMASVARWYLLRHLHAKDDLELIDTLLVKA
TAAGDNRLVDFHRRLYPSS
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtaaccaagttcggacttcagaaaaaatgtccagtaaagaagtgaaagctgag
ctgaaaagtgccagggaagccattaaaaataaagagtttaaagaggctttgaagcactgt
aaggctgttctgaagcttgagaagaataactataatgcctgggtgtttattggagtggca
gccacagaacttcagcagccggatcaagcacagactgcatacagaaaggcctcggagctt
gagccagagcagctgctggcatggcagggtttagcaaatctgtatgaaaaaagtgaccaa
gcagatttcaaagctgagcttcccaagatttaccagaaacttattacgctatatgaaacc
tcagacaaagcaaaatgtttcgaagtaagcaagaagttggtggaggtttatcagtcagaa
gagaactatctacaggtggccagagtatggcgaaggttaatccaggtgagagagagtgag
gaagggctggaggacgcagagctgctggagctgtggaaggagatgaccagactcctgcag
gacactgttgaggaccaggacaatgagacacagcagcacctgatatctgcatttgaacga
gctttgcaaatgaccatagatgtgcccagtgaagcccacaggagcctttcacaggattac
attaaatgtctttcaaagcttcctcatgaggtggccaagctaaaggaagtttgtgatgct
accctgtcccactatcccacacacccctaccctctagaggccctcagtgagcgctacatc
caaacaggtgactgcagtgaggaagctgtttcctgtttcaatcgcctctcagaactggat
ccaaacaactcatatgttcactttggtctcggtattaaagcttgtcaggataaaaaatat
gaggatgccatcaaaagtattggtctgggactgaagcgtatgcgctcctccatcattggt
tggtataatcttgctctggctcagctaaaaatgcataaatattctgacagtgccatatct
tccagtcaaggactaaaatcgagtgtgggaaatgctgatgattggactcagaagctgctg
aggttgaaactagaagctcttgtgaagacaggtcgagaccaggatgctgatgaagctttg
cagatacttgcacagatttcagataccaaaaatgacccagtgcttttggcattaaaagga
agagcttactgaaaaggccagaaggaggaagcatttcaggtttctgctgagcttttgagc
tctcacccaggatctgtggattctctcactttgaaagcacttctacatgttgcaaaagaa
cagcacaaacaagctgaggagagctttcaagaggctttatccagaagcccagataatggg
gagctgttctttctgctggggtccctgtattggaacatgggtgaagaaatacgacgtgac
cgcagcaaaactcatactcatttactcaaggcagctaaactggatccttatcttggttca
gtttttcgtcttctgggtcattactatagagaggtggcaaaagaccagggcagagccaga
ggctgctacaagagagcgtttgagctagatccaacggatgctgaagccggagcggctgct
gtagatctcagtatggagcagggggacatggactctgcgctgactgttctgcagtctgtg
acagagagagctactcctggctctgctaaatgggcctggatgagacgaggtctttaccac
ctcaaaattggtcagcatcaacaggccattgcagatctgcaggcggcgttgagggctgat
cctcaggactgggtctgttgggaatgtttaggcgaagcttacctaaaccgcaggagcttc
acggctgccctgaaagcttttgataaagcccacatactgcagcccacctccatctacagc
ctctatcagaccgctgccattaagcaaatcctcggccgatttaaagaggccgccgcggaa
tacaagcaaatcttagagaaggaggactatgtaccggcactgaaaggtcttggtgaatgc
ttgttagctttggctaaaagtgcactggatgactatcttgatggaagagctgtagatctg
atacaaaatgccatccattacctgttcagagctgtaaagcaaaggccagacctgtcgtgc
ttgtggaagttattaggtgattcctgcactgcctgcagaactgtgtctccaaaccgggct
aaagtgctggtacccggagctctgtgtggaatggatccatccgatcagaagcacaaactg
gaccagagacagctcctcactctcggggaaaggtgttttggtcgtgcattgaagctgatg
ccggaggctcccagtctgtggtttgacctgggtctgaactattaccatcaatccagactg
ctcagctctcactatcctgaggaggatccacagtctctgctggagaaagccctgcagtgt
gtaaagaaggcaatcatgctggacagtgcaaatcacacatactggaatgccctcggggtg
gtagccatgacaaagggaattgaaaattttgcacttgcacaacacagcttcatcaaatca
gtcaaagcggaaccaaataatgtggtagcgtggacaaaccttggtgctttgtatctaaag
aagggaaatatagagctttctcatgaagcctttaagattgctcagtctctagagcccctt
tatgtgaattgctggatcggacaggctctcattgctgagacagttggcagttatgacaca
atggatcttttcagacacaccacagaactaagcactcatactgaaggagtgaagggttat
gcctactgtgtttgctccacactgctggacaggagcaatagagactcggagctctatctc
tacaacattgtccagatgaacgccgtttctgctgctcaagtggctctgagcaagtacact
gagaggattcagacagacccagacgccttcatcatgctcgggtacctgaacacacacctg
cagctcaggaaacaggccactgaggcttatcgcagagctgttgagctgcttcaggcatcc
gctcatacagacaagctcagctttgctctgaggggttacggacgtgccctcagtgatgat
gggcagtgggaagaagcagtgcgcatttattgctccacgccactagaggagctgcatgat
ctcattgggttggcgcttgcctgttttagaatcggtcgccttccagagagcattcaggcc
tatgagaaagcccttgcagttgcgtcaactgagaaggaaaaggcctatatacttacagca
ctggccctgattcaacacaagctgggcagcatggatcatgccaaaacacttctcttcaaa
tgctccatgctaaaagagccggtccaggagagcctacagtgtctgtgtgctctgggcttg
gttaatggggacatcactctggccagtgctacactcactgagctgctgaagctgggagag
cctgcaggaggcgctgtggaggagcgctgtcttctcacctgcaccctgctggccctgcag
ggcaacttcagtggagttcacagagaggcttccagagctatacacaggaacccaggaaat
ccatcactctgggctcttctctcaagactggtcccacaatactgccccaataaagctgat
ggaggtgctgtggccggcagtgtggcatgtcaagccagcttgacgcttggaaagagggcg
ctgctgtacagtggagtgaatcaactggcctcaggccggcactctggcgaggacggaaga
cgcaacgctctgaaaacaatccagagagccgtgctgctctgcccagatgatcctgctggg
tgggcagggctaatggctgcctgtcacacagagaacactgcatgcttcctcacaggctcc
gcccctcgcagagaagatctggagagggcacacatggccctggtgtctgaaaaagtgaag
ggtctgcagggagaggacgggctcttggctcaggctctagaggggtgggtgctgcagcag
gctgtgactggactcaaactgagtggccagtatgaccaggcggagactctctgctctcag
gttcttagtgtgtctccggagcatcctgtggtgttcctgatgttgaggcaggttcagtgc
gagcgccttctgctgtctgaggctggtaacggcattcctccggcagtgctggatcagctc
agtgctgcggtcatggccaatcacacatctgtgtccgcttggcattggttggctgaggtt
taccgctctcagggtctgctggctcaggcctcagtggcttataaacagagtcttcagctg
gcctctcagcttggggaccacagcggcaagataagcagcctgctccgactttcacttttg
gcactcacaccatgtttggcaggtgttggtgtttctgattggaaggatctggtttctgaa
gccactggtgaagtcttaaaaatgggcaaatcaccagtcgctctacttttccaagcctta
ctgcagttctccgtgaagatgggcgccagggaaacccgtcgcctgttggaaaggattgtt
tatgctccagccttaggtggatctgaaacaatggcatcagtggcacgttggtacctcctg
cgccacctgcatgccaaagatgacctggagctgattgatactctgttggtgaaggcaaca
gcagcaggagacaacagactggtggatttccacagacgcctctacccatccagctga
DBGET
integrated database retrieval system
