Desulfatibacillum aliphaticivorans: Dalk_3622
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Entry
Dalk_3622 CDS
T00813
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dalk_3622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dal03019
]
Dalk_3622
Messenger RNA biogenesis [BR:
dal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dalk_3622
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_2
DUF3630
Ubiquitin_TPR1
Motif
Other DBs
NCBI-ProteinID:
ACL05310
UniProt:
B8FGT0
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All DBs
Position
complement(4589606..4591180)
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AA seq
524 aa
AA seq
DB search
MDGTTIVVVLLVALGGVAVGIIVYALIRKKAAADKLGRAKAKSEQILEEARIAAENTLKA
AQVEAKDVILQAKADFEAEAKEARKEIKQLEARLVQKEENLDRKSEQLDKKESDVAGREK
GLVKREQKMVAQEEQAQQLLEARTQELERIAGLTAEQAKDTLVQAMESEARHEGAKLIKR
IEMETNEIADKKAKEIISTAIQRYAGDYVAEKTVSVVDLPSEEMKGRIIGREGRNIRALE
AATGIDLIVDDTPEAVILSGFNPVRREVARLSLLRLIADGRIHPARIEEVVKKVENEVEN
TIRESGEQATFDLGVHGIHPELIKYLGRLKYRTSYAQNMLQHSIEVGFLCGIMASELNLN
VKQARRAGLLHDIGKAVDHEEEGPHALIGQRLCKKCGESPKIIHAVGAHHEDIPPSSVLA
VLVQAADGLSGARPGARREMFESYIKRLEDLEKIANSFEGVGNTFAIQAGRELRIIVQGE
KITDDQSVLLARDVAKKIEDSLTFPGQIKVCVIRETRAVSYASK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggatggaactacaattgttgttgtgttgttggtcgcccttggcggggtggctgtgggc
atcattgtgtatgcccttatcagaaaaaaagccgcagcagataagttgggcagggcgaaa
gccaaatcagagcaaattctggaagaagcgcggatagctgcggaaaacactctcaaggcc
gcccaggtcgaagcgaaggacgtaattcttcaggcaaaagcggattttgaggcggaggcc
aaagaagcacgcaaggaaatcaagcaactggaagcccgtctggttcaaaaggaagaaaac
ctggaccggaagtcggagcagcttgataaaaaggaaagcgacgtcgccggcagggaaaaa
ggactggtaaaaagagaacaaaaaatggttgcccaggaagaacaggcgcaacagcttttg
gaagccaggacccaggaattggagagaatcgccggactcaccgccgagcaggccaaagat
acattggtccaggccatggaaagcgaagcccgtcacgaaggggccaagctcataaagcgc
attgagatggaaaccaatgagattgccgataaaaaagccaaggaaatcatttctacggca
atccaaagatacgctggcgactatgtagccgaaaagacggtgtccgtcgtggatcttcct
tctgaggaaatgaaaggaaggatcatcggccgggaagggcggaacatcagggctcttgaa
gccgccaccggtatagacctgatcgtggatgacaccccggaagcggttattttgtcggga
ttcaatcccgttcgccgcgaagtcgcccgcttgtcgcttttgcgccttattgcggacggc
cgcatccatcccgctcgcatagaggaagtggtgaaaaaggtcgaaaacgaggtggaaaac
accatccgcgaatccggcgaacaggccactttcgaccttggcgtacacgggatccacccg
gaattgatcaaatatctcggccggctgaaataccgcaccagctatgcgcagaacatgttg
caacactccatagaggtcgggttcctatgcggaattatggcctccgagctgaacttgaac
gttaagcaggctcgcagggccgggctgcttcatgatatcggcaaggccgtggaccacgaa
gaggaagggccccacgccctgattggccagagactctgtaagaaatgcggggagtctcct
aaaatcatccatgccgtgggcgcacaccacgaggatattccgcccagttcggtcctggcc
gtgctcgtccaggctgcagacggactgtccggcgccagacccggcgcgcgtcgcgagatg
tttgaaagctatattaaaaggttggaggatcttgaaaagatcgccaactcctttgaaggc
gtcggcaacacctttgccatacaagcaggcagggagttgcgcattatcgtgcagggggaa
aaaatcaccgatgatcagtcggtgcttcttgccagggatgttgccaagaaaattgaagac
agccttaccttcccggggcaaatcaaggtttgcgtcattcgggagaccagagcggtcagc
tacgccagcaagtaa
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