Dermacentor albipictus (winter tick): 139060885
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Entry
139060885 CDS
T11267
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
dalb Dermacentor albipictus (winter tick)
Pathway
dalb04512
ECM-receptor interaction
dalb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dalb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139060885
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139060885
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dalb00535
]
139060885
Proteoglycans [BR:
dalb00535
]
Extracellular matrix (ECM) proteoglycans
Others
139060885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
139060885
NCBI-ProteinID:
XP_070396253
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Position
6:complement(23603517..23684010)
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AA seq
1014 aa
AA seq
DB search
MLSTLCCLATTALITVVRTQSDDDFFIPGEETLARLLPEEYGEADEEATEVCPKAKPGQD
DLPGFDLIRKFRLDDVQFDFPGIKRVTGSNSLQTAYRLSRKAELVLPTRAVFPLGLPDEF
SFVATFRKRSSRTDPWFLMRVTDVQGAAQFGLNVISRKNRLDFFAQDVTGNRQTLRFRNV
RVDDQQWHKVDISVFRDHAVLYLDCEKHSTLEIVQRAPIDVNGDVNIGKYESDLSTVPMD
LQWMVMSCNPARPERETCFELPPKGTPPAPTLPTPTEPGLPLESVCIECPPGSPGLNGTD
GLPGTPGLDGLPGVPGAPGFKGEIGAAGLPGLPGVDGLPGLPGPLGPIGPKGDTGTPGIP
GIPGLKGQKGDAGIPGEPGLPGVPGTMGPRGPQGPPGSTAVVEGPLGPPGDPGPPGPIGE
QGLQGQPGPLGPPGSKGEPGERGNTGTTGPRGFPGEQGPKGSPGSTGPRGPPGPPGRDGI
PGVTGSGSSSPGLPGRPGVPGEPGTPGPQGEKGSRGPPGPQGIEGEKGDKGDRGIHGLPG
LAGPKGDRGERGYQGDAGSKGDRGPPGIDGARGEPGLIGLPGPTGAAGALGLRGQKGEKG
EIGQPGIPGEPAIPGEPGPQGYVGPKGEPGSDGMKGAIGPMGPRGFPGLPGLPGPPGRPG
KQGHGGIEGPKGAKGDEGPPGPEGSPGEMGPPGIQGLTGKPGPKGIFGDKGLRGPEGPRG
LPGPQGPPGTPGPAGPPGLPGLMGPRGPQGLEGPPGQPGEKGECIYQAREEYLVAPSRPG
ATGAMGPPGMPGERGAPGERGTPGVPGQVGMPGPGGSPGQPGTPGTRGQPGMPGLPGPPG
RGFTEEEVKELCSAVLREQLSELTAKMRGPPGPPGRGKPGKPGPPGPQGSPGDPGTPGLP
GERGFMGLPGLPGPPGLPGPTGEKGDKGDRGPEGVGVEGPIGPRGSPGSPGPAGVGHPGR
PGERGPPGRLGQPGPRGPPGAQGPPGYCEMCNYGNADLLHMLHMNTVQQNNKGP
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgctttccacgctgtgctgcctggcgacgacggcgctcatcacagttgtgcgaacacaa
agcgacgacgacttcttcattcccggagaggagacgctagcgaggctgctaccagaagaa
tatggtgaagcggacgaggaagctacagaagtgtgcccaaaagcgaagccaggacaagac
gacctgccaggattcgatctgatccgcaagttccggttggacgacgtccagtttgacttc
ccgggcatcaagcgggtgaccggctccaacagcctgcagactgcatacagactgtcacga
aaagcggagctcgtactgcctacaagggcggtgttcccgctgggtctccccgacgagttc
tcgttcgtggcgaccttccgcaagcggagcagtcgcaccgacccctggttcctcatgcgg
gtcaccgacgtccagggagcggcccagttcgggctcaacgtgatctccaggaagaaccgg
ctggacttcttcgcgcaggacgtcaccggaaacaggcagacgttgcggttcaggaacgtc
cgggtagacgaccagcagtggcacaaggtggacatcagcgtgttcagggaccacgcggtg
ctctacctcgactgcgagaagcactctactctcgagatcgtccagagggcgcccattgac
gtcaacggtgacgtcaacataggaaagtacgagtcggacctctccacggtgccgatggac
ctgcagtggatggtgatgagctgcaatcctgcgagaccggagagagagacctgcttcgag
ctgccgccaaagggaactccgcctgcccctacactgccgacgcccacggagcctggcctg
cccctggagtccgtgtgcattgagtgccccccgggctcaccaggtctgaacgggactgac
ggtctaccaggaacgccaggtctggatggactccctggagtccctggcgcaccaggtttc
aaaggcgagattggtgctgctgggttgccaggactaccaggagtggatggcttgcccgga
ctgcctggaccactgggaccgatcggccctaaaggagacactggaacaccaggaatcccc
ggcattccaggtctgaaaggtcagaaaggagatgctggaatacctggagaaccaggactc
cctggagtccctgggaccatgggaccaagagggccacaagggccaccaggcagtacagca
gtggttgagggacctcttgggcctccaggagatcctgggccaccaggaccaataggtgag
caagggttgcaaggacagccaggacccttgggaccaccgggaagcaagggtgaaccaggt
gaaaggggcaacacaggaacaactggtcctcgtggctttccgggcgaacagggacccaaa
ggttcaccaggaagcacaggcccccgtggtccacctggaccccctggacgtgatggtatc
ccaggagtcacgggatcagggtcatcgtctccaggtttgcctggacgcccaggtgtgcct
ggggaacctgggaccccgggaccacagggtgaaaagggcagccgcggtccacctggccca
caaggcattgaaggtgaaaagggtgacaaaggcgatcgtggcatccatggactccctggc
ttggcaggcccgaagggtgacaggggtgaaagaggctaccaaggcgacgctggttcgaag
ggtgatcgcggtccacctggaattgatggagcaagaggagagccaggcctaattggactg
cctggacctactggagcggcgggtgctttgggcctgcgtggtcagaagggtgaaaaaggg
gagatcgggcagcctggaattccgggagagcctgccatccctggcgagccaggacctcaa
ggttatgttggaccaaaaggggagcctggatctgatggaatgaagggtgccataggaccg
atggggccaagaggattcccaggcctcccaggcctgcctgggcctccaggacgaccaggg
aagcaaggacacggcggaatagagggaccaaaaggagccaagggcgacgaaggaccacca
ggaccagagggatcacccggtgaaatgggccctccgggaatacaaggcctcaccggcaag
ccagggccgaaaggtatctttggagacaagggcctccgtggaccagaagggccaagggga
ttgccaggaccacagggtccacctggaactccaggtccagcaggacccccaggtctacca
ggactcatggggccaagaggtccccagggactggagggtcctcctggacagcctggtgaa
aagggcgagtgcatctaccaagccagggaagagtaccttgtggcaccaagcaggccggga
gcaacaggggccatgggaccaccaggaatgccgggtgagcgaggagctcctggggagagg
ggaactccaggcgtccccggccaagtgggcatgcctggtccaggcggatcgccaggccag
ccgggaacaccaggaaccaggggacaaccaggaatgccgggcctaccgggacctccgggt
cgtggatttactgaggaagaagtgaaagaattatgctcagctgtgcttcgagaacagttg
agtgaactgacggcgaagatgcgtgggcctcctggtcccccggggagagggaaaccagga
aagccaggaccaccgggaccccaagggtcaccaggtgacccgggtacaccaggactgccg
ggagagcgtgggtttatgggactacccgggctcccaggaccaccaggactacccggtccc
actggtgaaaaaggtgacaaaggtgatcgtggccccgaaggagttggcgtggaaggtcct
attggcccccgtggatctccaggatctccaggcccggctggcgtgggccacccagggcgg
ccaggtgagaggggacccccgggtcgcctaggacagccaggcccccgcggtccaccaggg
gcgcaaggaccgcccggctactgcgagatgtgcaactacggaaatgctgacctgctacac
atgctgcacatgaacaccgtccaacagaacaacaagggaccctaa
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