Diachasma alloeum: 107040278
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Entry
107040278 CDS
T07663
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
dam
Diachasma alloeum
Pathway
dam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107040278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dam03019
]
107040278
Messenger RNA biogenesis [BR:
dam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107040278
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
107040278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107040278
NCBI-ProteinID:
XP_015115786
LinkDB
All DBs
Position
Unknown
AA seq
291 aa
AA seq
DB search
MAQNLLSLAEKTFILHGVDGDFRTDGRSRLEYRALEIETNIMPQTNGSVRLRIANTDVLV
TVKVEVDTPSLDRPNEGKLEFFVDCSANATPEFEGKGGEELGTEISNVLSNAYQSSHALD
LTILSILPNKKCWKMYVDVLILQCDGNLFDAIGAAVKCALFATEIPKVATASVDGDDADI
QLSDDPFDCVKLNVENYPVLVTLCKIGDNCVVDPTADEEMCAAANIVISVTPKGRVTSIV
KTGYGSLQPSTLLKTLECGKEIGKRLNERLMEALRKEEALGPQRPVFGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaatttactgagtttagcagagaaaacgttcattctccatggtgttgatgga
gattttcgaacggatggccgctctcgattagaataccgtgcattagagatcgaaacgaat
ataatgccacagacgaatggctcagttcgtctgaggatagcaaatactgacgttctcgtg
accgtcaaagttgaagtggacactccatcgcttgatcggccgaacgaaggaaaacttgaa
ttctttgttgattgttcagcaaatgcaacaccagaattcgaaggcaaaggtggtgaggag
ctaggcaccgagatcagtaatgtattgtcgaacgcttatcaatcgtcccatgctctagac
ctgacgatactgagtattttgcctaacaaaaaatgttggaagatgtatgtcgacgtgttg
attcttcaatgcgatgggaatttattcgacgctattggagcagctgtcaaatgcgctctt
ttcgccacggaaatacccaaagtcgctacagcctcagtagatggtgacgacgcagacatt
cagctgtcagatgatccattcgattgcgtcaaattgaatgttgaaaattatccagtactc
gtgactttatgcaaaattggagataactgtgtggtggacccaactgcagatgaagagatg
tgtgcagctgctaacatcgtcatatcagtgacaccgaagggaagagtcacctcaattgtg
aaaactggatatggaagtcttcaaccatcaacactgctaaagacccttgagtgtggaaaa
gaaattggtaagagattgaatgagagactgatggaggcattgaggaaagaagaagctctc
ggaccacaacgtccagtctttggttttctcggataa
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