Desulfoglaeba alkanexedens: FDQ92_01900
Help
Entry
FDQ92_01900 CDS
T05964
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dax
Desulfoglaeba alkanexedens
Pathway
dax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FDQ92_01900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dax03021
]
FDQ92_01900 (rpoB)
03400 DNA repair and recombination proteins [BR:
dax03400
]
FDQ92_01900 (rpoB)
Enzymes [BR:
dax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FDQ92_01900 (rpoB)
Transcription machinery [BR:
dax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FDQ92_01900 (rpoB)
DNA repair and recombination proteins [BR:
dax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FDQ92_01900 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RnfC_N
DOCK-C2
Vmethyltransf_C
Motif
Other DBs
NCBI-ProteinID:
QCQ21063
UniProt:
A0A4P8L0K9
LinkDB
All DBs
Position
complement(376673..380785)
Genome browser
AA seq
1370 aa
AA seq
DB search
MATALTHEYRVRKNFGKIQKIIDIPNLIQMQKESYENFLQRDVPPEARSNKGLQEVFDSV
FPIEDFSGTASLEFVQYSFGDVKYDVEECLARGMTYEAPLKIVVRLVVYDVDKESDHRSI
RDIKEQEIYFGTLPIMTENGTFIVNGTERVIVSQLHRSPGIFFDHDRGKSHSSGKILYSA
RIIPLRGSWLDLEFDPKDILYVRIDRRRKLPVTVLLKALGHSSEELLNYFYPTQKVVIFD
RERAGKALDPAVLVGSRAPEDIVNPETGEVLVKKNRKLGKQTLKRLQDMGIETLPVPTTE
LIGQVLAHDVVDFKTGEIVAECNDTVTEDLLEDLAARQIGEIELLHLQGQDVSPSFRNTL
LLDKVHSKEDAIIEIYRRLRPSNPPTLEVATEFFNNLFFSPDHYDLSEVGRLKLNLQLGL
DVPIDHRTLRREDILEAVKHLIRLKDTQGAVDDIDNLGNRRVRAAGELLENQYRIGLVRM
ERAIKERMSLQEIEALMPHDLINAKPVSAVVKEFFGTSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLSTYARVNPYGFIETPY
RKVSDKRATRDVQYLTAMDEKDYPIAQANAPLDEQGHFMLPQVSARVAGEFMMVPPEEIR
FMDVSPNQLVSVSASLIPFLEHDDANRALMGSNMQRQAVPLIQTRAPIVGTGVERIVARD
SGVAVIARRDGVVEYVDATRIVVRAREPEGILDSGVDIYKLTKFQRSNQNTCMNQKPLVR
QSDRVRKGQIIADGTSTEHGELALGRNVMIAFMSWGGYNFEDSILVSERIVQDDVFTSIH
IEEFEVLARDTKLGKEEITRDIPNVGEEALKDLDESGIVRIGAYIKHNDILVGKVTPKGE
SQLTPEEKLLRAIFGEKASDVKDTSLRVPPGVEGIVIDAKVFSRKGVDKDERTRMIEDEE
IARMMKDQRDELEIIRKSTVRRLGQLLEGRTSTSGLKDGRRVYVKKGEPITEDVLMNMPS
GLWSRLSAEEDPALSMEIQNIYENYREQVDLVKSLFEEKINKLRRGDELPPGVIKMVKVY
VAVKRKLQVGDKMAGRHGNKGVVSRILPIEDMPHFADGTPVDIVLNPLGVPSRMNVGQVM
ETHLGWAAKGLGEQLARMIEEHKEREALDEKLKRILNHLEFDNYFKGAGEEELKALAPQL
KEGLHVASPVFDGAHEDEIRAFLKEAGLPETGRTILYDGRTGEPFDQPVTVGIMYMLKLH
HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGTAYALQEFLTVKSD
DVAGRTRMYEKIVKGDNTLEAGLPESFNVLVKELQALCLDIQLLEEGEED
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgctttgacccacgagtatcgggttaggaaaaatttcggaaagattcaaaag
atcatcgacatccccaacctcattcagatgcagaaggagagctacgagaacttcctgcaa
agggatgtgccgcctgaagcccggtccaacaagggactccaggaggtgttcgacagtgtc
tttcccatcgaggatttcagcggcacggcgtcgctggaattcgttcagtacagtttcggc
gacgttaaatacgacgtggaggaatgtctggcgcggggcatgacctatgaggcccccttg
aaaatcgtggtgcggctcgtcgtctatgacgtggacaaggaatccgatcaccgttccatc
cgcgacatcaaggaacaggagatctatttcggaacgcttccgatcatgaccgaaaacggg
acgttcatcgtcaacggtacggaacgggtcatcgtgagccagctgcaccggtcgccgggc
atcttcttcgatcacgaccggggaaaatcccattccagcggcaagatcctctattcggcg
aggattatccctctgaggggttcgtggctggatctggaattcgatcccaaggacattctt
tacgtgcgcatcgaccggcgccgcaaactgccggtgacggtcctgctgaaggctctcggc
cactcctccgaagaactgctcaactatttctaccccacccagaaggtggtgatctttgac
cgggagcgcgccgggaaggccctggatcccgccgtcctggtgggcagccgggctcccgaa
gacatcgtcaacccggaaaccggcgaggtcctcgtcaaaaagaaccgaaaactcggcaag
cagaccctcaagcgcctccaggatatgggaatcgagacgctgcccgtgcccaccaccgag
ctgatcgggcaggtgctggcccatgacgtggtggatttcaagaccggggaaatcgtcgcc
gagtgtaacgacacggtcaccgaggatctgctcgaggacctggcggcccggcagatcggt
gagatcgaattgctgcacctccagggccaggacgtgagcccgtcttttcggaacacactg
ctactggataaggtgcacagcaaggaagacgctattattgaaatttaccggcggctgcgg
cccagcaacccgccgaccctggaggtggccacggaatttttcaacaacctgttcttcagc
cccgaccactacgacctttccgaagtggggcgtttgaagctgaatcttcagctgggactc
gacgtgcccatcgaccaccgtacgcttcgccgcgaggacattctggaggcggtgaagcac
ctgatccgattgaaggacacccagggtgccgtggacgatatcgacaacctgggcaaccgg
cgtgtgcgagccgccggtgaactcctcgaaaatcagtaccggatcggcctcgttcgtatg
gaacgggccattaaggaacggatgagcctccaggagatcgaggcgttgatgccgcacgat
ctcatcaacgccaagccggtttcggcggtggtcaaggaatttttcggcacgagccagctg
tcgcagttcatggaccagacgaatccgctttctgagatcacccacaagcggcggctgagc
gcccttgggccgggcggcctcacccgggagcgggcgggcttcgaagtgcgcgacgttcac
ccgacccactacgggcggatctgtcccatcgagacgccggaaggtccgaacatcgggttg
atcgtctcgctttccacctatgctcgcgtgaatccttacggcttcatcgaaacgccctac
cgcaaggtgtcggacaaacgggcgacccgcgacgtgcaatacctcacggccatggacgaa
aaggactatcccatcgcccaggccaacgcgccgctcgacgagcaggggcatttcatgctg
ccccaggtttcggcgcgggttgcgggcgagttcatgatggtgcccccggaagagatccgc
ttcatggacgtttcgcccaaccagctggtgagcgtgtcggcgtcgctcatccccttcctg
gaacacgacgacgccaaccgggcgctcatgggatccaacatgcagcgccaggcggtgccg
ctgatccagacccgggcccccatcgtggggaccggggtcgagcgtatcgtggcccgcgac
agcggcgtagccgtgatcgccaggcgggacggcgtcgtcgaatacgtggatgcgacgagg
atcgtggtgcgggcccgggaacccgaaggcatcctggatagcggcgtcgacatctacaag
ctcaccaagtttcagcggtccaatcagaacacctgcatgaaccagaaaccgctggtccgg
cagagcgaccgggtgcgcaaagggcagatcatcgccgacggcacctccaccgaacacggc
gaactggccctggggcggaacgtcatgatcgccttcatgagctggggcggctacaatttc
gaagattccatcctggtgagtgaacggatcgtacaagacgatgtgttcacctcgatccac
atcgaggagttcgaagtcctcgcccgggataccaagctgggcaaagaagagatcacccgg
gacattcccaacgttggcgaggaggccttgaaggatctggacgagagcggcatcgttcgg
atcggtgcctacatcaagcacaacgacatcctggtgggcaaggtgacgcccaagggtgaa
agccaattgacgccggaagagaagcttctgcgcgccattttcggtgagaaggcgagcgat
gtgaaggacacctcgcttcgggtgccccccggcgtcgaagggatcgtgatcgacgccaag
gttttctcccggaagggcgtggacaaagacgagcggacgcggatgatcgaggacgaagag
atcgcccgaatgatgaaggaccagcgcgatgagctggagatcatccgaaagagcacggtc
cgccgcctgggccagctccttgagggcaggaccagcacgtccgggctcaaggacggccgc
agggtttacgtgaaaaagggcgaacccatcaccgaagacgtgctcatgaacatgccgagc
ggcctgtggagccgcctcagcgccgaggaggatccggcgctttccatggagatccagaac
atctacgaaaactaccgggaacaggtggacctggtaaaatcgctcttcgaagagaagatc
aacaagctgaggcgcggcgacgagctgcctcccggcgtcatcaaaatggtcaaggtctac
gtggccgtcaagcgcaagctccaggtgggcgacaagatggccggccgccatggaaacaag
ggcgtcgtttcgcggatcctccccatcgaagacatgccgcattttgcggatgggaccccc
gtggacatcgtcttgaatcccctgggggtgccttcccgcatgaacgtgggtcaggtgatg
gaaacccacctgggttgggccgccaagggcctgggagagcaactggcgcgcatgatcgaa
gaacacaaggagcgggaagctctggacgagaaactgaagcggatcttgaatcatctggaa
ttcgacaactatttcaagggtgccggtgaagaggaactaaaggccctcgccccgcagctt
aaggaaggcctccacgtggcgtcgccggtgttcgacggggcccacgaagacgagatccgg
gcctttctaaaggaagccgggcttcccgaaaccggccggacgatcctctacgacgggcgg
acgggagaacccttcgatcagccggtcaccgtgggcatcatgtacatgctgaaactccac
cacctggtggacgacaagatccacgcccgttccatcggaccgtactccctggtgacccag
cagccgctgggcggcaaggcccagttcggcggacagcgcctcggggaaatggaagtgtgg
gccatggaagcctacggcacagcctacgcgctccaggaattcctcacggtcaaatcggac
gacgtggcggggcggacccgcatgtacgaaaagatcgtcaagggcgacaatacgcttgaa
gccggacttcccgagtcgttcaacgtgctcgtgaaggagcttcaggccctgtgcctggat
atccagctattggaagaaggggaagaagattga
DBGET
integrated database retrieval system
