Desulfomicrobium baculatum: Dbac_3352
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Entry
Dbac_3352 CDS
T00963
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dba
Desulfomicrobium baculatum
Pathway
dba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dbac_3352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dba03019
]
Dbac_3352
03009 Ribosome biogenesis [BR:
dba03009
]
Dbac_3352
Enzymes [BR:
dba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dbac_3352
Messenger RNA biogenesis [BR:
dba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dbac_3352
Ribosome biogenesis [BR:
dba03009
]
Prokaryotic type
rRNA helicases
Dbac_3352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACU91424
UniProt:
C7LPU2
LinkDB
All DBs
Position
3785686..3787911
Genome browser
AA seq
741 aa
AA seq
DB search
MTDTTDFGDAPREGSQTENFEGKAFSMADLPQTLQAAATRLNWAELMPVQVQTIPYMLGG
QDVMVQSQTGSGKTGAFLLPILDRIETGLGAPQALVLVPTRELAVQVTRDAEELGREAGI
KPLSIYGGVGYKGQIQGLEDGAQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSM
GFYPDMKQLQRYLPRGLQSAMFSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVV
YKVPAMQKSRILVKIIEQENPASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAR
EEVLEKLRLNKLKFLVATDVAARGIDIHELSHVFQYQPPQDHEAYVHRTGRTGRAGAAGV
AISFVSGMEEIELEQIAKKFSIPMVEQPLPADEELETLISQRAVFLLEARLRKADNIQKE
RMQRFMRTVGELAANDESRALLAMLVDEFYQGTFHAPLEQPSEKLVDMVRPVRPQSAPAQ
PAAPRAPRMPAPRPVPQTENIQTEQPADAAAVPAENGRPEGEKRRRKRSRKKPAAGADAA
LREQARPEISPEASDVQPAALEPAEVPAVAPEVVVEPQVSAPAVIPEKIQPPRSPRPPKP
APQAAPARAETKDEAVAAESVAPGTPEENVTEEGQPAAAPKKRRRRRPRKSGGAKPEGGN
DVATEAAAPSGASAPAPSVAQAPAAPAPASRPPRGEPKAKSAEAPADDSASRTREAPRPS
RKKPAEAKTEPPRPKKKIFLE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaccactgattttggtgacgccccgcgcgagggctcccaaaccgagaatttc
gaaggcaaggcattttccatggccgacctgccgcaaaccctgcaggccgcggcgacccgt
ttgaactgggccgagctcatgccggtgcaggtgcaaaccatcccgtacatgcttggcgga
caggacgtcatggtccagtcgcagaccggcagcggcaagaccggggcttttttgctgccc
attctggaccgcattgaaacagggcttggcgcgccgcaggccctggtcctggttcccacc
cgcgagctggccgtgcaggtcacccgcgatgccgaggaactgggccgggaggccgggatc
aaaccgctctccatctacggcggcgtgggctacaagggccagatccagggccttgaggac
ggggcgcagctcatcatcggcacgccggggcgcatcctggaccacctgctcaaagggaat
ctcaacctggaccggctgaagatcctggtcttcgacgaggccgaccgcatgctgtccatg
ggtttttatccggacatgaagcagctgcagcgctatttgccgcgcgggctgcagtcggcc
atgttctcggcgacctatcccggacatgtgaagcgcctggcccagcagtttctgaaagat
ccggtctttgtatccttaagccagtcccaggttcacgtcagcgacgtgctgcatgtggtc
tacaaggtgccggccatgcagaagagccgcatcctggtcaagatcatcgagcaggagaac
ccggcctcggccatcatcttctgcaacaccaaggcggatgtgcattttgtgtccacggtg
ctgcgtcgcttcggctacgatgtgggcgagatcagcgccgacctgacccaggctgcgcgg
gaagaggtgcttgagaagctgcgtctgaacaaactcaagttcctggtggccacggatgtg
gccgcgcgcggcatcgacatccacgagctgtcccatgtcttccagtatcagccgcctcag
gatcacgaggcctacgtgcaccgcaccggacgcaccggaagggccggagccgccggagtc
gcgatatcctttgtttcgggcatggaagagattgagcttgagcagatagccaagaaattc
tccatccccatggtcgaacagcccctgcctgccgacgaggagcttgaaacgctcatctcc
cagcgggccgtgtttttgcttgaggcgcgcctgcgcaaggccgacaatatccaaaaagag
cggatgcagcggttcatgcgcaccgtgggcgagcttgcggccaacgacgaatcccgcgca
cttttggccatgctggtggacgaattctatcagggtacctttcatgccccgctggagcag
ccttcggagaaattggtcgacatggtccgccctgtcaggccccagtccgcgcctgcgcag
cctgctgcgcccagagcgcccagaatgcccgctccccggccagtgcctcagaccgagaac
atccagaccgagcagcctgcggacgcagcggccgtcccggccgagaacggacggcccgaa
ggcgagaagcgtcggcgcaagcggtcccgcaaaaagccggccgccggagctgacgcagct
ttgcgcgagcaggcccgccctgaaatatcaccggaggcctcggatgttcagccggccgcc
cttgaacctgcggaagtccctgcggtagcccccgaggtcgtcgtggagccccaggtctct
gcgccggcggtcatcccggaaaagattcagcctccccgcagcccccggccgccgaagccc
gctccgcaggctgcgcccgctcgggccgagaccaaggatgaggccgtggcggcagaatcc
gtagcgcccggcactcccgaggagaatgtgaccgaagaaggacagcctgcggccgcgccg
aaaaagcgtcgtcgccgccgtccacgcaagtctggaggggcaaagcccgaaggcggcaat
gatgttgcgactgaggctgccgcaccctccggggcttccgctccggcgccaagcgttgcg
caagccccggcagcccctgcgcctgcgtcccgtccgccgcgcggggaacccaaggcgaag
tctgcggaggctccggccgacgacagtgcctcgcggaccagggaagcccctcgtcccagt
cgcaagaagccggccgaggccaagaccgaaccgcctaggcccaagaaaaagatattcctg
gaataa
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