Desulfarculus baarsii: Deba_0388
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Entry
Deba_0388 CDS
T01284
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
dbr
Desulfarculus baarsii
Pathway
dbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Deba_0388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbr03400
]
Deba_0388
DNA repair and recombination proteins [BR:
dbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Deba_0388
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Deba_0388
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ADK83763
UniProt:
E1QDX7
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All DBs
Position
437792..439831
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AA seq
679 aa
AA seq
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MDFGSEQTFQYWRTAPSQAQFKLESDYQPQGDQPQAIAQLTAGLAQGCKRQVLLGVTGSG
KTFTMANVIAASGLTTLVLAPNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYIPA
SDTYIEKDSSINERIDKMRHAATFALLTRQDVIIVASVSCIYGLGSPEAYAGMLLYLQRG
DQVGREAVLRKLVEMLYERNEFSFHRGVFRARGDVVEIFPAYEEERAVRIEFFGDEVERI
SFIDPLRGVALEQTDKVVIFPASHYVTTEGVREAAIAAIRAELAERIKYYDDNARFIESQ
RIRERTLFDIEMMKELGWCHGIENYSRHLTGRQPGQPPPTLLDYFPKKWLLIIDESHITA
PQVRGMYNGDRSRKATLVDFGFRLPSALDNRPLNFDEFNALLDNVIYVSATPADYELEQA
QGVVVEQLIRPTGLIDPIVEVRPASGQVDDVMAELRLVAGRGERALVTTLTKRMAEELTE
YLTEVGLSVKYLHSDIDTIARVELLQGLRRGDFDILVGINLLREGLDLPEVSLVAILDAD
REGFLRSTRSLIQTAGRAARNVGGKVIFYADQITDSIARAMEETSRRRVAQEQYNQEHGI
TPESIKKAIGAMLPPEIAADYPAPPPLTAAVADPGELPAIIADLRRRMKEAAKGLRFEEA
AELRDQIKALEEQDLLWRG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggacttcggttccgaacagacctttcaatattggcgcaccgcgcccagccaggcccag
ttcaagctggaaagcgactaccagccccagggcgatcaaccccaggccatagcccagctt
acggcgggcctggcccagggctgcaagcgccaggtgcttttgggcgtcaccggcagcggc
aagaccttcaccatggccaacgtcatcgccgccagcggcctgaccaccctggttctggcc
cccaacaagaccctggccgcccagctctatggcgagttcaaggcgctgtttccccacaac
gccgtggagtatttcgtctcgtactatgattattatcagcccgaggcctatatcccggcc
agcgacacctatatcgaaaaagattcatcgatcaacgagcgcatcgacaagatgcgccac
gccgccaccttcgccctgctcacccgccaggacgtgatcatcgtcgccagcgtcagttgc
atctatggcctgggctcgcccgaggcctacgcggggatgcttttatatctgcaacgcggc
gaccaggtcggccgcgaggcggtgctgcgcaagctggtggagatgctctacgagcgcaac
gagttttcgtttcatcgcggtgtctttcgcgcccggggcgacgtggtcgagatctttccg
gcctacgaggaagaacgggcggtgcgcatcgagtttttcggcgacgaggtcgagcgcatc
tcgttcatcgacccgctgcgcggcgtggccctggaacaaaccgacaaggtggtgatcttc
ccggccagccactacgtcaccaccgagggcgtgcgcgaggccgccatcgccgccatccgc
gccgagctggccgagcgcatcaaatattatgacgacaacgcccgcttcatcgaatcccag
cgcatccgcgagcgcacgctgtttgacatcgagatgatgaaagagctgggctggtgccac
ggcatcgaaaattatagccgccacctcaccggccgccagcccggccagccgccgcccacc
ctgttggattattttcccaaaaagtggctgctgatcatcgacgaaagccacatcaccgcg
ccccaggtgcgcggcatgtacaacggcgaccgcagccgcaaagcgactctggtcgatttc
ggttttcgcctgcccagcgccctggataatcgcccgctcaatttcgacgaattcaacgcc
ctgctcgacaacgtgatctacgtctcggccaccccggccgactacgagttggaacaggcc
cagggcgtggtcgtcgagcagctcatccggcccaccggcctgatcgaccccatcgtcgag
gtgcgcccggccagcggccaggtcgacgacgtcatggccgaactgcgcctggtggccggc
cgtggcgagcgggccctggtcaccaccctgaccaaacgcatggccgaggagctgaccgaa
tacctcaccgaggtgggcttgtcggtcaaatacctgcacagcgacatcgacaccatcgcc
agggtcgagctgctgcaaggcctgcgccgcggcgatttcgacattctggtgggcatcaac
ctcctgcgcgagggcctggacctgcccgaggtcagcctggtggccatcctcgacgccgac
cgcgagggcttcctgcgctcgacgcgcagcctcatccagaccgccggtcgcgccgcccgc
aacgtcggcggcaaggtcatcttctacgccgatcagatcaccgactccatcgcccgggcc
atggaggagacctcgcgccgtcgcgtcgcccaggagcaatacaaccaagaacacggcatc
acccccgagtcgatcaaaaaggccatcggcgccatgctgcccccggagatagccgccgac
tacccggccccgccgccgttgaccgccgccgtggccgacccaggcgaactgccggccatc
atcgccgatctgcgccggcgcatgaaagaggcggccaaagggctgcgcttcgaggaggcc
gccgaactgcgcgaccagatcaaggccctcgaggaacaagacctgctctggcgcggttag
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