Solidesulfovibrio carbinolicus: C3Y92_06590
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Entry
C3Y92_06590 CDS
T06503
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dcb
Solidesulfovibrio carbinolicus
Pathway
dcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3Y92_06590 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcb03021
]
C3Y92_06590 (rpoB)
03400 DNA repair and recombination proteins [BR:
dcb03400
]
C3Y92_06590 (rpoB)
Enzymes [BR:
dcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3Y92_06590 (rpoB)
Transcription machinery [BR:
dcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3Y92_06590 (rpoB)
DNA repair and recombination proteins [BR:
dcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3Y92_06590 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QAZ66920
UniProt:
A0A4P6HLU9
LinkDB
All DBs
Position
1497994..1502103
Genome browser
AA seq
1369 aa
AA seq
DB search
MAQLTKNFGKIVKTLTIPHLLNLQIDSYELFLQKDIPPTSREDAGLEGVFRSVFPIEDFN
KTASLEYVSYEIGEPKYDVPECIAKGLTFEAPLRIKVRLVVYDVDEETENRTIRDIKEQI
IYFGTVPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKSHTSRKVLYSCRIIPMRG
SWLDFDYDHKDILYVRIDRRRKMPATILFKAMGMSRGDILRYFYEVEHFTFEPHHVYRQV
QPDFYRKEKAYSEIRDSEGKVIVAVDKPITKRAWRLMLEAGIEKVEVDPATLLGLFLAED
QSDPATGEVMAEAGDELTADLIEKLKDAGVVDLPLLHTRGVDTSSSIRDTLALDKTIDTI
TAQVEIYRRLRPSSPPTPEIAANFFENLFRNPDYYDLSPVGRYKINARLKVDQPLDFRTL
ANDDILKAVKHLTFLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS
LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTHSKVNDFGFIETPYKVVKDGQLT
GETIYLDATREIDEVIAGANAPLDENKAFINPMVGARIRGDQVVIPREQVTLMDISPSQI
VSVSAALIPFLEHDDANRALMGSNMQRQAVPLLRCEQPLVGTGMEGAVAKDSGSCILAEG
EGFVHYADAERIIVCYDDPAVGTDTGSAKTYELLKHHKSNQNTCFGQVPRVLVGQRVVKG
DVLADGPGIRDGELALGKNLLVAFMPWCGYNYEDSILISENAVKDDTFTSVHIEEFEVVA
RDTKLGPEEITRDIPNVGEEMLKDLDDCGIIRIGARVAPDDILVGKITPKGETQLTPEEK
LLRAIFGDKARDVKNTSLKVPPGIEGTVIDVRVFNRRSGEKDDRTRQIEDFELARLDTKE
GQHAAAIAANVRRRLWPVVSGKTVFQTIKGVKKGEVLLEANHPMTQEVLEALPVKKLSGL
FTSKETNEAVAEVLDEYDRHIQFIKGLYDQKREKTTEGDDLPPGVIKMVKVYVAVKRKLN
VGDKMAGRHGNKGVVSCILPIEDMPFFSHGRPVDIVLNPLGVPSRMNIGQILETHLGWAG
MELGRQLAELVDSGKAMEGVRDRAKEVFDTEETTALIDGMSDDDLRDALRALKNGIVAKT
PVFDGATEDELWSWLKLAGLPEDGKVTLYDGRTGEAFHRPVTVGCMYILKLHHLVDEKIH
ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVGGRVKM
YEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVDLIQDEKKIAKVPPRR
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgaccaaaaatttcggcaagatcgtcaaaacgctgaccattccccatctg
ctcaatctgcagatcgactcctacgagctctttctgcaaaaagatattcctcccaccagc
cgggaggacgcgggacttgaaggcgtcttccgttcggtctttcccatcgaggattttaat
aaaactgcctcgttggaatacgtcagctacgaaatcggcgagccgaaatacgacgtgccc
gagtgcatcgccaaaggcctgaccttcgaggcgcccctgcgcatcaaggtccgcctggtc
gtgtatgacgtggatgaagagacggaaaaccgcaccatccgcgacatcaaggaacagatc
atctatttcggcaccgtgccgcttatgaccgagaaaggcacgtttatcatcaacggcacc
gagcgcgtcatcgtcaaccagctccagcgctccccgggcattatcttcgagcacgactcc
ggtaaaagccacaccagccgcaaggtcctctattcctgccgcatcatccccatgcgcggc
tcctggctcgatttcgactacgaccacaaggacatcctgtacgtgcgcatcgaccgccgt
cgcaagatgcccgccaccatcctgttcaaggccatgggcatgtcgcgcggcgacatcctg
cgctatttctacgaagtcgagcacttcaccttcgagccgcaccatgtctaccgccaggtg
cagcccgatttctaccgcaaggaaaaggcctattcggagatccgcgacagcgagggcaag
gtcatcgtcgccgtggacaagcccatcaccaagcgggcctggcggctcatgctggaagcc
ggcattgagaaggtcgaggtcgatccggccacgctgcttggcctgtttttggccgaggac
cagtccgatccggccaccggcgaagtgatggccgaggccggcgacgaactgaccgccgac
ctcatcgaaaagctcaaggacgccggcgtcgtcgatctgcctctgctgcacacccgtggc
gtggacacctcgtcctccatccgcgacacgttggccctggacaagaccatcgacaccatc
acggcccaggtggaaatctaccgccgcctgcgtccgtcctcgccgccgaccccggaaatc
gcggccaacttcttcgagaacctgttccgcaatccggactactacgacctctctccggtc
ggccgctacaagatcaacgcccggctcaaagtcgatcagccgctggatttccgcaccctg
gccaacgacgacatcttaaaagccgtcaagcacctgaccttcctcaaggactcccacggt
ccggccgacgacatcgaccacctgggcaaccgccgggtgcgtcccgtgggcgagctggtc
gagaaccagtaccgcatcggccttgtgcgcatggagcgggccatcaaggagcgcatgagc
ctgcaggaagtggccacgctcatgccccacgacctcatcaatcccaagcccgtggccgcg
gtcctcaaggaattcttcggcacctcccagctgtcgcagttcatggaccagaccaacccg
ctttcggaagtcacccacaagcgccgcctgtcggcccttggaccgggcggtctgacccgc
gagcgcgccggcttcgaggtccgcgacgtccacacctcgcactacggccgcatctgcccc
atcgaaacgccggaaggcccaaacatcggcctcatcgtgtccctgaccacccactccaag
gtcaatgacttcggctttatcgagacgccctataaggttgtcaaggacggccagctcacc
ggcgagaccatctacctcgacgccacccgcgaaatcgacgaggtcatcgccggcgccaac
gcgcccttggacgagaacaaggcgtttatcaatcccatggtcggcgcgcgcattcgcggc
gaccaggtggtgatcccgcgcgagcaggtcaccctgatggacatttcgcccagccaaatc
gtgtccgtctcggccgcgctcattccgttccttgaacatgacgacgccaaccgcgcgctc
atgggttcgaacatgcagcgccaggccgtgccgcttttgcgctgcgagcagccgctcgtc
ggcaccggcatggaaggcgcggtggccaaggattccggctcctgcatcctggccgagggc
gagggcttcgtccactacgccgacgccgagcgcatcattgtgtgctacgacgatccggcc
gtgggcacggacaccggttcggccaagacctacgaactgctcaagcaccacaagtccaac
cagaacacctgcttcggccaggtgccgcgcgtgctggtcgggcagcgggtggtcaagggc
gacgtcctggccgacggcccgggcatccgcgacggcgaactggccctgggcaagaacctg
ctggtcgcgttcatgccctggtgcggctacaactacgaagactccatcctcatttccgaa
aacgcggtcaaagacgacaccttcacctcggtgcacatcgaggagttcgaggtcgtggcc
cgcgacaccaagcttggacccgaggaaatcacccgcgacatccccaacgtcggcgaggag
atgcttaaagacctcgacgactgcggcatcatccgcattggtgcccgggtggccccggac
gacatcctggtcggcaagatcacgcccaagggcgagacccagctgacccccgaagaaaag
ctcctgcgagccatcttcggcgacaaggcccgggacgtcaaaaacacttcgctcaaggtc
ccgcccggaatcgagggcacggtcatcgacgtgcgcgtgttcaaccgccgctccggcgag
aaggacgaccgcacccgccagatcgaggacttcgagctggcccgcctggacaccaaggaa
ggccagcacgccgccgccatcgccgccaacgtgcgtcgccggctgtggccggtggtctcc
ggcaagaccgtgttccagaccatcaagggcgtgaaaaaaggcgaagtgcttctcgaagcc
aaccaccccatgacccaggaggtcctggaggcgctgccggtcaagaaactgtccggcctg
ttcacctccaaggagaccaacgaggccgtggccgaggtcctcgacgagtacgaccgccac
atccagttcatcaagggcctctacgaccagaagcgcgagaagaccaccgagggcgacgat
ctgccgcctggcgtcatcaagatggtcaaggtctacgtggccgtgaagcgcaagctcaac
gtcggcgataaaatggccggccgccacggcaacaagggcgttgtgtcctgcatcctgccc
atcgaggacatgccctttttctcccacggccgtcccgtggacatcgtgctcaaccccctg
ggcgtgccttcgcgcatgaacatcggccagatcctggaaacccacctgggctgggccggc
atggagctgggccgccagctggccgaactggtcgattccggcaaggccatggaaggcgtg
cgcgaccgggccaaggaagtcttcgacaccgaggagaccacggcccttatcgacggcatg
tccgacgacgacctgcgtgacgccctgcgggcgcttaaaaacggcatcgtggccaagacc
ccggtctttgacggcgccaccgaagacgagctgtggagctggctcaagctggccggcctg
cccgaggacggcaaggtcaccctctacgacggccgcaccggcgaggctttccaccggccg
gtcaccgtgggctgcatgtatatcttgaagctccaccacctggtcgacgagaagatccac
gcccgttccaccggcccgtactccctggtcacccagcagccgctgggcggcaaggcccag
ttcggcggccagcgtctgggtgaaatggaagtctgggctctggaagcctacggcgcgtcg
tacctcctgcaggagttcttgaccgtcaagtccgacgacgtcggcggccgcgtcaagatg
tacgagaagatcgtcaagggcgacaatttcctggaagccgggttgcccgagtccttcaac
gtcttggtcaaggaacttatgtccctgggcctggacgtggacctgatccaggacgaaaaa
aagatcgctaaggttccgccgcggcgctag
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