KEGG   Dermochelys coriacea (leatherback sea turtle): 119840926
Entry
119840926         CDS       T09064                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
dcc  Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119840926
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcc03041]
    119840926
   03036 Chromosome and associated proteins [BR:dcc03036]
    119840926
Spliceosome [BR:dcc03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    119840926
 Complex B
    119840926
 Complex C
   U2 SnRNP specific factors
    119840926
Chromosome and associated proteins [BR:dcc03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    119840926
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ TPR_DNAAF5 HEAT_EF3_N HEAT_MROH2B_C HEAT_ECM29 TPR_IPO5 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG VPS15-like_hel Adaptin_N Phage_T7_Gp15 UNC45-central
Other DBs
NCBI-GeneID: 119840926
NCBI-ProteinID: XP_038223637
LinkDB
Position
11:complement(58006445..58046806)
AA seq 1301 aa
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGASSQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSVGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq 3906 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaagga
aaaaaggctgcccttgatgaagctcagggagtaggccttgattccacaggatactatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgaactagaagatgatgatgatgactactcctctacaagtttgcttggtcagaagaag
ccagggtaccatgctccagtggcattacttaatgacataccacagtcaactgaacagtat
gatccctttgctgaacatcgtccacagaagattgcagatcgagaagatgaatacaaaaag
cacaggcggatgatgatcatttctcctgagcgccttgatccttttgcagatggagggaag
acccctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagcagaaaaagctaaagctggggaactt
aaagtcgtcaatggcgcctcctctcagccaccttcaaaacgcaaacggcgttgggatcaa
acagctgaccagactcctggtactactccaaaaaagctatccagttgggatcaagcagag
acccctggacatactccttctttgaggtgggatgaaactcctggccgtgcaaagggtagt
gagactcctggagcaaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggatacacctggtcatgcaactccaggccatggaggc
gcaacttccagtgcacgtaaaaatcgatgggatgagacccccaaaacagaaagagataca
ccgggacatggcagtggatgggctgagactcctcgtacagatcgaggtggtgattcagtt
ggtgaaaccccaactcctggagcaagtaaaagaaagtcacgttgggatgaaacacctgct
agccaaatgggtggtagtactcccgttttgacacctggcaaaacaccaattggtacacca
gccatgaacatggcaacccctacgccaggtcatataatgagcatgactcctgaacagctg
caggcatggcgctgggaaagagaaatagatgagagaaaccggccactatctgatgaagaa
ctggatgccatgttcccagaggggtataaggttcttccccctccagctggttatgtgcct
attcgtactccagctcgcaaacttacagcaactcccacaccattgggtggtatgactgga
ttccacatgcaaacagaagataggaccatgaagagcgttaatgaccaaccatctggaaat
cttccattcctaaaaccagatgatattcaatactttgataaactactggttgatgttgat
gaatcaacacttagtccagaagagcagaaagaaagaaaaataatgaaattgctcttgaaa
ataaagaatggtacacctccaatgagaaaagctgctttgcgccagattaccgataaagct
cgtgaatttggagctggtccactgtttaatcagattctacctctgctgatgtcaccaaca
cttgaagatcaagaacgtcacttgcttgtcaaagttattgatagaatcttgtacaaactg
gatgatttggtccgaccatatgtacacaagattcttgtggtcattgaaccactactgatt
gatgaagactactatgcgagagtggaaggcagagaaattatatcaaacttagctaaggct
gctggtttggctacaatgatctccaccatgcgacctgatattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgttgttgcctctgctttaggcattccttct
ctgttgcccttcttgaaagctgtatgtaagagcaaaaaatcctggcaagctaggcacact
ggcatcaagattgtacagcaaattgctattcttatgggctgtgctatcttgcctcatctc
agaagtttggttgaaatcattgaacatggtttggtggatgagcagcagaaagtgcgtact
atcagtgctttggctattgctgctttggctgaggcagctactccttatggtattgaatca
tttgactctgttctaaagcccttatggaagggtatacgtcagcacagaggaaagggtctg
gctgcctttttgaaagctattgggtatcttatccctcttatggatgctgagtatgccaac
tactataccagagaagtaatgctaatccttatcagagagttccagtctcctgatgaagaa
atgaaaaaaattgtgttaaaggtggtaaaacagtgttgtggtactgatggcgttgaagca
aactacattaaaacagagattttgccgccatttttcaaacacttttggcagcacagaatg
gcactggacagaagaaattacagacagttggttgataccacagtggagctggcaaacaaa
gttggagcagcagaaattatttccaggattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggttatggaaacaattgagaaaataatggggaacctgggtgcagcagac
attgaccataaactagaagaacaacttattgatggtatcctgtatgccttccaggaacag
accacagaggactctgtgatgttgaatggctttggcacagtggttaatgctcttggcaaa
cgagttaaaccctacttgccccagatctgtggtacagttttatggcgtttgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctcacgtactgcagttgttatgaag
acttgtcaagaggaaaagctgatgggacacttgggtgttgtcctgtatgagtatctgggt
gaggaataccctgaagtattaggcagcatacttggagcacttaaagccattgtgaatgtt
ataggtatgcacaaaatgacgccaccaatcaaggacctgctgccaagactcacacctatc
ttgaaaaacagacatgagaaagtacaggagaattgtatcgacctagttggtcgtattgct
gacaggggagcagaatatgtttctgcaagggaatggatgaggatctgctttgaactgctg
gagttgttaaaagcccacaagaaagctatccgacgagccacagtaaatacttttggttat
attgcaaaagctattggaccccatgatgtgctggctacactgctaaataacctgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcacctttcacagtactgcctgctctgatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtattaaaatctctttcttttctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagacgctttaatggacagagaccttgta
cacagacaaacagccagtgctgtggtgcagcatatgtctcttggagtatatggatttggc
tgtgaggattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgaaacatct
cctcacgtcattcaggcagttatgggagcactggagggcctaagagttgccattggaccg
tgtagaatgctgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtgtattggaagatttataattcaatctatattggctcacaggatgccctgatagcacat
tatccaagaatctacaacgatgaaaagaacacctacattcgttatgaacttgactacatc
ttataa

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