Dietzia cinnamea: VYL96_12010
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Entry
VYL96_12010 CDS
T10417
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dcd Dietzia cinnamea
Pathway
dcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VYL96_12010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcd03021
]
VYL96_12010
03400 DNA repair and recombination proteins [BR:
dcd03400
]
VYL96_12010
Enzymes [BR:
dcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VYL96_12010
Transcription machinery [BR:
dcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VYL96_12010
DNA repair and recombination proteins [BR:
dcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VYL96_12010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WVF62633
LinkDB
All DBs
Position
complement(2605019..2608525)
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGPILAVSRQTTSVSTVPGAPRRVSFAKLSEPLPVPGLLDLQTESFEWFIGSEEWQQR
AASRGTTNLEGGLESILKEISPIEDFSGSMSLSFSEPYFEEVKASLEDCREKDRTYEAPL
FVTAEFENTETGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDRSRDK
STEKDVHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQSVTVLLKALGWTTTEIKERYG
FSEIMMSTLEKDTVEDTDQALLEIYRKLRPGEPPTRESAEALLENLFFKEKRYDLARVGR
YKVNRKLGLPDPEGDATTTLTREDIAATIEYLVRLHAGETSMQVAGGREVPVEVDDIDHF
GNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDSEAITPQSLINIRPITAALKEFFGT
SQMSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRRVVDGVVTDQVDYLTADEEDRYVVAQANSEIDAEGR
FVEDRILVRKKHGDVEVVEAGDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QSVPLVRSEAPLVGTGMELRAAVDAGDVVVNSNPGIVEEVSADFITVMDDDGGRQTYRLS
KFARSNQGTCSNQKPIVDEGDRVEAGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDDRGIVRIG
AEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVF
SRDDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPV
DIILNTHGVPRRMNIGQIMETHLGWLAKAGWEVPREADGSLPDWATKLPEEIHHVEPGTN
TATPVFDGAADTEITGLLGCTLPNRDGERMVKADGKATLFDGRSGEPFPYPVAVGYMYIL
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGQAVSLGEGD
DDDLDRTAANLGINLSRDESSAADELAQ
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacccatcttggcagtctcccgccagaccacgtcagtctccaccgttccc
ggtgcgccccggagagtctcgttcgcgaagctctccgagccgttgccggtcccggggctg
ctcgacctccagacggagtcgttcgagtggttcatcggttcggaggagtggcagcagagg
gccgcctcgcgcggtaccacgaacctcgagggaggtctggagtccatcctcaaggagatc
tccccgatcgaggacttctccggctccatgtccctctcgttctcggagccgtacttcgaa
gaggtgaaggcgtccctcgaggactgccgcgagaaggaccgcacgtacgaggcgcccctg
ttcgtcaccgcggagttcgagaacaccgagaccggtgagatcaagtcgcagaccgtcttc
atgggcgacttccccatgatgaccgacaagggcacgttcatcatcaacggcaccgagcgg
gtcgtcgtgtcccagctcgtccggtcgccgggcgtgtacttcgaccgttcacgcgacaag
tccacggagaaggacgtccactccgtcaaggtcatcccgtcgcgtggcgcatggctcgag
ttcgacgtcgacaagcgcgacaccgtcggcgtgcgcatcgaccgcaagcgtcgccagtcg
gtcaccgtgctgctcaaggcgctcggctggaccaccaccgagatcaaggagcgctacggc
ttctccgagatcatgatgtccacgctcgagaaggacacggtcgaggacaccgaccaggcc
ctgctggagatctaccgcaagctgcgtccgggcgagccgccgacccgcgagtccgccgag
gccctcctggagaacctcttcttcaaggagaagcgctacgacctggcccgcgtcggccgc
tacaaggtcaaccgcaagctcggcctgccggatcccgagggcgacgccaccaccacgctc
acgcgtgaggacatcgccgcgaccatcgagtacctcgtgcgcctccacgcgggcgagacg
agcatgcaggtcgccggtggccgtgaggtgccggtcgaggtcgacgacatcgaccacttc
ggcaaccgtcgtctgcgcaccgtcggcgagctcatccagaaccaggtccgcgtcggcctg
tcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggactccgaggcgatcacc
ccgcagtcgctgatcaacatccggcccatcaccgcggcgctcaaggagttcttcggaact
tcccagatgtcgcagttcatggaccagaacaacccgctgtcgggcctgacgcacaagcgt
cgcctctcggcgctcgggcccggcggcctctcgcgtgagcgcgccggtctcgaggtccgc
gacgtccacgcctcgcactacggccgcatgtgcccgatcgagacccccgagggtcccaac
atcggtctcatcggttcgctctcggtgtacgcccgcgtcaacccgttcgggttcatcgag
accccgtaccgccgtgtcgtcgacggcgtcgtcaccgatcaggtggactacctgaccgct
gacgaggaggaccgctacgtcgtggcgcaggcaaactcggagatcgacgccgaggggcgc
ttcgtcgaggaccgcatcctcgtccgcaagaagcacggcgacgtcgaggtcgtcgaggcc
ggcgacgtcgactacatggacgtctcgccgcggcagatggtctccgtcgccaccgcgatg
atcccgttcctcgagcacgacgacgccaaccgtgccctcatgggtgcgaacatgcagcgt
cagtccgtcccgctcgtgcgctcggaggcgccgctcgtcggcaccggcatggagctgcgt
gcggccgtcgacgccggcgacgtcgtcgtcaactccaacccgggcatcgtggaggaggtc
tcggccgacttcatcaccgtgatggacgacgatggcggtcgccagacctaccggctgtcc
aagtttgcgcgctccaaccagggcacctgctccaaccagaagccgatcgtcgacgagggc
gaccgcgtcgaggccggccaggtcctcgccgacggcccctgcaccgagaacggtgagatg
gcgctcggcaaaaacctgctcgtggcgatcatgccgtgggagggccacaactacgaggac
gcgatcatcctctcgcagcgcctggtggaggaggacgtgctcacgtccatccacatcgag
gagcacgagatcgacgcccgcgacaccaagctgggcgccgaggagatcacccgggacatc
cccaacgtctccgacgaggtcctcgccgacctcgacgaccgcggcatcgtgcgcatcggc
gccgaggtccgtgacggcgacgtgctggtcggcaaggtcaccccgaagggcgagaccgag
ctgaccccggaggagcgcctcctgcgcgcgatcttcggtgagaaggcgcgcgaggtgcgc
gacacctcgctcaaggtgccccacggcgagtccggcaaggtcatcggcgtgcgcgtgttc
tcgcgtgacgacgacgacgacctgccccccggcgtcaacgagctggtgcgcgtgtacgtg
gcgcagaagcgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggc
gtcatcggcaagatcctccccgccgaggacatgccgttcctgcccgacggcacgccggtg
gacatcatcctcaacacgcacggcgtcccgcgccgtatgaacatcggtcagatcatggag
acccacctcggctggctggccaaggcgggctgggaggtgccgcgcgaggcggacggctcc
ctgcccgactgggcgaccaagctgccggaggagatccaccacgtcgagcccggaaccaac
accgccacccccgtcttcgacggcgcggccgacaccgagatcaccggtctgctcggctgc
accctgccgaaccgtgacggtgagcggatggtcaaggccgacggcaaggcgacgctgttc
gacggccgctccggcgagccgttcccgtaccccgtcgcagtgggttacatgtacatcctc
aagctgcaccacctggtggacgacaagatccacgcccgctcgaccggtccgtactcgatg
atcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggcgcggcgtacacgctgcaggagctgctcacgatc
aagtccgacgacgtcgtgggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaac
atccccgagccgggcatcccggagtccttcaaggtcctcctcaaggagctgcagtcgctg
tgcctcaacgtcgaggtgctctccagcgacggccaggcggtctccctgggcgagggtgac
gacgacgacctcgaccgcaccgccgcgaacctcgggatcaacctctcacgcgacgagtcc
tcggcggccgacgagctggcccagtag
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integrated database retrieval system
