Dermatophilus congolensis: SAMEA4475696_2073
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Entry
SAMEA4475696_2073 CDS
T05038
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dco
Dermatophilus congolensis
Pathway
dco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4475696_2073 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dco03021
]
SAMEA4475696_2073 (rpoB)
03400 DNA repair and recombination proteins [BR:
dco03400
]
SAMEA4475696_2073 (rpoB)
Enzymes [BR:
dco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4475696_2073 (rpoB)
Transcription machinery [BR:
dco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4475696_2073 (rpoB)
DNA repair and recombination proteins [BR:
dco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4475696_2073 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
SNV24509
UniProt:
A0A239VRQ8
LinkDB
All DBs
Position
1:complement(2316614..2320099)
Genome browser
AA seq
1161 aa
AA seq
DB search
MASSRIATQKMSSAITPSGRVSFAKIREPLEVPDLLALQTESFDWLLGNERWQDRVAEAL
EAGRNDVAEHSGLEEIFEEISPIEDFSGSMSLSFRDHRFEEMKYSLEECKEKDMTYSAPL
FVTAEFMNNTTGEIKSQTVFMGDFPLMTDQGTFIINGTERVVVSQLVRSPGAYFESAPDK
TSDKDIFTAKIIPSRGAWLEFEIDKRDQVGVRVDRKRKQSVTVLLKALGWTDAQILEEFG
EYDSMRATLEKDNTASQDEALLDIYRKLRPGEPPTKEAAQNLLNNLYFNPKRYDLAKVGR
YKVNKKLGIETDRAVNTLTVEDIVATIKYLVALHAGETSLPGHRDGKDVAVRVETDDIDH
FGNRRLRSVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIREFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGP
NIGLIGALASYARINPFGFIETPYRKCEFGAVTDEVHYLSADEEDEFIIAQANAPIGEDG
KFVEERVLARRKGGESDDVPAEDIDYMDVSPRQMVSAATALIPFLEHDDANRALMGANMQ
RQAVPLVRSEAPFVGTGMEYRAALDSGDVVRAKAAGVVTRVTADLVDVTGDDGSYLTYRI
DKFRRSNQGTCYNQRVVVNEGDRVELGEVIADGPATAGGEMSLGRNLLVAFMPWEGYNYE
DAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEDVLADLDERGIIRI
GAEVRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVKV
FDREEGDELPPGVNQLVRVYVANKRKITVGDKLSGRHGNKGVISRIMPVEDMPFLEDGTP
VDIILNPLGVPGRMNIGQVLEIHLGWIASRGWDIEGDPDWARMIPEDGRTAPALTRVATP
VFDGATEEEIRGLLGSTLPTRDGQRLVATDGKARLFDGRSGEPYPDPIAVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VNGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSTDGTEIDLREPEQEVF
RAADELGIDLSRREPSTVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggcttcctcgcgtattgcgacccagaagatgtcgagcgccatcaccccctccgggcgg
gtgtcgttcgcgaagattcgcgaacccctcgaagtacctgaccttcttgctctccaaacg
gagagctttgactggttgcttggtaacgagagatggcaggatcgagttgcggaggccctc
gaggctggccggaacgatgtggccgagcactccggcctcgaagagatctttgaagagatc
tcgcctatcgaagacttctcgggttcgatgtccctctcgttccgtgatcaccggttcgaa
gagatgaagtactcccttgaggagtgcaaagaaaaggacatgacgtacagcgctccgctg
ttcgtcactgccgagttcatgaataacacgactggtgaaattaaaagccagaccgtgttc
atgggtgacttcccactcatgacagatcaaggcaccttcatcattaacggcaccgagcgt
gtcgttgtttcgcagctggtgcgcagccctggtgcatatttcgagtctgcgccagataaa
accagcgacaaagacattttcactgccaagatcatcccgagccgtggggcctggctcgaa
ttcgagattgacaagcgtgaccaggttggtgttcgtgttgatcgcaagcgcaagcaatct
gtcacggtgctccttaaagcactgggctggaccgacgctcagatccttgaagagtttggt
gagtacgactccatgcgtgccaccctcgaaaaggacaacactgcttcgcaggacgaagcc
cttcttgacatctaccgcaagctgcgtccgggcgaacctccgaccaaggaagcagctcag
aacctccttaacaatctgtacttcaaccccaagcgttacgaccttgccaaggtcggccgt
tacaaggtcaacaagaagcttggtattgaaacggatcgggcggtcaacactctgactgtc
gaagacatcgtcgcaacgattaaatacctggtagcgctgcacgcaggagaaacatctctg
ccagggcaccgtgacggcaaagacgtggctgttcgcgtcgaaacggatgacatcgatcac
ttcggaaaccgtcgtcttcgcagcgttggtgaacttattcagaaccaggtccgtacaggc
ctgtcacgcatggagcgtgttgtccgtgagcgcatgacgacgcaggacgttgaggcaatc
acgccgcaaacgttgatcaacatccgtcctgttgttgcctctatccgtgagttctttggc
acgagccagttgtctcagttcatggatcagaacaatccacttgcaggactgacgcacaaa
cgtcgtctttctgcacttggtcctggtggtctttctcgcgaccgcgctggcatggaagtt
cgtgacgttcacccgtcgcactacggacgtatgtgtcccattgagacccctgaaggtccg
aacatcggtcttattggtgctttggcttcctatgctcgcattaaccccttcggttttatt
gagacgccttaccgtaagtgcgagttcggggcagtcacggatgaggttcactacctgtcc
gcagacgaagaggacgagttcatcatcgctcaggcaaatgccccgatcggtgaagacgga
aaattcgttgaagagcgtgtgctagctcgtcgtaaaggcggcgaatctgacgatgttcca
gccgaagacattgactacatggatgtctcgccgcgtcagatggtttctgccgcaacagcg
cttatcccattcctggagcacgatgacgccaaccgtgccctgatgggagctaacatgcag
cgccaggcagtgccgctggtgcgcagtgaagctccttttgtgggtacgggtatggagtac
cgcgcagctctcgactccggtgatgttgttcgtgccaaggctgctggtgtggtcactcga
gtgaccgcagatctcgtcgatgtcaccggtgatgacggctcctacctcacatatcgcatc
gataagttccgccgctctaaccagggcacttgttacaaccagcgcgtcgtggtgaatgaa
ggtgaccgcgtcgaacttggcgaagttattgctgacggtcctgcgactgccggtggtgag
atgagccttggacgtaacctccttgtggcattcatgccgtgggaaggctacaactacgaa
gacgccatcatcctgtctcagcgactagtccaggatgacgtcctttcttcgatccacatc
gaagaacacgaagtcgatgcccgtgataccaagctcggcccagaagaaatcactcgagac
atccccaacgtttctgaggatgtacttgctgatctggacgaacgcggcatcatccgtatc
ggcgctgaagttcgtgacggtgatctgctcgtcggaaaggtcactcccaagggtgaaacc
gagctgactccggaagagcgtttgcttcgcgccatcttcggtgagaaagcccgcgaggtg
cgggacacctctctcaaagttccacacggtgaaacgggaacggtcattggtgtcaaggtc
tttgaccgtgaagagggagatgaacttccaccaggcgtgaaccagcttgtgcgcgtctac
gtcgcaaacaagcgcaagatcacagtgggtgacaagctttctgggcgtcacggaaacaag
ggtgttatcagccgcatcatgccggttgaagacatgcccttcttggaagacggcacgccc
gttgacatcattcttaacccgctgggcgttcctggtcgtatgaacatcggtcaggtgctt
gaaattcaccttgggtggatcgcaagccgcggatgggacatcgagggtgatcccgattgg
gcacgcatgatccctgaggacggtcgcactgctcctgctttgacccgcgttgctacgcct
gtttttgatggcgcaacagaggaagaaatccgaggtctgcttggatcgacacttcctacc
cgggatgggcagcgtcttgttgctactgatggaaaagcgcgtctcttcgatggtcgctcc
ggtgagccttaccctgatcccatcgcagtgggatacatgtacatcctgaagctgcaccac
ctggtcgacgacaagatccacgcccgtagcacaggcccgtactccatgatcacgcagcag
ccactgggtggtaaggctcagttcggtggtcagcgctttggtgaaatggaagtgtgggca
ctggaggcttacggtgccgcgtatgcgctgcaggaacttctcacgatcaaatctgacgac
gtcaatggtcgcgtgaaggtgtacgaggccattgtgaagggtgagaacattcccgagccg
ggcatcccggaatcgttcaaggttctcatcaaagaaatgcagtctttgtgcctgaatgtg
gaagttctttctacggacggcactgagatcgacctccgtgagccggagcaggaagtgttc
cgcgcagctgatgagctcggaatcgacctgtcccgccgcgagcccagcacggtcgaagag
gtctaa
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