Daucus carota (carrot): 108195949
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Entry
108195949 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108195949 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108195949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108195949
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108195949
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108195949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
PTP2
Motif
Other DBs
NCBI-GeneID:
108195949
NCBI-ProteinID:
XP_017218465
LinkDB
All DBs
Position
7:27929726..27950257
Genome browser
AA seq
2385 aa
AA seq
DB search
MLPFSVTAASQIRHLLNNVTAANFDSVYQQLSEFIGYGTEESILVLQTCFDQLNFQWKDY
KNIQLEPIFVSIFRNILNRPNFSTLLCQSIKSLSVNEDLLDSLCKAMQLAASERIVLGLA
LSESENADVRMCGKSFCISQIAQLCSSHESLGSAEQIQNILIFLTQSKGLCNHVDSFIEI
LSLVHLKGNSEFILAPLLTNELREVNFFSNLDMFNENSENEFDIILAEMEKELCMADLMK
EFGYGCTVNVTQCKDMLALFLPLTEVTVARIFGSVVHTNSELDRYQNTYSTFCSAISGSS
LSDLPHLDSWSVDVLIESITQLAPGINWINVFENLDYEGFYIPNEASFTLLMSIYRRTCQ
EPFPLHAVCGSVWKNAEGQISFIKHAVSVSPEVFSFANSARQLAYTDAVEGDKFHLGHSN
HAWLCLDLLEVLCQLAERGHAGSIRPVLEFPRKHCPEILLLGVASITTTYNLLQYEIYSS
VFPGLLKNTTGTSVFLHLWHVNNSLLLRGFLDAFSIDPENIIKVLDLCHELKILSKVLDM
VPFSFGLRMAALGSQKELIDLETWLSINLVIYKDTLCEECLKFIKEIQNSTQEQSSACFN
QCSSLRNIYSETISTFLKVLQANASLISSSDLLEEIEKQNMTVMQSNVRVKNPSGTESTA
DGYANDVETEINSLFHQLFSGQLAVDAMIQMLDQYKESSEKREQSIFECMIANLFEEYKF
FSKYPDRQLNIAAYLFGSLIQHQLVTHLTLGIALRAVLDALRKPVDSKMFIFGTKALEQF
VERVIEWPQYCNHILQISHLRGTHSELVACIERALVKISPSRSELDVGPVPAVDQHQKSI
PAANMETQVSAFPIIGSTTMRIAAQASSVQLQQRQQSLLEEERKASLPASSYMKLTSPPA
MNPSVSTSDASSTLKSTVSAALSSSNNLVRPSRAAPATRFGSALSIETLLAAAERRENLI
QAPASEIQDKISFIINNLSPANVEAKAKEFSEFLKEQYYPWFAQYLVMRRASIEPNFHDL
YLKFLDKVNSKPLNKEIVQASYENCKVLLGSDLIKTHSEERSLLKNLGSWLGKITIGRNH
VLRAREIDPKSLIIEAYEKGLMIGVVPFTSRILESCQNSLAYQPPNPWTMGILAILTEIY
AMPNLKMNLKFDIEVLFKNLSVDMKDVSPSSLLKDRAKEIEGNPDFSNKDVAPSQASIVG
DVKPGIVSNLNQVELPHDVAIPSHPTVPSHVLSQYAAPVPQSMSKSEDEKVAPFVISDQL
PSDQALLQVQSSFPVSQLPAPASSIEQQVVVNPKLHSLGLQRHFQSVLPPIMDRSMKEIV
SGIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCKEPLRASI
ISNLRTSVQGLTLANELLEQAVQLATNDNLDLGCALIEQAATEKAVQTIDGEITQQLSVR
RKQREAVRPAYFDTSLYNQGHMGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSGQTS
NPSLVGPSSTASVGFSEGYSSASSLYPTIGTTGMGAVADSSGLGPEDLDAGSAKQLNSST
VHSGLAECVDQHNFGSGVIPISTCEVPAVHTNAVKESGEHAQLLSSTSTTEKFGSSILEQ
SLTTGDALDKYQLVSEKLENLMTADCTEADIQALVAEVPEIILGCISRDEAALAVAQKVF
KGLYENDSNIAHVGAHLAILAAIRDVSKFLVKELTSWVIYSEADRKFNTDITVGLIQSDL
LNVADYNVHMAKLLDAGRNKPATDFSISLIKTLARNNPKVISELHHLVDALAKLAARPGS
PESLQHLVEIARNPSALSDLTVGKEDNVRHSRDRKQASGHSAASREEFNLLGSVEPDPVG
FRDQVSMLFAEWYRICELPGPKDSASARYVVQLMQSGLLNGDDMSDRFFRLLMELSVSHC
LQSHQQTQPLSFLAIDIYAALVFSILKFCPVDHGSSKLSLLSKVLAVAVRIIYKDAEGKK
ASFNSRPYFRLFINWLFDLATLEPVSEGANLQVLIALANAFHALQPLKIPAFSYAWLELV
SHRNFMPKLLSGNPQKGWPCFQRLLVDLFQFLEPFLRNTKLGEPVHFLYKGSLRVLLVLL
HDFPEFLCDYHFSFCDVIPSSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLVEITQAPC
ILSEVDTALRAKQMKSDVDEYLKTKQHGSFLSELKKKLLLPPVDAAQAGTRYNVPLMNSL
VLYVGVQAIQQLQARTPSHALGSGSLAAFHVGPALDVFQLLITELDTEGRYLFLNAVANQ
LRYPNNHTHYFSFILLYLFAESNQEVIQEQITRVLVERLIVSRPHPWGLLITFIELIKNP
RYNFWKRSFTRCAPEIEKLFDSVSSLCGRSKPVEGVVSGGLSDML
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttttccgtcaccgctgcttcacaaatccggcatctcctcaacaacgtcacc
gccgctaacttcgactccgtttatcaacagctctccgagttcattggatatggaactgaa
gaaagcatattggtgcttcagacctgctttgatcaattaaattttcagtggaaagactat
aagaatatccagttggaacctatattcgtatcaatttttagaaacatcttaaaccggcca
aatttcagtacactattgtgtcagtcaataaaaagtctgtctgttaatgaagatctcttg
gacagtctctgcaaggcaatgcaacttgcagcatctgaaagaattgtattaggtcttgct
ttgtctgaatccgaaaatgctgatgtcagaatgtgtggtaagagtttttgcatatctcag
attgcacaactttgttccagtcatgaatcattgggttctgctgagcaaattcagaacatt
cttatttttcttactcaatcgaaagggctttgcaaccatgtggattcatttattgaaata
ctatcgctggttcatttgaaaggaaattctgagtttatcttggctccgttgcttacaaat
gaattgcgtgaagtcaactttttcagcaatttggatatgttcaatgagaactctgaaaat
gagttcgatattatcttggctgaaatggaaaaagagttatgtatggctgatctgatgaaa
gaatttggttacggttgtactgtgaatgtcacacaatgcaaggatatgttagctctattc
ttaccgttgactgaagttactgttgctagaatatttggttctgttgtccacacgaattct
gaacttgatagataccagaatacctactcgacattttgttcagctatcagtggcagcagc
ttatcagatctgccacacttagattcttggagtgttgatgtgctcatcgaatccatcaca
caacttgctccaggaattaactggataaacgtctttgagaacttggattatgagggtttt
tacattccgaacgaggcttctttcactttattgatgtcaatttacagacgtacatgtcag
gaaccatttccgcttcatgctgtttgcggctcagtatggaagaatgctgagggtcagata
tcttttattaagcatgctgtctcagtatcacctgaagtatttagctttgcaaattctgcg
aggcaactggcgtacacagatgctgtggaaggtgacaagtttcatctgggacattcaaat
catgcatggctatgtcttgaccttctggaagtattgtgccagctagctgagagaggtcat
gcaggttctattcgaccagtactcgagtttcctcgcaagcactgcccagaaatcttgttg
ctaggggtggcaagcatcacaacaacatataatcttctgcaatacgagatttattcttcc
gtcttccctgggttgctgaaaaatactactgggactagtgtttttcttcatctttggcat
gtcaacaatagccttctgttgcgtggcttcctagatgcattcagcatagacccggaaaac
ataattaaagttttggacttgtgccatgagttaaagattttatcaaaggtattggatatg
gttccattttcgttcggtcttaggatggctgcccttggttctcagaaagaactcatagac
ctggaaacgtggctgagtattaacttagttatatataaagatactctctgtgaggagtgc
ctcaagttcataaaggagattcaaaatagcactcaagagcagtcatctgcttgttttaac
caatgtagttctcttcggaatatctactcggagacaatatctacattcttgaaggtcctc
caggctaacgccagcttaatttcttctagcgatcttttggaggaaatagagaagcagaat
atgacagttatgcaatcaaatgtgagagtgaagaatcctagtggtactgagtcgactgct
gatggatatgccaatgatgttgagacagaaatcaactcattatttcatcaattgttttct
ggccaattggcagttgatgcaatgattcaaatgctggatcaatacaaagagtcatctgaa
aagagggaacaatctatatttgagtgcatgattgcaaatctgtttgaagaatacaaattt
ttctccaagtaccctgacaggcagctcaatattgccgcttatctgtttggatcacttatc
caacatcaacttgtcactcatcttacacttggcattgctttgcgtgcggtattggatgca
ctacgcaaacctgtggattctaaaatgtttatatttggtaccaaagctctggaacagttt
gttgaacgcgtaattgagtggccacagtactgcaatcatattttgcaaatatctcattta
cggggtactcattcagaacttgttgcatgtatagagcgtgcacttgtcaaaatttcacca
agtcgttcagagctagacgtaggccctgttcctgctgttgaccaacaccaaaaatctatc
cctgcagcaaacatggagacacaggtgtcggcgtttcctattattggatctactaccatg
cgaatagcagcccaagcttcttctgtccagcttcaacagaggcagcagagtttgttagag
gaggaacgtaaagcttctctaccagcatccagctacatgaagctgacttcaccacctgca
atgaatccttcagtttctactagtgatgcgtcaagtaccctgaagagtacagtttcagct
gcattgtcttcatccaataatcttgtccgtccttcacgtgcagctcctgcaacacggttt
ggctctgctcttagtatcgaaacacttcttgctgccgcagaacgaagggaaaatctaata
caggccccagcatctgagatccaggataagatatcattcatcattaataacttgtcacca
gctaatgtggaagctaaagcaaaagaattttcggagttccttaaagagcaatattatcct
tggtttgctcaatatttggtgatgagaagagctagcattgagccaaattttcatgatttg
tacttgaagttcttggacaaagtgaattcaaaaccattgaacaaagagatcgtgcaagct
agttatgaaaactgcaaggttttgctaggatctgatcttataaaaacacattctgaggag
cggtctctcttgaagaatttgggcagctggcttgggaagattacgattggtaggaaccat
gtcttgcgggctagagagattgatcctaagtcattgattattgaggcttacgagaaaggt
ttgatgatcggagtcgttccatttacatcgaggatactggaaagttgtcaaaacagtctt
gcatatcaaccacctaatccttggactatgggtattcttgcaatactaactgaaatttac
gcaatgccaaatttgaaaatgaatcttaagtttgacatcgaggttttattcaagaaccta
tctgtggatatgaaagatgtcagtcctagttctcttctcaaggacagagcaaaagaaata
gaaggaaatcctgatttttccaacaaagatgttgcaccatcccaggcatcaattgtaggt
gacgtgaaaccaggcatagtgtcaaatcttaatcaagtggagctaccacatgatgttgct
attccttcccatcctacggtcccttctcatgtattatctcagtatgctgctcctgtccct
cagtctatgtcaaagtcggaggatgagaaagtggcacctttcgtcatatctgatcagctt
ccttctgatcaggctcttcttcaagtgcaatcttctttccctgttagccagctgcctgca
ccagcatctagtattgaacaacaagtggttgtcaatcccaagctgcatagtctaggacta
caacggcatttccagagtgtacttcctccaatcatggatcggtccatgaaagagattgtg
tctggtattgtccagcgcagcgtttctattgcaactcaaacaacaaaggaactagttttg
aaggactatgctatggagtcagatgagactcgaatacgtaatgcagcacacttaatggtg
gcaagtttgtctgggagcctggcccatgtgacatgcaaggaacctcttcgcgcttcaatc
ataagtaacttgaggacttcagttcagggtttgacgcttgcaaatgagctccttgaacaa
gctgttcagcttgccactaatgataaccttgatcttggatgtgctctgattgaacaagct
gcgacagagaaggctgtacagactattgatggggaaataactcagcaactctcagtaaga
cggaagcagagggaggctgttagacctgcatatttcgatacgagcctgtataatcaaggt
cacatgggtgttttaccggaggctctccgacctaaacctgggcgtctctcacactcacaa
cagcgagtttatgaggattttgtccgcttaccttggcaaaatcagtctggacaaacctca
aatccttctttagttggtccttcaagtactgcaagtgttggcttctcagagggatatagt
tcagcatctagtctctacccaactattgggaccacaggaatgggtgctgtggcagattct
agtggtttgggccctgaagatctggatgctggttcagcaaaacaactcaattcttccact
gtgcattctgggttggctgaatgtgtagatcaacacaactttggaagtggtgttatccct
atttcgacgtgtgaagtgcctgctgtacatacgaatgctgtaaaagaatcaggagagcat
gcacagttgttatcttctacgtccacaactgagaaatttggaagcagcatcttagaacag
tcattaactacaggcgatgcgctagacaagtaccagcttgtttcagagaagcttgagaat
ctgatgacggctgactgtacagaagcggatattcaggcacttgttgctgaggtacctgaa
attatccttgggtgcataagtcgagatgaggcagcattagcagtagctcaaaaggttttt
aaagggctatatgagaacgattcaaacatagcacatgtaggtgctcatcttgcaattttg
gctgccattcgtgatgttagcaagtttcttgtgaaggagcttactagttgggtaatctac
tctgaagcggaccggaaattcaacacagatattactgtcggtcttattcaaagcgacttg
cttaatgttgcagattataatgtccatatggcaaaacttcttgatgcaggaaggaataag
cctgccacagacttctcaatttctctcattaaaacattagcgaggaacaatccaaaagtc
atatccgaattacatcatcttgttgatgctctagctaagcttgcagcaaggcctggatct
ccagagtctttgcaacatctggttgagattgctaggaatccttctgctttatctgatctt
actgttgggaaagaggataacgtgagacattctagggacagaaagcaagcaagtggtcac
tctgcagcaagccgggaagagttcaatcttctgggttctgtagaaccagatccagttgga
tttcgtgatcaggtctcgatgctgtttgcagaatggtataggatatgtgaacttcctggg
ccaaaggattcagcttctgctcgctatgtcgtacaattgatgcaaagtggactgctgaat
ggggatgatatgtcagacagatttttccgccttctcatggaactctctgtgtctcactgt
ctacaatcacatcaacaaacacagccgttatctttccttgctatagacatatatgctgca
ctggtcttttcaatacttaagttttgtcccgtggaccatgggtcaagtaaactatctctg
ttgtccaaggttttggcggttgctgtgagaattatatataaagacgcagaagggaaaaaa
gcatctttcaattcaaggccatatttcaggctgttcattaactggctgtttgacctggct
accttggaaccggtgtctgaaggtgcaaatttacaggttttgatagcactggcaaatgca
tttcatgcactgcagccacttaaaatacccgcattcagctatgcctggctggagttggtg
agccacagaaatttcatgccaaagttgcttagtgggaaccctcagaagggttggccctgt
ttccagcgcttactagttgacttgtttcagttcttggagccattcttgaggaacactaaa
ctgggggagccggttcattttctatataaaggttcacttagggtgttgctggtgctcctt
cacgatttcccagaattcctctgtgactatcattttagcttctgtgatgtcattccctca
agttgcatacaaatgcgaaatattattctcagcgcatttcctcggaacatgaggctacca
gatccttcaactcctaatttaaagattgatctgttggtggagattactcaggctccgtgt
atactctcggaggttgacacagctcttagagcgaagcagatgaagagtgatgttgatgaa
tatctgaagacaaagcaacatgggtctttcctttctgagctaaagaaaaaactgctcctt
cctccagttgatgctgctcaagctgggactcggtacaatgtacctctaatgaactccctt
gtactttatgttggcgtgcaggccatacaacagctgcaggcgagaaccccctctcatgca
cttggaagtggttcattggctgcatttcatgtcggtcctgctttagatgtctttcagtta
ttaatcacagagctagacacagaaggccggtatctctttttgaatgcagttgctaaccaa
ctacgttatccaaataatcacacacattacttctcgttcatcctactttacttgtttgca
gaatcaaaccaggaagttatccaggagcagattactagagtgttagtggagcgccttatt
gttagtagaccacatccttgggggctgttaatcacattcattgagcttattaagaatccg
aggtacaacttctggaaacggtcttttaccaggtgtgcgcctgagattgaaaagcttttt
gattcggtctcgagtttgtgtgggcgttcaaaacctgtggaaggtgtggtttccggtggg
ttgtctgacatgctctag
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