KEGG   Daucus carota (carrot): 108209566
Entry
108209566         CDS       T05350                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108209566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dcr03021]
    108209566
Enzymes [BR:dcr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108209566
Transcription machinery [BR:dcr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     108209566
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 108209566
NCBI-ProteinID: XP_017236029
LinkDB
Position
2:28462018..28476977
AA seq 1435 aa
MDYDCVEQGVTSGFLSSINFGIVTDEDVEKVSVKEIEVPNDVIHPMLGIPTPMSSQCLTC
DAKNVKTCEGHFGFIKFPYPVLHPYFISDVVKILNRICVKCKSERIRTKSASSPSTKRKP
KRKRGCCKYCDGRSKDEYPRTIFKVSGKEMFESTVILARINERSRTPRVASDYWDFLQND
PQEGNTLKPHERILTYTQVQELLKGIDLRFMKDFVKDEKNLLSMNNFPVTPNSHRVNECG
QQMRFDERTRFYRKLVDFKGPANELSARVLDCLKMAKLKPEKVSVTANGPQMFHNFEDAA
PKMSGLKFIKELILGKRSDHTFRMVVVGDPSIKIDEIGVPCHIAQAMQISEQLNSQNWEN
LGLRILTRGETYVRRDGGLVRVTMKNDKLRMGDTIHRPLRDGDMVLINRPPSIHPHSLIA
LSVKILPTNSILSLNPLICSPFRGDFDGDCYHGYVPQSMDSKVELHELVALDKQLINIQS
GQNLLSLTHDSLTAAHLVIEDEVLLNRPQMQQLQMFCPQHRSLQLPAIFKASSTSPDTHW
WTGKQLFSLLLPPDFSYNCPSRAVQVSEGEVICFQSASSWLRDTKGNLLYKLLSHCQGEF
LDFLHAAQRVLGEWLSTRGLSVSLADMYLSSDPHSQKNMIEEVRYGLQEAQYVSHVKLLM
VDSNLDFLSGNHEETESTRAFSVDHSFCDQQKSAALSQVSVGAFKQVFKNIQNLFYQYAS
EDNSFLAMLKAGSKKCNLTRAVQHGLCLGLQHSLVPLSFKIPQQLSCLTWNYQKELESLD
SSADPPEFSSSYIPYAVIQSSFLSGLNPLESFVHSLTSRDGSFGGHADISGTLTRRIMFF
MRDLCMAYDGTVRSAFGNQVVQFFYGISTTAPENSDETLTDGACTMGGQPVGSWAACAIS
EAAYSALDQPISAFEPSPLLNLKEILECGGNKVNCTASLFFSKKLARWTYGFEYAALEVK
NRLERVQFSDIVSTVMIMFSAETCGQSRDSPWVCHFHINKVMATRKQIKVQSVIDALKMK
WNSTRVKSNAHLPDLKFTSNSECSENITSVCINVRIVGSNRNSGPQLETLEETVIPLLLK
SVIKGSSNVHKVDILWKDISNKSTSQMGVSGELYVRVFMSETCDRSRFWAVLMGDCLQLM
DLIDWKRSYPEDIHAAASAFGIDFAKTQFLSKLASALSDTGKAVLPEHSILIADCLSLTG
EFVALSASGLARQRKQTAVSSPFTQACFSSPSDCFINAGKMGSMDKLQGSIDALAWGNSP
SLGTGAQFDILYSGKGHEVDKPSDIYNLLGSGVGTQEQKVKVPREFSNISIKSLAKKSDF
LRKNFKATHFLWMSKELRHILHKYKVNQQLIELDEAIAAAALFFHPRSSEKIGCGLQGIK
IGLSLKGETSQCFQLIRTDGTIEEFSYHKCILNALKQTAPRSAETYESKWLGERL
NT seq 4308 nt   +upstreamnt  +downstreamnt
atggattatgattgtgtggagcaaggagttacatcagggttcttgagcagcattaatttt
ggtattgtgacggatgaagatgtggagaaggtatctgttaaagaaattgaagttcctaat
gatgtaatacatccaatgcttggaattcctactccaatgtcttctcagtgcctaacatgt
gatgcaaaaaatgtgaaaacctgtgaaggtcactttgggttcatcaaatttccataccca
gttctccacccttacttcatatcagatgtggtaaagattttgaatagaatctgtgtaaaa
tgtaaatctgaacggattaggaccaagagtgctagttcaccatcaactaaaaggaagcct
aaaaggaagcgtgggtgttgcaaatattgtgatgggcgttcaaaagatgaatatccaaga
acaatatttaaagtatcgggcaaagaaatgtttgaaagtacagtgatattggcaagaata
aatgaacgctcgagaactccacgcgtagcctctgattattgggatttccttcaaaatgat
ccacaagaaggaaatacattaaaacctcatgaaagaattttaacatatactcaggtgcaa
gaattgctgaaaggaatcgatctcagattcatgaaagattttgttaaagacgaaaagaac
ttgctctcgatgaacaattttcctgtaactcccaactcccatcgcgtgaatgaatgcgga
caacaaatgagatttgatgaacggacaaggttttacaggaagctggtcgattttaaaggt
ccagctaatgagctgagtgctcgtgttctggactgtcttaaaatggctaagctaaaacca
gagaaggtgtcggtgacagctaatggccctcaaatgtttcataattttgaagatgctgct
ccaaagatgtctggtctaaagttcattaaagagcttattctgggaaaacgatctgatcat
actttccgtatggttgtagtgggtgatcctagtataaaaattgatgaaattggcgtgcct
tgtcatattgcgcaggcaatgcaaatttctgaacagctgaattcacagaactgggaaaat
ctgggtttaaggattttgacaagaggggaaacctatgttcgcagggatgggggactagtt
cgtgtcacaatgaagaatgataaattgcggatgggggacactatacacagacctctccgt
gatggagatatggttttgatcaataggccaccatctattcaccctcattcactaattgct
ctatctgtcaaaattcttccaacaaattccattctttctctcaatccattaatctgctcc
ccttttcgcggggattttgatggtgactgttaccatggttatgttccacaatccatggat
tccaaagtagagctccacgaactggttgctttggacaagcagttaataaatattcaaagt
ggtcaaaatcttctctcacttacccatgacagtttaacagccgctcatttagtaatagag
gatgaagtgcttctcaaccgtccccaaatgcagcaactgcagatgttttgtccacaacat
cgttcactacaattgccagccattttcaaggcatcttctacttcaccagatacccactgg
tggacaggcaaacaactattcagcctgctcctacctccagattttagttataattgtccg
tcaagagctgttcaagtaagtgaaggggaagtcatatgttttcaaagtgcatcttcttgg
ctgcgagatacgaaggggaaccttctgtataaactactaagtcactgccaaggggaattt
cttgacttcctacatgctgctcagagagttctcggtgagtggttgtctacgcggggacta
agtgtttcacttgctgatatgtacctatcttcagacccacactcccaaaaaaatatgatc
gaagaagttcgttatggtcttcaggaggctcagtacgtatctcatgtaaaactattaatg
gtggattccaatctggatttccttagtggaaaccatgaagaaaccgagtctactagagcc
ttttcagttgaccactcgttttgtgaccaacaaaagtctgctgctctcagtcaagtctct
gtcggtgcattcaagcaggtttttaagaatattcagaacctattttaccaatatgcaagt
gaagacaattcttttttagccatgttaaaggcgggaagcaagaaatgtaacttgactcga
gctgtccagcatggactttgccttggcttgcagcattctttggtgccattgtcatttaag
ataccccagcaactttcttgtctcacatggaattatcaaaaggaactagaatcactcgat
tcatctgctgatcctccagaattctctagttcatacatcccttatgcagtgatccaaagt
tcttttctttcaggattgaacccactagagtcttttgttcactcattgacaagcagagac
ggttcttttggtggtcacgcagatatatctggtacgttgactcgaaggataatgtttttc
atgcgggacttgtgcatggcgtacgatggaacggtgagaagtgcctttggaaaccaagtt
gttcaatttttttatggtatcagcaccactgctccagaaaacagtgacgagacacttact
gatggtgcttgcacaatgggtggccaaccagttggttcatgggctgcttgcgcaatttct
gaagcagcctatagtgctctggatcaaccaattagtgcatttgaaccctctcctctccta
aatttgaaggaaatactagagtgtggcggcaataaggtgaactgtacagcctctttattt
ttttccaaaaagcttgcaaggtggacctatgggtttgaatatgcagctttggaggttaaa
aatcgtttggaaagagtacaattctcagacattgtttctacagtcatgataatgttctcc
gccgagacttgtggacagtcccgtgatagtccatgggtttgccattttcacataaacaag
gtcatggcaacgagaaaacaaattaaagtccaatctgtcattgatgcacttaagatgaag
tggaattctactcgagtgaaatcgaatgcccatcttccagacttgaagtttacaagcaac
agtgagtgctccgagaatattacctcggtttgtatcaatgttagaattgtcgggagcaac
aggaactccggtccccagctggaaaccctcgaggaaacggtgataccattacttctcaaa
agtgtcataaaaggatcctcaaatgtgcataaggtggatatcttatggaaagatatctca
aataaatcaacttctcaaatgggtgtatctggtgagctttatgtacgagttttcatgtca
gagacctgcgacagatcgagattttgggctgtccttatgggtgattgcctccaactaatg
gatttgattgattggaagcgcagttatcctgaagatattcatgctgcagcctcggccttt
ggaattgattttgcgaaaacacagtttttaagtaaattggcatctgctttatctgatacc
ggaaaggctgtactgcctgaacattcaatccttattgctgattgtctttcattaacggga
gaattcgttgctctgagtgcaagcgggcttgcacgacaaagaaaacagacagcagtttct
tcaccatttacgcaagcatgcttttctagtccttctgattgcttcataaatgctgggaag
atgggttccatggataaacttcagggtagtatagatgcattggcttggggaaactctcct
tctctagggactggtgcgcaatttgatatcttatactctggcaagggtcatgaagtggat
aaaccttcagatatctataatctgctgggtagcggagtcggtactcaagagcagaaagtg
aaggtacctcgtgagttcagcaatatatccatcaaatctcttgccaaaaaaagtgatttc
ctgaggaagaattttaaagcaacacactttctgtggatgtctaaagagttgaggcatata
ttacacaagtataaagttaatcaacagttaattgagttggacgaggccattgcagcagcg
gctcttttctttcaccctagatcatctgaaaagattggatgcggacttcaaggaattaag
attggtttaagcttaaagggtgaaaccagccagtgctttcagctgataagaactgatggc
accatcgaggaattttcatatcacaagtgcatacttaacgctctgaagcaaactgctccc
agaagtgcagaaacatacgaatcgaagtggttgggtgagagactctag

DBGET integrated database retrieval system