Daucus carota (carrot): 108210949
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Entry
108210949 CDS
T05350
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108210949
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108210949
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Peptidase_C24
Motif
Other DBs
NCBI-GeneID:
108210949
NCBI-ProteinID:
XP_017237902
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Position
3:complement(63683472..63688264)
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AA seq
438 aa
AA seq
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MVLSLRLSYVLCMLLLLSSAKAVVLVDEEHPQSSDERTTPLESLSNTTMAVHKHEHAVED
PEAIATMVNMAIKNSTERRKLGFFSCGTGNPIDDCWRCDQNWARNRKRLANCAIGFGRSA
VGGRDGKYYVVTDPNDDDPVNPRPGTLRHAVIQDKPLWIVFKRSMVITLKQELIMNSFKT
IDARGHSVHIANGACITIQFVTNIIIHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDAI
SIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDTYARDKVM
QVTIAYNHFGEGLMQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPSN
PFAKEVTKRVDQNAHRWRHWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSLV
GSLTSNAGALTCRRGRQC
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggtgctctcattgaggttatcctacgttctttgcatgcttttgctgctttctagtgcc
aaagctgtggtgctagttgatgaggagcatccacaatcgagcgatgaaagaacgacgccg
ttggagagcttaagcaacacgacaatggcagtccataagcatgagcatgcagtggaagat
cctgaagcaatagcaaccatggtgaacatggcaattaagaatagcactgaaaggaggaag
ctgggatttttttcatgtggtacagggaaccctattgatgattgctggcgctgtgaccag
aattgggcacgtaaccgtaagcgccttgccaactgtgccattggcttcggacgcagtgct
gttggtggccgtgatggcaagtactatgttgtcacagacccgaatgatgatgaccctgtg
aacccgagaccaggaactctgcgtcatgctgtgatccaagacaagcctttatggattgtc
ttcaaacgcagcatggtgatcacgctaaaacaagagctaattatgaacagcttcaaaact
attgatgcccgaggacactctgtccatattgcaaacggcgcttgcattactattcagttt
gtcacaaatattattatacatggacttaacatccatgattgtaaaccgactggcaatgcc
atggttcgaagctcaccaagtcattacggttggaggacaatggctgatggtgatgctatc
tccattttcggatccagccacatttggattgatcacaattccctctccaactgtgctgat
ggcctagtcgatgctataatgggatcgactgcaattacaatttctaacaactacttcact
caccacaatgaggtgatgctgttaggccacagtgacacctacgcaagagacaaggtcatg
caggtcacaattgcttacaaccatttcggagagggccttatgcagagaatgccaaggtgc
aggcacggatactttcatgtggtaaacaatgactatacccactgggaaatgtatgccatt
ggaggcagtgctgatcctacaataaacagccagggaaacagatatcttgccccctcaaac
ccttttgctaaggaggtgaccaagagagttgatcaaaatgcgcacagatggaggcactgg
aattggagatcagaaggtgacctgatgctcaacggagcttattttactccatctggtgct
ggagcttcagccagctacgccagggcctcaagtctgggcgcaaagtcctcttccttggtc
ggatctcttacctctaatgctggtgctcttacctgtcgtagaggccgccaatgttaa
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