Daucus carota (carrot): 108210991
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Entry
108210991 CDS
T05350
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108210991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108210991
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108210991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_NOL10_N
Beta-prop_NWD2_C
Tricorn_2nd
Ge1_WD40
Cytochrom_D1
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
108210991
NCBI-ProteinID:
XP_017237955
UniProt:
A0A166AKL6
LinkDB
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Position
3:complement(15976665..15983258)
Genome browser
AA seq
443 aa
AA seq
DB search
MDSNNNHNSSVLEQTLQDGKLLRLLNCLIVAHLRDSNHTQAASAVALATMTPLNTEAPPN
KLIELVAKGLAAENNDVFGGFSSFALDSSVNGTAAHGSIPAPRTTVVDFSAVHDTKGASK
IFSKHETRHISEHKNVARCARFSPDGKFVATGSADLSIKLFEVAKIKQTMLPDSREGSVR
PIIRTFYDHLQPINDLDFHPQNSILISGAKDHTIRFFDYSKTVAKRAFKVIQDTHNVRSV
SFHPSGDFVLAGTDHPIPHLYDINTFHCYVSANVLESNANGAINQVRYSSTGGMYVTASK
DGSVKLWDGVTASCVRSIGGAHGTAEATSANFTKDQRFVLSCGKDSSVKLWEIGTGRLVK
QYVGATHTQLRCQAVFSDTEEFVLCIDEPSNEIVIWDALTAEKVARWPSNHNGAPRWLDH
SPTEAAFISCGTDRSIRFWKETL
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggatagtaataataatcacaacagcagcgtgttggagcagacattgcaagatgggaag
cttcttcgtttgcttaattgcttgattgttgcccatcttcgtgacagcaatcatacccag
gctgctagtgcagttgctttggctacaatgacgcccctgaatactgaagcgccccctaac
aagctcatagaacttgttgctaagggtcttgcagcagaaaacaatgatgtttttggaggt
ttttcttcttttgcactggattcgagtgtcaatggaactgcagcacatggctcgattcca
gctcctcgcactactgtcgtggatttcagtgctgtacatgacacaaaaggtgcatcaaag
atattttcaaagcatgagactcgtcatatttcagagcataagaatgttgccagatgtgca
cgatttagtccagatgggaagtttgttgcaactggaagtgcagatttgtctataaagctc
tttgaggtagctaaaatcaagcaaacaatgttgccagattcaagggaaggttctgtgcga
cctattatacggacgttttacgaccatttacaacctataaatgatttggattttcatcct
caaaatagtattctaatatcgggcgccaaagatcatacaatacggttcttcgattattcc
aaaaccgtggcaaagagggcattcaaagttatacaggatacccacaatgtgagatcggtg
tcttttcatccctctggagactttgttttggcaggaactgatcatccaattccacacttg
tatgatataaatacttttcactgttacgtatcagcaaatgtcctagagagtaatgctaat
ggtgcaatcaatcaggtacggtactcatctactggtggcatgtatgtcacagcctcaaaa
gatggttccgtcaagctatgggatggtgtaactgccagttgtgttcgatctattggaggt
gcacatgggacagcagaggccactagtgcaaattttacaaaggatcagagatttgtcctc
tcttgtggtaaggattcgtcagttaaactttgggaaattggtaccggaaggttggttaaa
cagtatgtaggagccacacatacgcagctgagatgccaggctgttttcagtgatacggaa
gagtttgtactgtgtattgatgaaccaagtaatgagattgtcatctgggacgctctaaca
gcagagaaagtagcaagatggccatcgaaccataatggtgcacctcgttggcttgaccac
tcaccaacagaggcggcattcatttcatgtggcacagacaggtcaatacggttttggaag
gaaactctgtag
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